MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-211N19
Chromosome	9 (Build37)
Map Location	62,421,379 - 62,589,228
singlet/doublet	doublet
Overlap gene	Itga11
Upstream gene	Rplp1, Kif23, Paqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b
Downstream gene	EG665478, Fem1b, Cln6, Calml4, Pias1, LOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3
Link	Open Mouse BAC browser

Click to get alignment info.

name	Rplp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56040 MGI:1927099
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kif23 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71819 MGI:1919069
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Paqr5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74090 MGI:1921340
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Glce (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93683 MGI:2136405
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spesp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66712 MGI:1913962
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039897 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039897
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Anp32a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11737 MGI:108447
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Coro2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235431 MGI:2444283
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Itga11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319480 MGI:2442114
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG665478 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665478 MGI:3643729
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Fem1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14155 MGI:1335087
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cln6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76524 MGI:2159324
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Calml4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75600 MGI:1922850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pias1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56469 MGI:1913125
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039976 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039976
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Ppia-ps9_818.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:606730
definition	note : peptidylprolyl isomerase A (Ppia) pseudogene 9_818.1 pseudo : _no_value

name	Lbxcor1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:207667 MGI:2443473
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Map2k5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23938 MGI:1346345
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2300009A05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69478 MGI:1916728
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 30 ESTs, 2 Proteins

name	Iqch (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78250 MGI:1925500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs, 2 Proteins

name	LOC621763 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621763
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 46 ESTs, 3 Proteins pseudo : _no_value

name	2310007F21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66939 MGI:1914189
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Smad3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17127 MGI:1201674
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rplp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130696 GeneID:56040 MGI:1927099
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein, large, P1 transcript_id : NM_018853.3

name	Kif23 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:29568093 GeneID:71819 MGI:1919069
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinesin family member 23 transcript_id : NM_024245.3

name	Paqr5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383667 GeneID:74090 MGI:1921340
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : progestin and adipoQ receptor family member V transcript_id : NM_028748.2

name	Glce (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892759 GeneID:93683 MGI:2136405
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glucuronyl C5-epimerase transcript_id : NM_033320.4

name	Spesp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802273 GeneID:66712 MGI:1913962
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sperm equatorial segment protein 1 transcript_id : NM_025721.2

name	Anp32a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254599 GeneID:11737 MGI:108447
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acidic (leucine-rich) nuclear phosphoprotein 32 family, member A transcript_id : NM_009672.2

name	Coro2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803424 GeneID:235431 MGI:2444283
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coronin, actin binding protein, 2B transcript_id : NM_175484.2

name	Itga11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254394 GeneID:319480 MGI:2442114
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integrin, alpha 11 transcript_id : NM_176922.4

name	Fem1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46402518 GeneID:14155 MGI:1335087
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : feminization 1 homolog b (C. elegans) transcript_id : NM_010193.3

name	Cln6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372439 GeneID:76524 MGI:2159324
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ceroid-lipofuscinosis, neuronal 6 transcript_id : NM_001033175.2

name	Calml4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129956 GeneID:75600 MGI:1922850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calmodulin-like 4 transcript_id : NM_138304.2

name	Pias1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361261 GeneID:56469 MGI:1913125
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein inhibitor of activated STAT 1 transcript_id : NM_019663.3

name	Lbxcor1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383959 GeneID:207667 MGI:2443473
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ladybird homeobox 1 homolog (Drosophila) corepressor 1 transcript_id : NM_172446.2

name	Map2k5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130017 GeneID:23938 MGI:1346345
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen activated protein kinase kinase 5 transcript_id : NM_011840.2

name	2300009A05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386166 GeneID:69478 MGI:1916728
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 14 ESTs, 1 Protein product : RIKEN cDNA 2300009A05 gene, transcript variant 3 transcript_id : XM_898537.2

name	2300009A05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386167 GeneID:69478 MGI:1916728
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 16 ESTs, 1 Protein product : RIKEN cDNA 2300009A05 gene, transcript variant 1 transcript_id : XM_204313.6

name	Iqch (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386168 GeneID:78250 MGI:1925500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs, 2 Proteins product : IQ motif containing H, transcript variant 1 transcript_id : XM_134960.5

name	Iqch (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260023 GeneID:78250 MGI:1925500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 ESTs, 1 Protein product : IQ motif containing H transcript_id : XM_001475908.1

