BAC Information

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BAC

Clone NameB6Ng01-214N02
Chromosome9 (Build37)
Map Location 116,562,998 - 116,727,595
singlet/doubletdoublet
Overlap geneRbms3
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneLOC665840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214N02.bB6Ng01-214N02.g
ACCGA031963GA031964
length1,001939
definitionB6Ng01-214N02.b B6Ng01-214N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,562,998 - 116,563,980)(116,726,394 - 116,727,595)
sequence
gaattccttcttttaaaaaaatgaaattattataaagtgtttaaaagttg
ccagataatcccaacagtctggaagagctttgagtttgaggccagcctgg
tctacataggaagttacagatcagctaggtacctagtgaggctgtgtctc
aaaacaagatcaactacacacacacacacacacatacacacacacacaca
cacacacacaccataactactctgcttgtagaaagacttgcagacacagt
tgtagagatctctgtcctaaaattaggctcaaaaatacagggttttttgt
tttgttttgttttgttttgtttttgtttgtttgtttttttgtttttgtca
tgtaaccttctcataatgatttattattcatttttttcttacctacctgt
tttaaaatgcaaaagagccattaacttggaaaattgcaaaatccctatga
tattaatcttactttaggccatacacaatgactagtcagcataaaataag
gcaaattttctttagatatttcatccactattacataattccgaaaaaaa
tgaattaaatcaggatactatttggatggatgtgtccatccaagtcaagc
tattaactagatcataccttccatttcaagtgtactggtggcatgccaaa
agattagaataccttacttcttatgctaaatgtaatttgcattagtggac
ccagataatatactaatatttttatattctacaacaaaaggactaaatca
taatagttttttttattaatctctcaacttgattttgctgagggttaaat
tctataacctgaaacatggaagacataattgaaagaacccagccagacat
aatgaagtaaaatttgggtgttaacttggaattgaagcacaggtgccctg
gcctctgccaaccaattgtgtgatattaaggaagagccaattaacctcct
ggagtctctcatcttctccaacagagaaccgcttgttgcatagaagctca
g

gaattcttgtgctgacatccaggtggtttctttgtttggttttgtgtccc
agatggtaacaccctctgcatcccagggtagcctcagccttccgagtgcc
tggattataagtgcatgttcagcaggcctttcttctagcagtattggatt
tactggtttgtggaaggcgagtagaattaaaagaacaaacaccaagaaag
cagagagcagaaactgtgagcctgtcttgcttgtcagcttctgggaaatg
gacgtagaatgagtcctcctttctctgagaattttagattttaaatcttg
gggagcagaacctccctcagctgacctgatggcacagactaggacagagc
ttttagttctaccgtgtgctaataaagcaaatcgttctaccatgtgctaa
tagagccgacaatattcctacctatgcggtagcacttggtctgtgttctg
gaacaatggtggctcttgcttctgctattaggattagaaataaaattttg
cagagtccctcctttttctaaaagaaaaaatattactaaatttattgtat
tgtgtgtggagaagaagggacatgtgttatagcccatgttatgcaaaggt
cagaggacaacttgtaagggttggtttcctccttccacgtgggtgttcta
agccttgaactcgcatggtgaggctctaaggcaggtgcctttaggtgctg
cggcattcaggcatttcaaatgtcgctacttttaaaagtccacccccttt
tttctcactcaccttttttccttgagaattccctttcttgaagcacaaag
cagagatgattggacaagtgttcttgattctcctggggcttaatgcataa
tgtaatttagtccaagggtttcctgctgtgacagacaccatgggccaaag
ttaactctttattaaaggacatttaattcggggctgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116562998_116563980
seq2: B6Ng01-214N02.b_49_1049

seq1  GAATTCCTTCTTTTAAAAAAATGAAATTATTATAAAGTGTTTAAAAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTTTTAAAAAAATGAAATTATTATAAAGTGTTTAAAAGTTG  50

seq1  CCAGATAATCCCAACAGTCTGGAAGAGCTTTGAGTTTGAGGCCAGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAATCCCAACAGTCTGGAAGAGCTTTGAGTTTGAGGCCAGCCTGG  100

seq1  TCTACATAGGAAGTTACAGATCAGCTAGGTACCTAGTGAGGCTGTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATAGGAAGTTACAGATCAGCTAGGTACCTAGTGAGGCTGTGTCTC  150

seq1  AAAACAAGATCAACTACACACACACACACACACATACACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGATCAACTACACACACACACACACACATACACACACACACACA  200

seq1  CACACACACACCATAACTACTCTGCTTGTAGAAAGACTTGCAGACACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACCATAACTACTCTGCTTGTAGAAAGACTTGCAGACACAGT  250

