BAC Information

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BAC

Clone NameB6Ng01-215C03
Chromosome9 (Build37)
Map Location 23,399,123 - 23,534,740
singlet/doubletdoublet
Overlap geneLOC100040866
Upstream geneBbs9, Bmper
Downstream geneLOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4, Tbx20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215C03.bB6Ng01-215C03.g
ACCGA032189GA032190
length1,138622
definitionB6Ng01-215C03.b B6Ng01-215C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,533,602 - 23,534,740)(23,399,123 - 23,399,744)
sequence
gaattcaaaagaaaacatagtttataatatttctgtgtttttcaaagaaa
ccaaaactttaaaattatcactagagttgtcctttgattcaatgttgaaa
ttctgtgtactgatgattggttggacagtgactgctgtttagttctcaac
ttaggaaggcagaggcagctatggctgtctgagtttctctggatacactg
gtgaagagacaaggcctacagaaatgttcagacagttctgttactcccag
ggacaaaggcacatatggcttttttggggatatctatgggtataaaactg
gagactggttatctaaaaccctctcgttagatccagatcaagggatctgg
aaacccacagagacatgtgagcagggaatgtataatatcagattccttag
ggcagaaaatggaataggtatcacttggctgttcaatcaaggaaacctca
ctgagaaggaattccattagggcatcattgcctagggtcttgtggggcat
tgtttgagaaaaccagtcagcttttccttactatagagatcacataacca
caaagcacaagtgcattctgccatagcgagctcctctcagcccctctcat
ctgcttcctccatggtatctgcacaaggaaatgatgcaaaagtcatatgg
ggaagtcagcaagaccagacttcttgttgggagaagcaagtcccacaggg
aagatgcaagaagggattgcactagactgatcctattttctccaagctca
tgaagtcaagatgccatgacttctgggttgcgagtgttcaacttctcaag
tcaatgctgcaccatttcctgagaccaaggagaaagacattggtctgtag
gagaaagattagcatgagcaaaggttcacacagtagggctattaaatatg
tcagctacataaggagaatttgtcttagcaccccagtaagtctaaagaaa
gttagacaggcaaacttgctcagttttaaactttgtttctaatgtgattt
atagcttagtgaaacctttgatcatcccataattctcctttccccttggg
tgagaaaactcagatccactacacataaatgaaggggaacttgccaacca
cgctcgccccctcggtttacaaattaggcaaaagatga

gaattcataaaactgccattttataaaaaatacccatgtagctactaagc
atggtgacctacacttgaaattccagcattcaaggggctgaggcaggact
gtcacaaggctggattcagatgagatcaggtctcaaataaataaataaat
aaataaataaataaaataacccaagaatgaggaagtgaggcatggaagtt
tctggaaagttctcttttctgtttcatttgtaagaatagtttgacaatag
attgcttaggttttttgttgaataaaaaaatcttttcttctgtatgtaaa
cctgttattctcttgtctgtggtatctgcttttcctgtaaaacgtatctc
accacagctgtgattgcctggacaagatcaagcacattacacaagcacat
tacagcatagacagaggagggcctcatgagctcattactaactgaggagc
tgtggatagttggtagcttctaggagagagagaactagttctttaacagt
gcagtctggagcaggtcctgtggagacctatgagtacatgggcagcacaa
actggatttgatagtcataaaaacaaaaaatgagggacatgaagttggga
gggggtgtagagatggggagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_23533602_23534740
seq2: B6Ng01-215C03.b_44_1181 (reverse)

seq1  TCATCTTTTTCCCTATTTGTAAAACGAGGGGGCGAGGCCGT-GTTTGCAA  49
      ||||||||| ||  ||||||||| ||||||||||||  ||| ||| ||||
seq2  TCATCTTTTGCCTAATTTGTAAACCGAGGGGGCGAG--CGTGGTTGGCAA  48

