BAC Information

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BAC

Clone NameB6Ng01-212D15
Chromosome9 (Build37)
Map Location 72,185,328 - 72,291,427
singlet/doubletdoublet
Overlap geneSuhw4, LOC100041760, Mns1, LOC666007
Upstream geneGrinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970
Downstream geneTex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212D15.bB6Ng01-212D15.g
ACCGA030077GA030078
length1,1981,101
definitionB6Ng01-212D15.b B6Ng01-212D15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,290,223 - 72,291,427)(72,185,328 - 72,186,432)
sequence
gaattccctagactagcctctcttctgtttcctgtaaaatggtgggaaga
tctggaggcttcagtccttggtgagttaggaagcacatggtggtctaggc
ctagagcacagaatccaggaggccaaggcaagagagccaccaggcatcca
cgcacagcttggcatcatagtgcgtctcatagtgcgttccagtccaggga
tgtacattaagacacctcagaagtaaagatataaacaaaaaaataacaca
tgaaaactgttcaacgttattagccacaggaagtgtggactaggaagcag
agggatggcccgagtctgcttcccagcatgtgttccagatgctccccact
acccggacccaagagacccacagtccctgaggcacctgttcagatgaaca
tatccacatgcagacaaaatctacacataattaataaaaatatatctttc
acacaatctacacacaattaataaaaatacatctttttttttaaggcaag
ttaaaagccaggaggtagtggtgaacacctttaataccagcttgggagac
agagacaggtgaatctctgagttcaaggccagcctggtctacagagtgag
tcacacacaaacacacatatactggtgacaccaaatagtgaaaaactgca
ccatctatacattgctaggcactctggaaatcaacctagtagtttgtcaa
aaggctgacctacaattactacacaaacaatacactcttaagcacttgtc
tcagaaaaaggaaacatgtttctttaaaaatctgtatttaaatatccaca
tcaaatttatttataatatccagtattggaaattcctcatcaggtgaagg
gtcaagaatactgtgtatatccacacaacagaatactacttggcaataaa
aaggaaataattccataaaataaaaataaatacacataaaaatacaaata
aaaaaaaacctttaagagataggattcaaaacacgaactcttagcggaca
ctccccgtctctggctccctccatgcaaaggcataaggttcgtagtcagc
tgggtgtgtgttcatcagaggagcacaccctcagccagcgaggctcagct
aatgagacagcgggggagggatcagcacacctgtgttttctggccgtaag
tgtgtgcaacattgattgctgcagctgccttaaattttccgagtaacg
gaattcagatccacctgcctctgtctcttgagtgctggaattaaaggctt
gtgcccccatggctggctatttcccatcttcaaacatgcatattttgttg
ttaaactgactgtaacagtgcttacattgcatgataatttttttaaccat
aagcaaaataatttattaaagagattctaaagaattctacagtcccctca
acgaatttcatctagaattaataagagaaacaaagtcatttgaaaccaac
tttggtcttctttagtttgacgtactaagtgtcttgctttctctgggcct
aaattttctttaccttttcttcagcatatgaactttccctattaaagtcc
caaatgtaacatttgaaacctccacattttcaaaatcaagaaatttgagt
ataattttaaaattcataattatcacatatttcattttaagaagtgcagt
aatcaagctttggaaaagaatagtttatctcctgacagacaggcagggag
actagttaatgatgctgccatgttgaactattcaggcatgtatattccag
tatctaactagctattttatgcaattcagcatttagtgaagattggacta
cttgtgatgagtagcatcacatagcctgtatctgatagtggctgtcatgt
gatccatctttggagcctttacattgttctagtttttatctttgactaaa
tgaaagcctagattgtaaattccattggaatgtgggctatacttcctttt
tgctcaccaatataacacctagcagtttggtatctaaagagagccttcct
tattcagtatatattaagtgaatgagtgctatacctcacttttttatgtg
gcttgcctacattaaacaagctcatagcagagccaagaccagtgtttgac
tcctagcttttttcagttgatacaaggagtgaatgctcttaaaacattat
tactttttggggaggaagtacaggaatgaactcaagactttgagtattct
aggttgtgctctactctagcttttcctttatctttgaaacatgatgttta
catacataatttggacataggtatgccacttcaaccttatatatagcaaa
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_72290223_72291427
seq2: B6Ng01-212D15.b_44_1241 (reverse)

seq1  CGTTACT--GAAAATTTA--GCAGCTTGCAGCAACTCATGTTTGCACACA  46
      |||||||  |||||||||  ||||| |||||||| |||   |||||||||
seq2  CGTTACTCGGAAAATTTAAGGCAGC-TGCAGCAA-TCAATGTTGCACACA  48

seq1  CCTACCGGGGCAG-AAACACAGGTGTGCTGATTCCCCTCCCCGCTGTCTC  95
      | |||  || ||| ||||||||||||||||| ||||  ||||||||||||
seq2  CTTAC--GGCCAGAAAACACAGGTGTGCTGA-TCCCTCCCCCGCTGTCTC  95

