BAC Information

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BAC

Clone NameB6Ng01-211L12
Chromosome10 (Build37)9 (Build37)
Map Location 21,353,311 - 21,353,98133,084,339 - 33,084,824
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePde7b, LOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik
Downstream geneEG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211L12.bB6Ng01-211L12.g
ACCGA029706GA029707
length683938
definitionB6Ng01-211L12.b B6Ng01-211L12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,353,311 - 21,353,981)(33,084,339 - 33,084,824)
sequence
gaattctctaaatagccattcttttatttcatagcatctttttattttat
gattagaaatagtacagttctacacagtaaattaacaatgaataagtagt
catgacagtataaaaatctcaacttgttggcacctggcaggattctgttt
attgtcaacacaatagctatgtagttagatataggtggttcatttcagtg
atcactcacagacatactatgtttcagggtatacttttttttaaaattga
aaatttccagtgtaccaaaaaattctgctccagtcagagaaaatagcagc
caacctccccagggcacttccccagatatgtcgcactatttgcttttgca
aagtataataaatgttgattaagtttctgagttttctgatgtttattctg
ctataaataaagttttcagtttattctgggtaaatgaaaacctcaactgt
accaggaatgacctgctgactaattaaaaggcattctgatattataaaca
aacttattaaagcataagaaacttagagtcttaaagtaaaaacaagacgt
gtaaaaagatttctgtttttgcttgataatttttaaatcgcattattatt
tgtgtgtgtgtgagagagagagagacagagagagagggagggagagagag
agagtgagagagagagggagaaatcatctggaa
gaattctaggaaactcaggcccacacagagcaaccctgtctctgaaaaaa
actaacaaacaaaacaaaagaacacctctagaagccgtttccaaaccaag
acaaacaaggtggtagtggccatgagtcacatcagtaaaaacaaagaagt
gtatttatgacaggacatccttcacctctgcctccaaaatgtatatagca
ctggctacaactccaatgggaggcatttccatatgagtgtgggaatttga
acagactgttgcaaagttatactttttcagatgttaaggagcccatgagc
atgttgctagagtcttgtaagatcaatctctgctttcatctccctctccc
cctccccctgagccttatttataatagccaaaagctggaaagaacccaga
tgtccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgagtttatgaaattcctaagca
aatggatggacctgcagggcatcatcctgagtgaggtaacccaatcacaa
aggaactggcacaatatgtactcactgataagtggatattagcccagaaa
ctttaggatacccaagatataagatagaatttgcacaacacatgaaactg
aagaagaacgaagaactttgccccttctttagaatggaaacaaacaccca
tggaaaggagttacagagcccaaaatttggagctgtgatgaaaggatgga
cccatctagtgattgcccatatccggggatcccatcccataatcagcttc
caaacgctgacaccattgcatacactagaaagatttttgctgaaaggacc
cagatattgctctctcttgtgagacctatgctggggcctaagcaaacaca
gaagttgaatgtcacagtcagctattggatgggttcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_21353311_21353981
seq2: B6Ng01-211L12.b_46_716

seq1  GAATTCTCTAAATAGCCATTCTTTTATTTCATAGCATCTTTTTATTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAATAGCCATTCTTTTATTTCATAGCATCTTTTTATTTTAT  50

seq1  GATTAGAAATAGTACAGTTCTACACAGTAAATTAACAATGAATAAGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAAATAGTACAGTTCTACACAGTAAATTAACAATGAATAAGTAGT  100

seq1  CATGACAGTATAAAAATCTCAACTTGTTGGCACCTGGCAGGATTCTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAGTATAAAAATCTCAACTTGTTGGCACCTGGCAGGATTCTGTTT  150

seq1  ATTGTCAACACAATAGCTATGTAGTTAGATATAGGTGGTTCATTTCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAACACAATAGCTATGTAGTTAGATATAGGTGGTTCATTTCAGTG  200

seq1  ATCACTCACAGACATACTATGTTTCAGGGTATACTTTTTTTTAAAATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCACAGACATACTATGTTTCAGGGTATACTTTTTTTTAAAATTGA  250

seq1  AAATTTCCAGTGTACCAAAAAATTCTGCTCCAGTCAGAGAAAATAGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCAGTGTACCAAAAAATTCTGCTCCAGTCAGAGAAAATAGCAGC  300

seq1  CAACCTCCCCAGGGCACTTCCCCAGATATGTCGCACTATTTGCTTTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCCCCAGGGCACTTCCCCAGATATGTCGCACTATTTGCTTTTGCA  350

