BAC Information

Click to search

BAC

Clone NameB6Ng01-212P20
Chromosome9 (Build37)
Map Location 5,335,586 - 5,336,653
singlet/doubletsinglet
Overlap geneCasp4
Upstream geneLOC664860, 8430410K20Rik, Gria4, EG664889, Casp1
Downstream geneCasp12, LOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212P20.bB6Ng01-212P20.g
ACCGA030644GA030645
length1,054811
definitionB6Ng01-212P20.b B6Ng01-212P20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataagtattctttccttaatttcactagttctggaatttcagga
atagaatgtgatccttggccaagatcacttcttcaagctgaagaaatgag
attcagttgcttgttgcttctgcagagtagacaaagaatacgtagattat
aaatatatttattccacagagaattcattccctcactcattccttattgc
caaccatgttcttgctaatcccccattgacatccacttgggtctttatgg
tttatagaggagataaaaagatacacctcaagacagaaatgatataaaca
gtaataaatatatgggcataatctaacttacttcagtaactgtcaaatct
tctaccatttattgttgctttttgggtatttaccttgttttttctataac
ctttatcatttgtttgattgtttgaggtgataaaatggaatctaaatgtt
tggacatataaaaaaaatgtgccagtagtcaataaactaggccaattaag
agaccaacttgaatacatccaagcattcaggtctctaaaaggaaatatac
ttactgttctcagttgccaggaaagaggtagaaatatctcgtcaaggttg
cccgatcaatggtgggcatctgggaatgaatacttgccttttcaaatgat
tgttgcacctaaaatcaaaataatgatgtgtactatataagtttcaatat
tcacagaaagcatgcttcattgcagcacagaaaactataaggatgaaaag
aatttaggagttgttgggatgaggctaatatcgaaaggacccagatgtag
ctgtctcttgtgagactatgccggggcctagcaaacacagaagtggatgc
ccacagtcagctaatggatggatcacagggctcccaatggaggagctaga
gaaagtacccaaggagctaaagggatctgcaaccctataggtggacacat
tatgactaaccagtaccccgagctctgactctagctgcatatgtatcaaa
gatggcctagtcgcatcactgaaagagagtccatgaccacaaacttatat
gccc

gaattcttatcattgttctctttgtttctaatttattgtttttaccactg
aatttggtcattgtcttttatctattctgcttggatatgattatttcttt
tttttctagagctttcaggtttgctgctaagtgaataacatgaaatatct
caaatttctttatgaacacacttagtgcaatgaactttccttgtagcact
gctttcattgactgtcattagttttggtatgtagtgccttcactttcagt
gaattctagaaagtctttaatttctttatttcttccccagaactagtgat
gattgagttgagaattgttaagtttccatggatttataggctttttattg
tttttgttgttgtatatgttcaggtttaatacatagtgatctgagaagat
acaaggggtttttccaactttttaaaatctactgaggtttgcattgtgat
gaagaatatggttgattttggagaaagttctgttaaatcctaagaaaaat
gtatcttcttttttgtttgggtgaaattttctgtagatatctgttagctc
cttttaattcataaaatctgtgagtttcattattccaatgtctaatttcc
atcttgatagcctgtccattggtgacagtgaggtgttcaaatctctcact
attaatgttcagggttggatgtatgaagtaaacttgagtaatagtttttt
tgtgtgtgtattgtttttgtttttatcggtttggttttggtttgggcaaa
gatattcagagttgagatgtcttcttggtgtacttttgctatgataagga
taaaatgccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5335586_5336653
seq2: B6Ng01-212P20.b_51_1104 (reverse)

seq1  GGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCC  50
      |||||||| ||||||||| |||  || || |||||||| ||||||||  |
seq2  GGGCATAT-AAGTTTGTG-GTC--AT-GGACTCTCTTT-CAGTGATG--C  42

