BAC Information

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BAC

Clone NameB6Ng01-215D19
Chromosome9 (Build37)
Map Location 54,915,135 - 54,916,236
singlet/doubletsinglet
Overlap genenone
Upstream geneTnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554
Downstream geneLOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215D19.bB6Ng01-215D19.g
ACCGA032267GA032268
length1,0931,180
definitionB6Ng01-215D19.b B6Ng01-215D19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcccaccttctgggccctaacccccagaagccctgctccaggct
cccttggttgcttccgtgtctgggtttctctgccttcctgcctgtctcct
tcacttcgggctccctctccctcctctcctttttctaagctgcctgtcaa
aatttctttctgtcccactttgcctagtgttcctccattcccctctgccg
tttgtttatatctctacctgtcctctgtcaccgttctgaggatctgtgtc
ctgcacactgtgcccatggtctgtttgtcagcctctctcacctcatttcc
tgacttttttccccccctaacagactctgacaggctgcagaaatgtgagt
gcctgtggtgcagggtcacccacacccacttctctatcgagctgacaccc
acacggagatggattttcttagcactaacactactcgacactggttgtct
agattgtcaatgtgctgccgacagaggccaggtgccaggcacagagctcc
ctgagctggaccacaaagagagcccagtataccacagggcagtgccctag
gagccagagtcatggctcttcaggcttacggctccaaccttccaagtctt
gtttctgggaagccagattgaattagctgctgaacccatctgggcagctc
ttggcctaataccttttggcagctcatgcctcaatgccaaccccagcccc
ctggcctcagggccagaaatccaattttccagagcttaattgagccctgg
actccctagggcattggcccttaggccctcctgttcagccagcagcagat
ttcctggtgattagcagaggagggagaaaacggcaggagccaagttaatt
tcaattaccctcattttctccctggagcagcccggctaagtgcatctttg
tgtcagctgctttagacgctgataagtattaaagtattttggagccctgg
gtgccccagacacctttcattttatctgctggttcccgagagtggactgt
gcctcccgcactgttggctctctgtttatccttattttataaaccccatg
gaagcaggctaggatgttgatcagtggcctagtgcggttgggt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacttcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacgctcctccattgttggtg
ggattgcaggctcgtacaaccactctggaaatcagtctggcgattcctca
gaaaattgaacatagtactaccggaggatccagcaatacctctcctgggc
atatatcctgaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagtgacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggcttcca
atggaggagctagagaaagtagccaggagctaaagggatctgcaacccta
tagtggaacacattatgaactaacagtaccccggagctctgactctagct
gcatatgtatcaaagatgggctagtcgcatcactggaagaagagccatga
ccacaacctttattgcccagtacagcaagcaccaacggtaatggctggct
aggtgcaatcttcacgacatctgcacgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54915135_54916236
seq2: B6Ng01-215D19.b_45_1137 (reverse)

seq1  ACCCAACCCCCACCCCACCCCCACTAGG-CACTGATC-ACATCCTAGCCT  48
                   |||| || ||||||| |||||||| ||||||||||||
seq2  ------------ACCCAACCGCACTAGGCCACTGATCAACATCCTAGCCT  38

seq1  GCTTCCATGGGGTTTATAAAATAAGGATAAACAGAGAGCCAACAGGTGGC  98
      |||||||||||||||||||||||||||||||||||||||||||| |||  
seq2  GCTTCCATGGGGTTTATAAAATAAGGATAAACAGAGAGCCAACA-GTG--  85

seq1  GGGGAGGCACAGTCCACTCTCGGGAACCAGCAGAT-AAATG-AAGGTGTC  146
       |||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  CGGGAGGCACAGTCCACTCTCGGGAACCAGCAGATAAAATGAAAGGTGTC  135

seq1  TGGGGCACCCAGGGCTCC-AAATAC-TTAATACTTATCAGCGTCTAAAGC  194
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  TGGGGCACCCAGGGCTCCAAAATACTTTAATACTTATCAGCGTCTAAAGC  185

seq1  AGCTGACACAAAGATGCACTTAGCCGGGCTGCTCCAGGGAGAAAATGAGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACACAAAGATGCACTTAGCCGGGCTGCTCCAGGGAGAAAATGAGG  235