seq1  ATAGGCTGAGCCTCGGCTGGCTG-GGGTGTGCTCCCTTCTGATGAACACA  144
      ||  |||||||||| |||||||| |||||||||||  |||||||||||||
seq2  ATTAGCTGAGCCTC-GCTGGCTGAGGGTGTGCTCC--TCTGATGAACACA  142

seq1  CACCCAGCTGACTACGAACCTTTATGCCCTTTGCATGGAGGGAGCCAGAG  194
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  CACCCAGCTGACTACGAACC-TTATG-CCTTTGCATGGAGGGAGCCAGAG  190

seq1  ACGGGGAGTGTCCGCTAAGAGTTCGTGTTTTGAATCCTATCTTCTTAAAG  244
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACGGGGAGTGTCCGCTAAGAGTTCGTGTTTTGAATCCTATC-TCTTAAAG  239

seq1  GTTTTTTTTTATTTGTATTTTTATGTGTATTTTATTTTTTATTTTTATGG  294
      ||||||||||||||||||||||||||||| |||||||||   ||||||||
seq2  GTTTTTTTTTATTTGTATTTTTATGTGTA-TTTATTTTT--ATTTTATGG  286

seq1  -ATTATTTCCTTTTTATTGCCAAGTAGTATTCTGTTGTGTGGATATACAC  343
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTCCTTTTTATTGCCAAGTAGTATTCTGTTGTGTGGATATACAC  336

seq1  AGTATTCTTGACCCTTCACCTGATGAGGAATTTCCAATACTGGATATTAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCTTGACCCTTCACCTGATGAGGAATTTCCAATACTGGATATTAT  386

seq1  AAATAAATTTGATGTGGATATTTAAATACAGATTTTTAAAGAAACATGTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTTGATGTGGATATTTAAATACAGATTTTTAAAGAAACATGTT  436

seq1  TCCTTTTTCTGAGACAAGTGCTTAAGAGTGTATTGTTTGTGTAGTAATTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTCTGAGACAAGTGCTTAAGAGTGTATTGTTTGTGTAGTAATTG  486

seq1  TAGGTCAGCCTTTTGACAAACTACTAGGTTGATTTCCAGAGTGCCTAGCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAGCCTTTTGACAAACTACTAGGTTGATTTCCAGAGTGCCTAGCA  536

seq1  ATGTATAGATGGTGCAGTTTTTCACTATTTGGTGTCACCAGTATATGTGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGATGGTGCAGTTTTTCACTATTTGGTGTCACCAGTATATGTGT  586

seq1  GTTTGTGTGTGACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAGAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTGTGACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAGAT  636

seq1  TCACCTGTCTCTGTCTCCCAAGCTGGTATTAAAGGTGTTCACCACTACCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGTCTCTGTCTCCCAAGCTGGTATTAAAGGTGTTCACCACTACCT  686

seq1  CCTGGCTTTTAACTTGCCTTAAAAAAAAAGATGTATTTTTATTAATTGTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTTTAACTTGCCTTAAAAAAAAAGATGTATTTTTATTAATTGTG  736

seq1  TGTAGATTGTGTGAAAGATATATTTTTATTAATTATGTGTAGATTTTGTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTGTGTGAAAGATATATTTTTATTAATTATGTGTAGATTTTGTC  786

seq1  TGCATGTGGATATGTTCATCTGAACAGGTGCCTCAGGGACTGTGGGTCTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGGATATGTTCATCTGAACAGGTGCCTCAGGGACTGTGGGTCTC  836

seq1  TTGGGTCCGGGTAGTGGGGAGCATCTGGAACACATGCTGGGAAGCAGACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCCGGGTAGTGGGGAGCATCTGGAACACATGCTGGGAAGCAGACT  886

seq1  CGGGCCATCCCTCTGCTTCCTAGTCCACACTTCCTGTGGCTAATAACGTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCATCCCTCTGCTTCCTAGTCCACACTTCCTGTGGCTAATAACGTT  936

seq1  GAACAGTTTTCATGTGTTATTTTTTTGTTTATATCTTTACTTCTGAGGTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTTTTCATGTGTTATTTTTTTGTTTATATCTTTACTTCTGAGGTG  986

seq1  TCTTAATGTACATCCCTGGACTGGAACGCACTATGAGACGCACTATGATG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGTACATCCCTGGACTGGAACGCACTATGAGACGCACTATGATG  1036

seq1  CCAAGCTGTGCGTGGATGCCTGGTGGCTCTCTTGCCTTGGCCTCCTGGAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGTGCGTGGATGCCTGGTGGCTCTCTTGCCTTGGCCTCCTGGAT  1086

seq1  TCTGTGCTCTAGGCCTAGACCACCATGTGCTTCCTAACTCACCAAGGACT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTCTAGGCCTAGACCACCATGTGCTTCCTAACTCACCAAGGACT  1136

seq1  GAAGCCTCCAGATCTTCCCACCATTTTACAGGAAACAGAAGAGAGGCTAG  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTCCAGATCTTCCCACCATTTTACAGGAAACAGAAGAGAGGCTAG  1186