seq1  GACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGG  100
      |||||||||||| |||||||||||||||||||||||| |||||| |||||
seq2  GACTAGGCCATC-TTTGATACATATGCAGCTAGAGTC-AGAGCT-CGGGG  89

seq1  TACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTT  150
      |||||||||| |||||||||   |||||||||||||||||||||||||||
seq2  TACTGGTTAG-TCATAATGT--GTCCACCTATAGGGTTGCAGATCCCTTT  136

seq1  AGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCA  186

seq1  TCCATTAGCTGACTGTGGGCATCCACTTCTGTGTTTGCTAGGCCCCGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAGCTGACTGTGGGCATCCACTTCTGTGTTTGCTAGGCCCCGGCA  236

seq1  TAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATATTAGCCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATATTAGCCTCAT  286

seq1  CCCAACAACTCCTAAATTCTTTTCATCCTTATAGTTTTCTGTGCTGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAACTCCTAAATTCTTTTCATCCTTATAGTTTTCTGTGCTGCAAT  336

seq1  GAAGCATGCTTTCTGTGAATATTGAAACTTATATAGTACACATCATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGCTTTCTGTGAATATTGAAACTTATATAGTACACATCATTATT  386

seq1  TTGATTTTAGGTGCAACAATCATTTGAAAAGGCAAGTATTCATTCCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTAGGTGCAACAATCATTTGAAAAGGCAAGTATTCATTCCCAGA  436

seq1  TGCCCACCATTGATCGGGCAACCTTGACGAGATATTTCTACCTCTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACCATTGATCGGGCAACCTTGACGAGATATTTCTACCTCTTTCCT  486

seq1  GGCAACTGAGAACAGTAAGTATATTTCCTTTTAGAGACCTGAATGCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTGAGAACAGTAAGTATATTTCCTTTTAGAGACCTGAATGCTTGG  536

seq1  ATGTATTCAAGTTGGTCTCTTAATTGGCCTAGTTTATTGACTACTGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCAAGTTGGTCTCTTAATTGGCCTAGTTTATTGACTACTGGCAC  586

seq1  ATTTTTTTTATATGTCCAAACATTTAGATTCCATTTTATCACCTCAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTATATGTCCAAACATTTAGATTCCATTTTATCACCTCAAACA  636

seq1  ATCAAACAAATGATAAAGGTTATAGAAAAAACAAGGTAAATACCCAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACAAATGATAAAGGTTATAGAAAAAACAAGGTAAATACCCAAAAA  686

seq1  GCAACAATAAATGGTAGAAGATTTGACAGTTACTGAAGTAAGTTAGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAATAAATGGTAGAAGATTTGACAGTTACTGAAGTAAGTTAGATTA  736

seq1  TGCCCATATATTTATTACTGTTTATATCATTTCTGTCTTGAGGTGTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATATATTTATTACTGTTTATATCATTTCTGTCTTGAGGTGTATCT  786

seq1  TTTTATCTCCTCTATAAACCATAAAGACCCAAGTGGATGTCAATGGGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTCCTCTATAAACCATAAAGACCCAAGTGGATGTCAATGGGGGA  836

seq1  TTAGCAAGAACATGGTTGGCAATAAGGAATGAGTGAGGGAATGAATTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAGAACATGGTTGGCAATAAGGAATGAGTGAGGGAATGAATTCTC  886

seq1  TGTGGAATAAATATATTTATAATCTACGTATTCTTTGTCTACTCTGCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATAAATATATTTATAATCTACGTATTCTTTGTCTACTCTGCAGA  936

seq1  AGCAACAAGCAACTGAATCTCATTTCTTCAGCTTGAAGAAGTGATCTTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAAGCAACTGAATCTCATTTCTTCAGCTTGAAGAAGTGATCTTGG  986

seq1  CCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAGGA  1036

seq1  AAGAATACTTATGAATTC  1068
      ||||||||||||||||||
seq2  AAGAATACTTATGAATTC  1054


| Home | SequenceCutter | Blast | Download |