name	2310007F21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802812 GeneID:66939 MGI:1914189
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310007F21 gene transcript_id : NM_025857.2

name	Smad3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801800 GeneID:17127 MGI:1201674
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MAD homolog 3 (Drosophila) transcript_id : NM_016769.3

name	Rplp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9256519 CCDS:CCDS23260.1 GeneID:56040 MGI:1927099
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA]; GO:0006414 - translational elongation [Evidence IEA] codon_start : 1 note : acidic ribosomal phosphoprotein P1 product : ribosomal protein, large, P1 protein_id : NP_061341.1

name	Kif23 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29568094 GeneID:71819 MGI:1919069
definition	GO_component : GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003777 - microtubule motor activity [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007018 - microtubule-based movement [Evidence IEA] codon_start : 1 exception : mismatches in translation note : kinesin-like 5 (mitotic kinesin-like protein 1) product : kinesin family member 23 protein_id : NP_077207.2

name	Paqr5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037337 CCDS:CCDS23261.1 GeneID:74090 MGI:1921340
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : membrane progestin receptor gamma protein_id : NP_083024.1

name	Glce (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:65301488 CCDS:CCDS23262.1 GeneID:93683 MGI:2136405
definition	GO_component : GO:0005618 - cell wall [Evidence IEA]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016853 - isomerase activity [Evidence IEA]; GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IMP] [Evidence IDA] GO_process : GO:0006024 - glycosaminoglycan biosynthesis [Evidence IEA]; GO:0015012 - heparan sulfate proteoglycan biosynthesis [Evidence IDA]; GO:0030210 - heparin biosynthesis [Evidence IDA]; GO:0009252 - peptidoglycan biosynthesis [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA] codon_start : 1 note : heparan sulfate-glucuronic acid C5-epimerase product : D-glucuronyl C5-epimerase protein_id : NP_201577.3

name	Spesp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385180 CCDS:CCDS23263.1 GeneID:66712 MGI:1913962
definition	GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 product : sperm equatorial segment protein 1 protein_id : NP_079997.1

name	Anp32a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254600 GeneID:11737 MGI:108447
definition	GO_component : GO:0016363 - nuclear matrix [Evidence IPI]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : leucine rich acidic nuclear protein; acidic nuclear phosphoprotein 32; vacidic (leucine-rich) nuclear phosphoprotein 32 family, member A product : acidic (leucine-rich) nuclear phosphoprotein 32 family, member A protein_id : NP_033802.2

name	Coro2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28202047 CCDS:CCDS23264.1 GeneID:235431 MGI:2444283
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] codon_start : 1 note : KIAA0925-like; E130012P22 product : coronin, actin binding protein, 2B protein_id : NP_780693.1

name	Itga11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254395 CCDS:CCDS23265.1 GeneID:319480 MGI:2442114
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007229 - integrin-mediated signaling pathway [Evidence IEA]; GO:0006929 - substrate-bound cell migration [Evidence IMP] codon_start : 1 exception : mismatches in translation note : integrin a11 product : integrin alpha 11 protein_id : NP_795896.3

name	Fem1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753840 CCDS:CCDS23266.1 GeneID:14155 MGI:1335087
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 product : feminization 1 homolog b protein_id : NP_034323.1

name	Cln6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677520 CCDS:CCDS23267.1 GeneID:76524 MGI:2159324
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0031987 - locomotion during locomotory behavior [Evidence IMP]; GO:0007040 - lysosome organization and biogenesis [Evidence IMP]; GO:0007601 - visual perception [Evidence IMP] codon_start : 1 note : neuronal ceroid lipofuscinosis product : ceroid-lipofuscinosis, neuronal 6 protein_id : NP_001028347.1

name	Calml4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956268 GeneID:75600 MGI:1922850
definition	codon_start : 1 product : calmodulin-like 4 protein_id : NP_612177.1

name	Pias1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543478 GeneID:56469 MGI:1913125
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003714 - transcription corepressor activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007259 - JAK-STAT cascade [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : DEAD/H (Asp-Glu-Ala-Asp/His) box binding protein 1 product : protein inhibitor of activated STAT 1 protein_id : NP_062637.2

name	Lbxcor1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369603 CCDS:CCDS23268.1 GeneID:207667 MGI:2443473
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0003714 - transcription corepressor activity [Evidence IDA] GO_process : GO:0016481 - negative regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : transcriptional corepressor Corl1 protein_id : NP_766034.1