seq1  GTTTCCCCCTTTCATTTATGTGTAGT-GATCTGAGTTTTCTCACCCAAGG  98
      |||   ||| |||||||||||||||| |||||||||||||||||||||||
seq2  GTT---CCCCTTCATTTATGTGTAGTGGATCTGAGTTTTCTCACCCAAGG  95

seq1  GGAAAGGAGAATTATGGGATGATCAAAGG-TTCACTAAGCTATAAATCAC  147
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAAAGGAGAATTATGGGATGATCAAAGGTTTCACTAAGCTATAAATCAC  145

seq1  ATTAGAAACAAAG-TTAAAACTGAGCAAGTTTGCCTGTCTAACTTTCTTT  196
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAACAAAGTTTAAAACTGAGCAAGTTTGCCTGTCTAACTTTCTTT  195

seq1  AGACTTACTGGGGTGCTAAGACAAATTCTCCTTATGTAGCTGACATATTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTACTGGGGTGCTAAGACAAATTCTCCTTATGTAGCTGACATATTT  245

seq1  AATAGCCCTACTGTGTGAACCTTTGCTCATGCTAATCTTTCTCCTACAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCCTACTGTGTGAACCTTTGCTCATGCTAATCTTTCTCCTACAGA  295

seq1  CCAATGTCTTTCTCCTTGGTCTCAGGAAATGGTGCAGCATTGACTTGAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTCTTTCTCCTTGGTCTCAGGAAATGGTGCAGCATTGACTTGAGA  345

seq1  AGTTGAACACTCGCAACCCAGAAGTCATGGCATCTTGACTTCATGAGCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAACACTCGCAACCCAGAAGTCATGGCATCTTGACTTCATGAGCTT  395

seq1  GGAGAAAATAGGATCAGTCTAGTGCAATCCCTTCTTGCATCTTCCCTGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAATAGGATCAGTCTAGTGCAATCCCTTCTTGCATCTTCCCTGTG  445

seq1  GGACTTGCTTCTCCCAACAAGAAGTCTGGTCTTGCTGACTTCCCCATATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGCTTCTCCCAACAAGAAGTCTGGTCTTGCTGACTTCCCCATATG  495

seq1  ACTTTTGCATCATTTCCTTGTGCAGATACCATGGAGGAAGCAGATGAGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGCATCATTTCCTTGTGCAGATACCATGGAGGAAGCAGATGAGAG  545

seq1  GGGCTGAGAGGAGCTCGCTATGGCAGAATGCACTTGTGCTTTGTGGTTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGAGGAGCTCGCTATGGCAGAATGCACTTGTGCTTTGTGGTTAT  595

seq1  GTGATCTCTATAGTAAGGAAAAGCTGACTGGTTTTCTCAAACAATGCCCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTCTATAGTAAGGAAAAGCTGACTGGTTTTCTCAAACAATGCCCC  645

seq1  ACAAGACCCTAGGCAATGATGCCCTAATGGAATTCCTTCTCAGTGAGGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACCCTAGGCAATGATGCCCTAATGGAATTCCTTCTCAGTGAGGTT  695

seq1  TCCTTGATTGAACAGCCAAGTGATACCTATTCCATTTTCTGCCCTAAGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATTGAACAGCCAAGTGATACCTATTCCATTTTCTGCCCTAAGGA  745

seq1  ATCTGATATTATACATTCCCTGCTCACATGTCTCTGTGGGTTTCCAGATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATATTATACATTCCCTGCTCACATGTCTCTGTGGGTTTCCAGATC  795

seq1  CCTTGATCTGGATCTAACGAGAGGGTTTTAGATAACCAGTCTCCAGTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATCTGGATCTAACGAGAGGGTTTTAGATAACCAGTCTCCAGTTTT  845

seq1  ATACCCATAGATATCCCCAAAAAAGCCATATGTGCCTTTGTCCCTGGGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCATAGATATCCCCAAAAAAGCCATATGTGCCTTTGTCCCTGGGAG  895