seq1  GTAATTGAAATTAACTTGGCTCCTGCCGTTTTCTCCCTCCTCTGCTAATC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAAATTAACTTGGCTCCTGCCGTTTTCTCCCTCCTCTGCTAATC  285

seq1  ACCAGGAAATCTGCTGCTGGCTGAACAGGAGGGCCTAAGGGCCAATGCCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAATCTGCTGCTGGCTGAACAGGAGGGCCTAAGGGCCAATGCCC  335

seq1  TAGGGAGTCCAGGGCTCAATTAAGCTCTGGAAAATTGGATTTCTGGCCCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGTCCAGGGCTCAATTAAGCTCTGGAAAATTGGATTTCTGGCCCT  385

seq1  GAGGCCAGGGGGCTGGGGTTGGCATTGAGGCATGAGCTGCCAAAAGGTAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGGGGGCTGGGGTTGGCATTGAGGCATGAGCTGCCAAAAGGTAT  435

seq1  TAGGCCAAGAGCTGCCCAGATGGGTTCAGCAGCTAATTCAATCTGGCTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCAAGAGCTGCCCAGATGGGTTCAGCAGCTAATTCAATCTGGCTTC  485

seq1  CCAGAAACAAGACTTGGAAGGTTGGAGCCGTAAGCCTGAAGAGCCATGAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACAAGACTTGGAAGGTTGGAGCCGTAAGCCTGAAGAGCCATGAC  535

seq1  TCTGGCTCCTAGGGCACTGCCCTGTGGTATACTGGGCTCTCTTTGTGGTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCCTAGGGCACTGCCCTGTGGTATACTGGGCTCTCTTTGTGGTC  585

seq1  CAGCTCAGGGAGCTCTGTGCCTGGCACCTGGCCTCTGTCGGCAGCACATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGGGAGCTCTGTGCCTGGCACCTGGCCTCTGTCGGCAGCACATT  635

seq1  GACAATCTAGACAACCAGTGTCGAGTAGTGTTAGTGCTAAGAAAATCCAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCTAGACAACCAGTGTCGAGTAGTGTTAGTGCTAAGAAAATCCAT  685

seq1  CTCCGTGTGGGTGTCAGCTCGATAGAGAAGTGGGTGTGGGTGACCCTGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTGTGGGTGTCAGCTCGATAGAGAAGTGGGTGTGGGTGACCCTGCA  735

seq1  CCACAGGCACTCACATTTCTGCAGCCTGTCAGAGTCTGTTAGGGGGGGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCACTCACATTTCTGCAGCCTGTCAGAGTCTGTTAGGGGGGGAA  785

seq1  AAAAGTCAGGAAATGAGGTGAGAGAGGCTGACAAACAGACCATGGGCACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAGGAAATGAGGTGAGAGAGGCTGACAAACAGACCATGGGCACA  835

seq1  GTGTGCAGGACACAGATCCTCAGAACGGTGACAGAGGACAGGTAGAGATA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGGACACAGATCCTCAGAACGGTGACAGAGGACAGGTAGAGATA  885

seq1  TAAACAAACGGCAGAGGGGAATGGAGGAACACTAGGCAAAGTGGGACAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAACGGCAGAGGGGAATGGAGGAACACTAGGCAAAGTGGGACAGA  935

seq1  AAGAAATTTTGACAGGCAGCTTAGAAAAAGGAGAGGAGGGAGAGGGAGCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTTTGACAGGCAGCTTAGAAAAAGGAGAGGAGGGAGAGGGAGCC  985

seq1  CGAAGTGAAGGAGACAGGCAGGAAGGCAGAGAAACCCAGACACGGAAGCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTGAAGGAGACAGGCAGGAAGGCAGAGAAACCCAGACACGGAAGCA  1035

seq1  ACCAAGGGAGCCTGGAGCAGGGCTTCTGGGGGTTAGGGCCCAGAAGGTGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGGAGCCTGGAGCAGGGCTTCTGGGGGTTAGGGCCCAGAAGGTGG  1085

seq1  GAGAATTC  1102
      ||||||||
seq2  GAGAATTC  1093