name	Map2k5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754624 CCDS:CCDS23269.1 GeneID:23938 MGI:1346345
definition	GO_component : GO:0005819 - spindle [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007507 - heart development [Evidence IMP]; GO:0000165 - MAPKKK cascade [Evidence IMP] codon_start : 1 note : MAPK/ERK kinese 5; MAPK/ERK kinase 5 product : mitogen activated protein kinase kinase 5 protein_id : NP_035970.1

name	2300009A05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930191 GeneID:69478 MGI:1916728
definition	codon_start : 1 product : hypothetical protein LOC69478 isoform 3 protein_id : XP_903630.1

name	2300009A05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63589667 GeneID:69478 MGI:1916728
definition	codon_start : 1 product : hypothetical protein LOC69478 isoform 1 protein_id : XP_204313.2

name	Iqch (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260024 GeneID:78250 MGI:1925500
definition	codon_start : 1 product : IQ motif containing H protein_id : XP_001475958.1

name	Iqch (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20890410 GeneID:78250 MGI:1925500
definition	codon_start : 1 product : IQ motif containing H isoform 1 protein_id : XP_134960.1

name	2310007F21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625673 CCDS:CCDS23271.1 GeneID:66939 MGI:1914189
definition	GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : hypothetical protein LOC66939 protein_id : NP_080133.1

name	Smad3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543222 CCDS:CCDS23272.1 GeneID:17127 MGI:1201674
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0003690 - double-stranded DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0008134 - transcription factor binding [Evidence IPI]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0007182 - common-partner SMAD protein phosphorylation [Evidence IEA]; GO:0001707 - mesoderm formation [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0009887 - organ morphogenesis [Evidence IEA]; GO:0048340 - paraxial mesoderm morphogenesis [Evidence IMP]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0051098 - regulation of binding [Evidence IDA]; GO:0050678 - regulation of epithelial cell proliferation [Evidence IMP]; GO:0050776 - regulation of immune response [Evidence IMP]; GO:0016202 - regulation of striated muscle development [Evidence IDA]; GO:0017015 - regulation of transforming growth factor beta receptor signaling pathway [Evidence IDA]; GO:0007183 - SMAD protein heteromerization [Evidence IEA]; GO:0042110 - T cell activation [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : Smad 3 product : MAD homolog 3 protein_id : NP_058049.2

name	LOC100039897 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039897
definition	number : 1 pseudo : _no_value

name	EG665478 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665478
definition	number : 1 pseudo : _no_value

name	LOC100039976 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039976
definition	number : 5 pseudo : _no_value

name	LOC100039976 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039976
definition	number : 4 pseudo : _no_value

name	LOC100039976 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039976
definition	number : 3 pseudo : _no_value

name	LOC100039976 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039976
definition	number : 2 pseudo : _no_value

name	LOC100039976 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039976
definition	number : 1 pseudo : _no_value

name	LOC621763 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260025 GeneID:621763
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 46 ESTs, 3 Proteins product : similar to DnaJ (Hsp40) homolog, subfamily C, member 17 pseudo : _no_value transcript_id : XR_032501.1