seq1  TGTAGAGATCTCTGTCCTAAAATTAGGCTCAAAAATACAGGGTTTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGATCTCTGTCCTAAAATTAGGCTCAAAAATACAGGGTTTTTTGT  300

seq1  TTTGTTTTGTTTTGTTTTGTTTTTGTTTGTTTGTTTTTTTGTTTTTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTGTTTTTGTTTGTTTGTTTTTTTGTTTTTGTCA  350

seq1  TGTAACCTTCTCATAATGATTTATTATTCATTTTTTTCTTACCTACCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCTTCTCATAATGATTTATTATTCATTTTTTTCTTACCTACCTGT  400

seq1  TTTAAAATGCAAAAGAGCCATTAACTTGGAAAATTGCAAAATCCCTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGCAAAAGAGCCATTAACTTGGAAAATTGCAAAATCCCTATGA  450

seq1  TATTAATCTTACTTTAGGCCATACACAATGACTAGTCAGCATAAAATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATCTTACTTTAGGCCATACACAATGACTAGTCAGCATAAAATAAG  500

seq1  GCAAATTTTCTTTAGATATTTCATCCACTATTACATAATTCCGAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTTTCTTTAGATATTTCATCCACTATTACATAATTCCGAAAAAAA  550

seq1  TGAATTAAATCAGGATACTATTTGGATGGATGTGTCCATCCAAGTCAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAATCAGGATACTATTTGGATGGATGTGTCCATCCAAGTCAAGC  600

seq1  TATTAACTAGATCATACCTTCCATTTCAAGTGTACTGGTGGCATGCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACTAGATCATACCTTCCATTTCAAGTGTACTGGTGGCATGCCAAA  650

seq1  AGATTAGAATACCTTACTTCTTATGCT-AATGTAATTTGCATTAGTGGAC  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGATTAGAATACCTTACTTCTTATGCTAAATGTAATTTGCATTAGTGGAC  700

seq1  CCAGATAATATACTAATA-TTTTATATTCTACAACAAAAGGACTAAATCA  748
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCAGATAATATACTAATATTTTTATATTCTACAACAAAAGGACTAAATCA  750

seq1  TAATAGTTTTTTTTATTAATCTCTCAACTTGA-TTTGCTGAGGGTTAAAT  797
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAATAGTTTTTTTTATTAATCTCTCAACTTGATTTTGCTGAGGGTTAAAT  800

seq1  TCTATAACCTGAAACATGG-AGACATAAT--GAAGAACCCAGCCAGACAT  844
      ||||||||||||||||||| |||||||||   ||||||||||||||||||
seq2  TCTATAACCTGAAACATGGAAGACATAATTGAAAGAACCCAGCCAGACAT  850

seq1  AATGAAGTAAAATT--GGTGTTAACT--GGATTGAAGCACAGGTGCCCTG  890
      ||||||||||||||  ||||||||||  | ||||||||||||||||||||
seq2  AATGAAGTAAAATTTGGGTGTTAACTTGGAATTGAAGCACAGGTGCCCTG  900

seq1  G-CTCTGCC-ACCAACTGTGTGATATTA--GGAGAGCCAATTAACCTCCT  936
      | ||||||| ||||| ||||||||||||  | ||||||||||||||||||
seq2  GCCTCTGCCAACCAATTGTGTGATATTAAGGAAGAGCCAATTAACCTCCT  950

seq1  GGAGTCTCTCATCTTCTCC-ACAGAG-ACCGC-TGTTGCATAG-AGCTCA  982
      ||||||||||||||||||| |||||| ||||| |||||||||| ||||||
seq2  GGAGTCTCTCATCTTCTCCAACAGAGAACCGCTTGTTGCATAGAAGCTCA  1000

seq1  G  983
      |
seq2  G  1001


seq1: chr9_116726394_116727595
seq2: B6Ng01-214N02.g_68_1006 (reverse)

seq1  ACCCAGCACCTTCTCTTGCTATGTGTGGTTGTTTGAATGTGTTTAACCCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGGAGTAGCCCTGCTGGGAGGTGTGGCCTTGTTGGTGTAGGTGTGGCCTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTTGGAGGAAGTGTGTCAATGTGTATGTAGGCTTTGAGAGCCTCCTCCTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACCATGTGGAGGTTAGTCTGCTCCTGGTTTCCTTTGAGTGTAACTCTTAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCTCTAGCTCCAAGCCTGCCTGGATGCTGCCTTGCTCCTGCCTTGATG  250
                                                        
seq2  --------------------------------------------------  0

seq1  ATAATGGACTGAACCTCCTAACCTGTAAACCAG-CCCGAATTAAATGTCC  299
                                 | |||| ||||||||||||||||
seq2  ---------------------------ACCCAGCCCCGAATTAAATGTCC  23