seq1  TAACAGAACTGTCTGAACATTTCTGTAGGCCTTGTCTCTTCACCAGTGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAACTGTCTGAACATTTCTGTAGGCCTTGTCTCTTCACCAGTGTA  945

seq1  TCCAGAGAAACTCAGACAGCCATAGCTGCCTCTGCCTTCCTAAGTTGAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAAACTCAGACAGCCATAGCTGCCTCTGCCTTCCTAAGTTGAGA  995

seq1  ACTAAACAGCAGTCACTGTCCAACCAATCATCAGTACACAGAATTTCAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAGCAGTCACTGTCCAACCAATCATCAGTACACAGAATTTCAAC  1045

seq1  ATTGAATCAAAGGACAACTCTAGTGATAATTTTAAAGTTTTGGTTTCTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATCAAAGGACAACTCTAGTGATAATTTTAAAGTTTTGGTTTCTTT  1095

seq1  GAAAAACACAGAAATATTATAAACTATGTTTTCTTTTGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACACAGAAATATTATAAACTATGTTTTCTTTTGAATTC  1138


seq1: chr9_23399123_23399744
seq2: B6Ng01-215C03.g_64_685

seq1  GAATTCATAAAACTGCCATTTTATAAAAAATACCCATGTAGCTACTAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAACTGCCATTTTATAAAAAATACCCATGTAGCTACTAAGC  50

seq1  ATGGTGACCTACACTTGAAATTCCAGCATTCAAGGGGCTGAGGCAGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGACCTACACTTGAAATTCCAGCATTCAAGGGGCTGAGGCAGGACT  100

seq1  GTCACAAGGCTGGATTCAGATGAGATCAGGTCTCAAATAAATAAATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAGGCTGGATTCAGATGAGATCAGGTCTCAAATAAATAAATAAAT  150

seq1  AAATAAATAAATAAAATAACCCAAGAATGAGGAAGTGAGGCATGGAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAAATAACCCAAGAATGAGGAAGTGAGGCATGGAAGTT  200

seq1  TCTGGAAAGTTCTCTTTTCTGTTTCATTTGTAAGAATAGTTTGACAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAGTTCTCTTTTCTGTTTCATTTGTAAGAATAGTTTGACAATAG  250

seq1  ATTGCTTAGGTTTTTTGTTGAATAAAAAAATCTTTTCTTCTGTATGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTAGGTTTTTTGTTGAATAAAAAAATCTTTTCTTCTGTATGTAAA  300

seq1  CCTGTTATTCTCTTGTCTGTGGTATCTGCTTTTCCTGTAAAACGTATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTATTCTCTTGTCTGTGGTATCTGCTTTTCCTGTAAAACGTATCTC  350

seq1  ACCACAGCTGTGATTGCCTGGACAAGATCAAGCACATTACACAAGCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCTGTGATTGCCTGGACAAGATCAAGCACATTACACAAGCACAT  400

seq1  TACAGCATAGACAGAGGAGGGCCTCATGAGCTCATTACTAACTGAGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCATAGACAGAGGAGGGCCTCATGAGCTCATTACTAACTGAGGAGC  450

seq1  TGTGGATAGTTGGTAGCTTCTAGGAGAGAGAGAACTAGTTCTTTAACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATAGTTGGTAGCTTCTAGGAGAGAGAGAACTAGTTCTTTAACAGT  500

seq1  GCAGTCTGGAGCAGGTCCTGTGGAGACCTATGAGTACATGGGCAGCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTGGAGCAGGTCCTGTGGAGACCTATGAGTACATGGGCAGCACAA  550

seq1  ACTGGATTTGATAGTCATAAAAACAAAAAATGAGGGACATGAAGTTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTTGATAGTCATAAAAACAAAAAATGAGGGACATGAAGTTGGGA  600

seq1  GGGGGTGTAGAGATGGGGAGTA  622
      ||||||||||||||||||||||
seq2  GGGGGTGTAGAGATGGGGAGTA  622


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