clone name	MSMg01-083B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-199E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473E07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-408B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-188B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032D11
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-211N19.b	B6Ng01-211N19.g
ACC	GA029808	GA029809
length	1,113	1,130
definition	B6Ng01-211N19.b	B6Ng01-211N19.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(62,588,104 - 62,589,228)	(62,421,379 - 62,422,490)
sequence	gaattcttcaaaaagaattttacacttgcagctggtggtaccattctaga gaacagacactgtggaaatttagcccatttcctgccctaaccagcattgg ctacatttttcttagagaagacctggaactcacttttgtttgcttgcttg cttgcttgcttgcttccttccttccttccttccttttctccttttttaaa aaaacatttatttatttatttttttattgtctgcatgtaggtatgtgcac catgtacatgcctcatgtctgaggttatcagaagagggtatcagatcccc tggaactggagttacagatggttgtgggcaaccacgtgggctctaggaac taagcctaggacttctgtaagagtaaccagtactcttaactgctgagcta tcgtttcatcccaaggtataggttttcacagaggtaatccaggttcttgg tggttccctgtcacctctgtgagctagctattcattctcctcagcataca ctgtgccctttgctgatttctggagggtgctgggcatgtgccgagcctca gagctgcctgctcaacccatggtacccccttgcagcccactggttggtct gcaccctcagctctgctcaaggtcacttcagcggtggcaaccctgcctcc ctgttgacaggcctccccggtggaggtcatgcctttcaaatttgagttaa cacttgtcagagccctctgctggttgggacccaccaaggtcagggtccac agactgccatctttgtaaccctttggatctgtggcttagatcttgacctt gaagtagaaaaaataaaaacaaaacaaagacacaaaacaaaaccaagtga gcaacaacagaatggattggagataacggagcgaggagagaaagctgctc accttcagatgctggtgagcacctgggtagcataaacctacagttgcagg tacttgggggctgaggatagcctgggctatgtagcaagactcgtctcaga aaagcaattaggactggaaatatagcttagtgcagacacttatctagaat aataaagtcatgtcatcaagttctgcaatcagtccattcatcgtcaatcc agaattagctata	gaattccaggccagccagggctaacacaatgagatttggtttcaaaatat ttttctaaatatgcatgttcttcctaataatagtttcaagagtcatgaag gaaatgataagactgcatggatatgggtatgcccacagttaccacggggg tttcagcagtcctctcaactaaggggtggtaccccagcaagaataaaaat gtgagtgacccagtttgggcgctttggtttattgacatatgttgagcatc ctatctcagcaagagcacaccatttacacacatacacatacacacactca cacaacatactctctctcacacacactcacataaatattcacacgcttat gcactcatatatacatacatacatacacacacattcacacatattcacac ccatatacacactcacacacacgcactcacactcatgcatgcattcacac acacaggcatacattcacacacactcatacatacatttacacagacacac acacacacacacacacacacacagagcacctatcaaagtggccactttct acactgcagaaaggatcaatatattttgaagaattgaacatggagtgttt tctgagcaaaataaaattaagccgtaagttaaaagcagaaacatagaccc cctccccacaatatatgccaatgaaatactaatcttcaaagcaatacctg actcaaaaaataaatcacaagaggctaaacttccagaagtcaagagattt ctctcggggaggctaagtcaggggtaaacaactgctgagctcggtgaatc aggcaaggcacagtgcttctgcttttcaaatcgcctcagataataatttt aaaattgcatttgttactgttactgttatttatttctggtgtgtgcaaaa aatgtatactcaacatcctttacagatataaaaaagtgtaactaacacta ttttaaagggcctacttcagtagaattaaacacaagagcctcttcaggga atgcagtgcttccatttatttcacaaagcacaatggttgaggaagcccgc tagtggagtcaggggaccaggtatctcctttccactgtgggtttccaggg atcaaattcagggttgtcagccttccattg
quality values	Open. Hide. 58 31 27 32 62 62 62 62 38 18 47 62 62 62 62 62 31 39 62 62 49 62 54 44 62 62 62 62 47 59 62 59 59 62 38 34 38 33 56 51 59 59 59 62 62 62 59 59 62 62 62 62 62 62 59 62 59 62 62 59 62 59 59 54 62 59 62 62 59 62 62 59 62 62 62 62 59 62 62 62 62 54 54 62 62 62 62 59 62 62 62 59 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 54 62 62 54 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 49 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 47 62 62 62 62 62 62 62 62 62 62 46 62 62 62 62 62 62 62 62 52 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 54 54 58 58 58 58 58 58 54 41 58 58 52 58 58 58 58 58 58 47 52 58 58 58 58 58 58 58 58 52 58 58 58 52 49 52 58 52 58 58 58 58 58 58 58 58 58 58 52 58 54 58 58 58 52 58 58 52 46 54 58 52 58 58 58 58 58 58 54 58 58 58 58 50 58 49 58 58 58 53 58 58 50 58 58 58 58 42 53 58 58 47 54 51 51 58 58 53 53 58 58 58 58 48 37 54 58 37 51 52 58 58 58 49 50 53 58 58 58 50 54 58 49 39 47 48 43 54 58 58 54 58 51 39 46 43 50 58 50 50 58 41 36 36 28 39 32 49 51 41 54 49 50 51 58 32 53 53 53 21 51 37 41 42 52 51 41 51 50 58 51 39 34 58 50 52 58 51 50 54 42 53 52 34 51 41 40 49 54 50 54 50 40 45 31 54 16 42 44 35 41 38 49 49 39 45 52 53 29 38 54 54 51 37 22 26 33 35 44 49 39 16 28 54 28 37 28 14 54 51 37 37 47 32 40 32 33 37 38 45 45 26 51 33 45 53 53 54 37 39 34 21 42 45 51 47 52 52 41 54 35 27 34 30 42 52 32 44 33 18 36 25 31 11 34 34 31 53 27 31 34 23 32 33 41 33 34 41 34 41 26 31 51 53 53 52 47 38 27 7 46 46 51 33 46 22 45 51 43 51 23 45 37 31 30 28 23 51 31 46 51 29 41 27 37 51 27 28 28 7 31 33 31 45 35 26 31 32 30 31 24 26 42 23 29 44 18 31 31 35 12 12 42 46 16 37 19 31 26 20 21 31 20 17 31 13 37 15 26 31 42 33 18 43 31 34 48 33 25 33 36 43 34 35 32 27 32 38 31 30 31 22 21 23 14 33 32 32 33 33 19 32 41 23 31 16 24 35 18 16 44 24 20 38 19 32 23 34 33 48 34 29 23 32 31 32 24 18 25 15 22 30 15 25 21 25 21 32 16 18 19 43 43 43 26 19 41 13 7 7 33 22 23 28 21 37 22 17 21 43 24 19 12 14 24 31 32 32 28 32 19 21 17 23 28 8 20 21 32 28 32 28 24 12 28 47 47 34 16 30 16 11 15 14 20 13 8 14 19 27 16 10 5 19 13 8 7 9 15 17 28 14 18 24 4 11 9 17 5 15 27 9 16 26 27 24 24 21 15 11 9 8 21 15 26 27 21 14 18 28 13 13 16 28 20 10 19 3 6 3 6 14 3 6 6 16 6 16 10 11 18 21 21 7 14 16 15 16 10 16 11 12 6 24 15 21 25 8 14 23 10 7 13 7 5 24 5 10 16 17 10 17 6 23 21 15 10 7	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chr9_62588104_62589228
seq2: B6Ng01-211N19.b_49_1161 (reverse)