seq1  TTTA--TAAGAGTTACCTT--GGCCATGGTGTCTGTTCACAGCAGGAAAA  345
      ||||   |||||||| |||  | |||||||||||| ||||||||||||| 
seq2  TTTAATAAAGAGTTAACTTTGGCCCATGGTGTCTG-TCACAGCAGGAAAC  72

seq1  CCTT-GACTAA--TACATTATGCATT-AGCCCCAGGAGAATCAAGAACAC  391
      |||| ||||||  ||||||||||||| |||||||||||||||||||||||
seq2  CCTTGGACTAAATTACATTATGCATTAAGCCCCAGGAGAATCAAGAACAC  122

seq1  -TGTCCAATCATCTCTGCTTTGTGCTTC-AGAAAGGGAATTCTCAAGG-A  438
       ||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  TTGTCCAATCATCTCTGCTTTGTGCTTCAAGAAAGGGAATTCTCAAGGAA  172

seq1  AAAAGGTGAGTGAG-AAAAAGGGGGTGGACTTTTAAAAGTAGCGACATT-  486
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  AAAAGGTGAGTGAGAAAAAAGGGGGTGGACTTTTAAAAGTAGCGACATTT  222

seq1  -GAATGCCTGAATGCCGCAGCACCTAAAGGCACCTGCCTTAGAGCCTCAC  535
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCTGAATGCCGCAGCACCTAAAGGCACCTGCCTTAGAGCCTCAC  272

seq1  CATGCGAGTTCAAGGCTTAGAACACCCACGTGGAAGGAGGAAACCAACCC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGAGTTCAAGGCTTAGAACACCCACGTGGAAGGAGGAAACCAACCC  322

seq1  TTACAAGTTGTCCTCTGACCTTTGCATAACATGGGCTATAACACATGTCC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGTTGTCCTCTGACCTTTGCATAACATGGGCTATAACACATGTCC  372

seq1  CTTCTTCTCCACACACAATACAATAAATTTAGTAATATTTTTTCTTTTAG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTCCACACACAATACAATAAATTTAGTAATATTTTTTCTTTTAG  422

seq1  AAAAAGGAGGGACTCTGCAAAATTTTATTTCTAATCCTAATAGCAGAAGC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAGGGACTCTGCAAAATTTTATTTCTAATCCTAATAGCAGAAGC  472

seq1  AAGAGCCACCATTGTTCCAGAACACAGACCAAGTGCTACCGCATAGGTAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCACCATTGTTCCAGAACACAGACCAAGTGCTACCGCATAGGTAG  522

seq1  GAATATTGTCGGCTCTATTAGCACATGGTAGAACGATTTGCTTTATTAGC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTGTCGGCTCTATTAGCACATGGTAGAACGATTTGCTTTATTAGC  572

seq1  ACACGGTAGAACTAAAAGCTCTGTCCTAGTCTGTGCCATCAGGTCAGCTG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGTAGAACTAAAAGCTCTGTCCTAGTCTGTGCCATCAGGTCAGCTG  622

seq1  AGGGAGGTTCTGCTCCCCAAGATTTAAAATCTAAAATTCTCAGAGAAAGG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTTCTGCTCCCCAAGATTTAAAATCTAAAATTCTCAGAGAAAGG  672

seq1  AGGACTCATTCTACGTCCATTTCCCAGAAGCTGACAAGCAAGACAGGCTC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCATTCTACGTCCATTTCCCAGAAGCTGACAAGCAAGACAGGCTC  722

seq1  ACAGTTTCTGCTCTCTGCTTTCTTGGTGTTTGTTCTTTTAATTCTACTCG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCTGCTCTCTGCTTTCTTGGTGTTTGTTCTTTTAATTCTACTCG  772

seq1  CCTTCCACAAACCAGTAAATCCAATACTGCTAGAAGAAAGGCCTGCTGAA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCACAAACCAGTAAATCCAATACTGCTAGAAGAAAGGCCTGCTGAA  822

seq1  CATGCACTTATAATCCAGGCACTCGGAAGGCTGAGGCTACCCTGGGATGC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACTTATAATCCAGGCACTCGGAAGGCTGAGGCTACCCTGGGATGC  872

seq1  AGAGGGTGTTACCATCTGGGACACAAAACCAAACAAAGAAACCACCTGGA  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGTTACCATCTGGGACACAAAACCAAACAAAGAAACCACCTGGA  922

seq1  TGTCAGCACAAGAATTC  1202
      |||||||||||||||||
seq2  TGTCAGCACAAGAATTC  939


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