seq1  AAGTATAATAAATGTTGATTAAGTTTCTGAGTTTTCTGATGTTTATTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAATAAATGTTGATTAAGTTTCTGAGTTTTCTGATGTTTATTCTG  400

seq1  CTATAAATAAAGTTTTCAGTTTATTCTGGGTAAATGAAAACCTCAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATAAAGTTTTCAGTTTATTCTGGGTAAATGAAAACCTCAACTGT  450

seq1  ACCAGGAATGACCTGCTGACTAATTAAAAGGCATTCTGATATTATAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAATGACCTGCTGACTAATTAAAAGGCATTCTGATATTATAAACA  500

seq1  AACTTATTAAAGCATAAGAAACTTAGAGTCTTAAAGTAAAAACAAGACGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTAAAGCATAAGAAACTTAGAGTCTTAAAGTAAAAACAAGACGT  550

seq1  GTAAAAAGATTTCTGTTTTTGCTTGATAATTTTTAAATCGCATTATTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGATTTCTGTTTTTGCTTGATAATTTTTAAATCGCATTATTATT  600

seq1  TGTGTGTGTGTGAGAGAGAGAGAGACAGAGAGAGAGGGAGGGAGAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGAGAGAGAGAGAGACAGAGAGAGAGGGAGGGAGAGAGAG  650

seq1  AGAGTGAGAGAGAGAGGGAGA  671
      |||||||||||||||||||||
seq2  AGAGTGAGAGAGAGAGGGAGA  671

seq1: chr9_33084339_33084824
seq2: B6Ng01-211L12.g_427_995 (reverse)

seq1  CCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGC-TAGGCCCC  49
      |||||||||||||||||||||   || |||||||||||||| ||||||||
seq2  CCATCCAATAGCTGACTGTGACATTCAACTTCTGTGTTTGCTTAGGCCCC  50

seq1  AGCATA-GTCTCACAGGAGACAGCTATATCTGGGTCCTTTCAGC-AAAAT  97
      |||||| |||||||| |||| ||| ||||||||||||||||||| |||||
seq2  AGCATAGGTCTCACAAGAGAGAGCAATATCTGGGTCCTTTCAGCAAAAAT  100

seq1  CTTGCTAGTGTGTGCATTGGTGTCAGCGTTTGGAAGCTGATTATGGGAT-  146
      ||| ||||||| |||| |||||||||||||||||||||||||||||||| 
seq2  CTTTCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGATG  150

seq1  GGATCCCCAGATAT-GGCCGTCTCTAGAT-GGTCCATCCTTTCGTCACAG  194
      |||||||| ||||| |||  || |||||| ||||||||||||| ||||||
seq2  GGATCCCCGGATATGGGCAATCACTAGATGGGTCCATCCTTTCATCACAG  200

seq1  CTCCAAACTTT-GTCTCTGTAACTCC-TTCCATGGGTGTTTTGTTC----  238
      ||||||| ||| | |||||||||||| ||||||||||||||  |||    
seq2  CTCCAAATTTTGGGCTCTGTAACTCCTTTCCATGGGTGTTTGTTTCCATT  250

seq1  -------------------------------------------------C  239
                                                       |
seq2  CTAAAGAAGGGGCAAAGTTCTTCGTTCTTCTTCAGTTTCATGTGTTGTGC  300

seq1  CAATTCT----------------------AAGTTTCTGGGCTAATATTCA  267
       ||||||                      |||||||||||||||||| ||
seq2  AAATTCTATCTTATATCTTGGGTATCCTAAAGTTTCTGGGCTAATATCCA  350

seq1  CTTATCAGTGAGTACATATTGTTTGAGTTCCTTTGTGATTGGCTTACCTC  317
      ||||||||||||||||||||||   ||||||||||||||||| |||||||
seq2  CTTATCAGTGAGTACATATTGTGCCAGTTCCTTTGTGATTGGGTTACCTC  400

seq1  TCTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCGAGGAATTTCATAA  367
       |||||||||||||||| |||||||||||||||||  |||||||||||||
seq2  ACTCAGGATGATGCCCTGCAGGTCCATCCATTTGCTTAGGAATTTCATAA  450

seq1  ATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGCACCAC  417
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCAC  500

seq1  ATTTTTTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCT  467
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCT  550

seq1  TCTGGCTATTATAAATAAG  486
      | |||||||||||||||||
seq2  TTTGGCTATTATAAATAAG  569