seq1  TATAGCTAATTCTTTGATTGACGGATGGATGGACTGATTTGCAGAACTTG  50
      |||||||||||| | ||||||| |||| ||||||||| ||||||||||| 
seq2  TATAGCTAATTC-TGGATTGAC-GATGAATGGACTGA-TTGCAGAACTT-  46

seq1  GATGGAACCATGACTTTATTATTCTAGATAAGTGTTCTGCAACTAAGCTA  100
      ||||    |||||||||||||||||||||||||| ||||| |||||||||
seq2  GATG---ACATGACTTTATTATTCTAGATAAGTG-TCTGC-ACTAAGCTA  91

seq1  TATTTCCAGTCCTAATTGCTTTTTCTTGAGACGAGGTCTTGCTACATAGC  150
      |||||||||||||||||||||||   |||||||| |||||||||||||||
seq2  TATTTCCAGTCCTAATTGCTTTT--CTGAGACGA-GTCTTGCTACATAGC  138

seq1  CCAGGCTATCCTCAAGCCCCCAAGTACCTGCAACTGTAGGTTTATGCTA-  199
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  CCAGGCTATCCTC-AGCCCCCAAGTACCTGCAACTGTAGGTTTATGCTAC  187

seq1  CCAGGTGCTCACCAGCATCTGAAGGTGAGCAGCTTTCTCTCCTCGCTCCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGCTCACCAGCATCTGAAGGTGAGCAGCTTTCTCTCCTCGCTCCG  237

seq1  TTATCTCCAATCCATTCTGTTGTTGCTCACTTGGTTTTGTTTTGTGTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCCAATCCATTCTGTTGTTGCTCACTTGGTTTTGTTTTGTGTCTT  287

seq1  TGTTTTGTTTTTATTTTTTCTACTTCAAGGTCAAGATCTAAGCCACAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTTATTTTTTCTACTTCAAGGTCAAGATCTAAGCCACAGAT  337

seq1  CCAAAGGGTTACAAAGATGGCAGTCTGTGGACCCTGACCTTGGTGGGTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGGTTACAAAGATGGCAGTCTGTGGACCCTGACCTTGGTGGGTCC  387