seq1  TCTAGGGAATTC  1205
      ||||||||||||
seq2  TCTAGGGAATTC  1198

seq1: chr9_72185328_72186432
seq2: B6Ng01-212D15.g_66_1166

seq1  GAATTCAGATCCACCTGCCTCTGTCTCTTGAGTGCTGGAATTAAAGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCACCTGCCTCTGTCTCTTGAGTGCTGGAATTAAAGGCTT  50

seq1  GTGCCCCCATGGCTGGCTATTTCCCATCTTCAAACATGCATATTTTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCCATGGCTGGCTATTTCCCATCTTCAAACATGCATATTTTGTTG  100

seq1  TTAAACTGACTGTAACAGTGCTTACATTGCATGATAATTTTTTTAACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGACTGTAACAGTGCTTACATTGCATGATAATTTTTTTAACCAT  150

seq1  AAGCAAAATAATTTATTAAAGAGATTCTAAAGAATTCTACAGTCCCCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAATAATTTATTAAAGAGATTCTAAAGAATTCTACAGTCCCCTCA  200

seq1  ACGAATTTCATCTAGAATTAATAAGAGAAACAAAGTCATTTGAAACCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATTTCATCTAGAATTAATAAGAGAAACAAAGTCATTTGAAACCAAC  250

seq1  TTTGGTCTTCTTTAGTTTGACGTACTAAGTGTCTTGCTTTCTCTGGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTTCTTTAGTTTGACGTACTAAGTGTCTTGCTTTCTCTGGGCCT  300

seq1  AAATTTTCTTTACCTTTTCTTCAGCATATGAACTTTCCCTATTAAAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTTTACCTTTTCTTCAGCATATGAACTTTCCCTATTAAAGTCC  350

seq1  CAAATGTAACATTTGAAACCTCCACATTTTCAAAATCAAGAAATTTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTAACATTTGAAACCTCCACATTTTCAAAATCAAGAAATTTGAGT  400

seq1  ATAATTTTAAAATTCATAATTATCACATATTTCATTTTAAGAAGTGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTAAAATTCATAATTATCACATATTTCATTTTAAGAAGTGCAGT  450

seq1  AATCAAGCTTTGGAAAAGAATAGTTTATCTCCTGACAGACAGGCAGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGCTTTGGAAAAGAATAGTTTATCTCCTGACAGACAGGCAGGGAG  500

seq1  ACTAGTTAATGATGCTGCCATGTTGAACTATTCAGGCATGTATATTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTAATGATGCTGCCATGTTGAACTATTCAGGCATGTATATTCCAG  550

seq1  TATCTAACTAGCTATTTTATGCAATTCAGCATTTAGTGAAGATTGGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAACTAGCTATTTTATGCAATTCAGCATTTAGTGAAGATTGGACTA  600

seq1  CTTGTGATGAGTAGCATCACATAGCCTGTATCTGATAGTGGCTGTCATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGATGAGTAGCATCACATAGCCTGTATCTGATAGTGGCTGTCATGT  650

seq1  GATCCATCTTTGGAGCCTTTACATTGTTCTAGTTTTTATCTTTGACTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATCTTTGGAGCCTTTACATTGTTCTAGTTTTTATCTTTGACTAAA  700

seq1  TGAAAGCCTAGATTGTAAATTCCATTGGAATGTGGGCTATACTTCCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCCTAGATTGTAAATTCCATTGGAATGTGGGCTATACTTCCTTTT  750

seq1  TGCTCACCAATATAACACCTAGCAGTTTGGTATCTAAAGAGAGCCTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACCAATATAACACCTAGCAGTTTGGTATCTAAAGAGAGCCTTCCT  800

seq1  TATTCAGTATATATTAAGTGAATGAGTGCTATACCTCACTTTTTTATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTATATATTAAGTGAATGAGTGCTATACCTCACTTTTTTATGTG  850

seq1  GCTTGCCTACATTAAACAAGCTCATAGCAGAGCCAAGACCAGTGTTTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTACATTAAACAAGCTCATAGCAGAGCCAAGACCAGTGTTTGAC  900

seq1  TCCTAGCTTTTTTCAGTTGATACAAGGAGTGAATGCTCTTAAAACATTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCTTTTTTCAGTTGATACAAGGAGTGAATGCTCTTAAAACATTAT  950

seq1  TACTTTTTGGGGAGGAAGTACAGGGAATGAACTCAAGACTTTGAGTATTC  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TACTTTTTGGGGAGGAAGTACA-GGAATGAACTCAAGACTTTGAGTATTC  999

seq1  TAGGTTGTGCTCTACTTCTAAGCTTTTCCTTTATCTTTGAAACATGAATG  1050
      ||||||||||||||| ||| |||||||||||||||||||||||||| |||
seq2  TAGGTTGTGCTCTAC-TCT-AGCTTTTCCTTTATCTTTGAAACATG-ATG  1046

seq1  TTTTACATACATAATTTGGACATAGGTATGCCACTTTCAAACT--TATAT  1098
       ||||||||||||||||||||||||||||||||| ||||| ||  |||||
seq2  -TTTACATACATAATTTGGACATAGGTATGCCAC-TTCAACCTTATATAT  1094

seq1  AGCAAAG  1105
      |||||||
seq2  AGCAAAG  1101