seq1  CAACCAGCAGAGGGCTCTGACAAGTGTTAACTCAAATTTGAAAGGCATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGCAGAGGGCTCTGACAAGTGTTAACTCAAATTTGAAAGGCATGA  437

seq1  CCTCCACCGGGGAGGCCTGTCAACAGGGAGGCAGGGTTGCCACCGCTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACCGGGGAGGCCTGTCAACAGGGAGGCAGGGTTGCCACCGCTGAA  487

seq1  GTGACCTTGAGCAGAGCTGAGGGTGCAGACCAACCAGTGGGCTGCAAGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTTGAGCAGAGCTGAGGGTGCAGACCAACCAGTGGGCTGCAAGGG  537

seq1  GGTACCATGGGTTGAGCAGGCAGCTCTGAGGCTCGGCACATGCCCAGCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCATGGGTTGAGCAGGCAGCTCTGAGGCTCGGCACATGCCCAGCAC  587

seq1  CCTCCAGAAATCAGCAAAGGGCACAGTGTATGCTGAGGAGAATGAATAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGAAATCAGCAAAGGGCACAGTGTATGCTGAGGAGAATGAATAGC  637

seq1  TAGCTCACAGAGGTGACAGGGAACCACCAAGAACCTGGATTACCTCTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCACAGAGGTGACAGGGAACCACCAAGAACCTGGATTACCTCTGTG  687

seq1  AAAACCTATACCTTGGGATGAAACGATAGCTCAGCAGTTAAGAGTACTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTATACCTTGGGATGAAACGATAGCTCAGCAGTTAAGAGTACTGG  737

seq1  TTACTCTTACAGAAGTCCTAGGCTTAGTTCCTAGAGCCCACGTGGTTGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTACAGAAGTCCTAGGCTTAGTTCCTAGAGCCCACGTGGTTGCC  787

seq1  CACAACCATCTGTAACTCCAGTTCCAGGGGATCTGATACCCTCTTCTGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCATCTGTAACTCCAGTTCCAGGGGATCTGATACCCTCTTCTGAT  837

seq1  AACCTCAGACATGAGGCATGTACATGGTGCACATACCTACATGCAGACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAGACATGAGGCATGTACATGGTGCACATACCTACATGCAGACAA  887

seq1  TAAAAAAATAAATAAATAAATGTTTTTTTAAAAAAGGAGAAAAGGAAGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATAAATAAATAAATGTTTTTTTAAAAAAGGAGAAAAGGAAGGA  937

seq1  AGGAAGGAAGGAAGCAAGCAAGCAAGCAAGCAAGCAAACAAAAGTGAGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGCAAGCAAGCAAGCAAGCAAGCAAACAAAAGTGAGTT  987

seq1  CCAGGTCTTCTCTAAGAAAAATGTAGCCAATGCTGGTTAGGGCAGGAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCTTCTCTAAGAAAAATGTAGCCAATGCTGGTTAGGGCAGGAAAT  1037

seq1  GGGCTAAATTTCCACAGTGTCTGTTCTCTAGAATGGTACCACCAGCTGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAAATTTCCACAGTGTCTGTTCTCTAGAATGGTACCACCAGCTGCA  1087

seq1  AGTGTAAAATTCTTTTTGAAGAATTC  1125
      ||||||||||||||||||||||||||
seq2  AGTGTAAAATTCTTTTTGAAGAATTC  1113

seq1: chr9_62421379_62422490
seq2: B6Ng01-211N19.g_68_1197

seq1  GAATTCCAGGCCAGCCAGGGCTAACACAATGAGATTTGGTTTCAAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCAGGGCTAACACAATGAGATTTGGTTTCAAAATAT  50

seq1  TTTTCTAAATATGCATGTTCTTCCTAATAATAGTTTCAAGAGTCATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAATATGCATGTTCTTCCTAATAATAGTTTCAAGAGTCATGAAG  100

seq1  GAAATGATAAGACTGCATGGATATGGGTATGCCCACAGTTACCACGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATAAGACTGCATGGATATGGGTATGCCCACAGTTACCACGGGGG  150

seq1  TTTCAGCAGTCCTCTCAACTAAGGGGTGGTACCCCAGCAAGAATAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAGTCCTCTCAACTAAGGGGTGGTACCCCAGCAAGAATAAAAAT  200

seq1  GTGAGTGACCCAGTTTGGGCGCTTTGGTTTATTGACATATGTTGAGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGACCCAGTTTGGGCGCTTTGGTTTATTGACATATGTTGAGCATC  250

seq1  CTATCTCAGCAAGAGCACACCATTTACACACATACACATACACACACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCAGCAAGAGCACACCATTTACACACATACACATACACACACTCA  300

seq1  CACAACATACTCTCTCTCACACACACTCACATAAATATTCACACGCTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACATACTCTCTCTCACACACACTCACATAAATATTCACACGCTTAT  350

seq1  GCACTCATATATACATACATACATACACACACATTCACACATATTCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCATATATACATACATACATACACACACATTCACACATATTCACAC  400

seq1  CCATATACACACTCACACACACGCACTCACACTCATGCATGCATTCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATACACACTCACACACACGCACTCACACTCATGCATGCATTCACAC  450

seq1  ACACAGGCATACATTCACACACACTCATACATACATTTACACAGACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCATACATTCACACACACTCATACATACATTTACACAGACACAC  500

seq1  ACACACACACACACACACACACAGAGCACCTATCAAAGTGGCCACTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACAGAGCACCTATCAAAGTGGCCACTTTCT  550

seq1  ACACTGCAGAAAGGATCAATATATTTTGAAGAATTGAACATGGAGTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCAGAAAGGATCAATATATTTTGAAGAATTGAACATGGAGTGTTT  600

seq1  TCTGAGCAAAATAAAATTAAGCCGTAAGTTAAAAGCAGAAACATAGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCAAAATAAAATTAAGCCGTAAGTTAAAAGCAGAAACATAGACCC  650

seq1  CCTCCCCACAATATATGCCAATGAAATACTAATCTTCAAAGCAATACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCACAATATATGCCAATGAAATACTAATCTTCAAAGCAATACCTG  700

seq1  ACTCAAAAAATAAATCACAAGAGGCTAAACTTCCAGAAGTCAAGAGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAAAATAAATCACAAGAGGCTAAACTTCCAGAAGTCAAGAGATTT  750

seq1  CTCTCGGGGAGGCTAAGTCAGGGGTAAACAACTGCTGAGCTCGGTGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGGGGAGGCTAAGTCAGGGGTAAACAACTGCTGAGCTCGGTGAATC  800

seq1  AGGCAAGGCACAGTGCTTCTGCTTTTCAAATCGCCTCAGATAATAATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGCACAGTGCTTCTGCTTTTCAAATCGCCTCAGATAATAATTTT  850

seq1  AAAATTGCA-TTGTTACTGTTACTGTTATT--ATTCT-GTGTGTGCAAAA  896
      ||||||||| ||||||||||||||||||||   |||| ||||||||||||
seq2  AAAATTGCATTTGTTACTGTTACTGTTATTTATTTCTGGTGTGTGCAAAA  900

seq1  AATGTATACTCAACAATCCTTACAAGATAT-AAAAAGTGTAACTAACACT  945
      |||||||||||||| ||||||   |||||| |||||||||||||||||||
seq2  AATGTATACTCAAC-ATCCTTTACAGATATAAAAAAGTGTAACTAACACT  949

seq1  ATTTTAA--GGGCTACTTCAGTAGA--TAAACAC-AGAGCCTCTCCA-GG  989
      |||||||  || |||||||||||||  ||||||| ||||||||| || ||
seq2  ATTTTAAAGGGCCTACTTCAGTAGAATTAAACACAAGAGCCTCTTCAGGG  999

seq1  AATGCAGTGC-TCCATT--ATTCAACAAGCACAA----TGTGGGAGCCCG  1032
      |||||||||| ||||||   ||||  ||||||||    || || ||||||
seq2  AATGCAGTGCTTCCATTTATTTCACAAAGCACAATGGTTGAGGAAGCCCG  1049

seq1  CTAGTGGAGGTCAGGGGACCCAGGTATCT-CTTTCCACTGTGGG-TTCCA  1080
      |||||||| ||||||||| |||||||||| |||||||||||||| |||||
seq2  CTAGTGGA-GTCAGGGGA-CCAGGTATCTCCTTTCCACTGTGGGTTTCCA  1097

seq1  GGGATCAAATCCA-GGTTGTCAGGCTTCCATTG  1112
      |||||||||| || ||||||||| |||||||||
seq2  GGGATCAAATTCAGGGTTGTCAGCCTTCCATTG  1130

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information