BAC Information

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BAC

Clone NameB6Ng01-216G03
Chromosome9 (Build37)
Map Location 8,943,144 - 8,944,294
singlet/doubletsinglet
Overlap genePgr
Upstream geneYap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6
Downstream gene9030420J04Rik, Cntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216G03.bB6Ng01-216G03.g
ACCGA033087GA033088
length1,1411,191
definitionB6Ng01-216G03.b B6Ng01-216G03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcagtatttgaatacattgaaatactggtgcctttttgaaaac
cagaataaatgttttacaaactgactggaattttctaaaaaaaaaaaaaa
aaaaaaaaaacttccccaaataaaaaccccaactttctgacatattgatg
attatttcaaatataacttgaataaatataggatgcactcatggttatgc
ccagtgttttcatgagtcaaagagttacctaatattgataactgtgccat
tccagtgtcctgattaatagatcaaatgtttggacaaatattagtgtttg
cattttagggatgagatttatggaaatctagtgacttgccaactttatga
gggaaatatggagcagagaaaatgttccactcgaaggccattttcattta
ttcttttgctttctagttaaatgtttagtggtgtcatgcgctgtcttgag
taagaatccaagttcacagcatcgaataacacagagacttctttaatggg
tattttattttgatgctaaaaaccccccaaaaagttccttaaacaaaaag
gaaacttacggtaaacactggacagagaaatagcacaatgcgcagtgagc
tgagaaaatacagcaatctcagctaatacagtcagagaaacatttgcact
tgaccccactgaggtcttcctaactgcctttacgttgaaaccttcaggct
gatgactctttatgaacaagtcaagcaattcatctaatggacgactttga
acatcaggagaattaatttgaaggtgtaaaataaagtatagtgttcttgg
ggaatcttttcttaaagagctaaattgttagaatcttcctaactctacaa
catacctcctgctatgggtgccagcctattcttccaaagtgcttagaaga
gatgtgatggcccttttcttgtctgcagttacagtagtatatataataaa
taatgactctggactggccatgtctgcatatcattctgtcattttataaa
agcttgatttctagtgttcattattttacctgatcaaagctactcatttt
taattagtgtatatatttaccacagatagtataatatgcatctaatggct
cattttaaatgacgtcactataagtaatacacttccccact
gaattcctaaacctgatagacaacttcagcaaagtagctgaatataaaat
taactcaaacaaatcattggccctcctttacacaaaggataaacaggccg
agaaagaaattagggaaacaacaccattcactatagtcacaagcaatata
aaataccttggtgtaactctaagcaagtgaaagatctgtatgataagaac
ttcaagtctttgaagaaggaaatcatagaaagtctcagaagatggaaaga
tctacaatgctcatggattggcaggattaatataataaaaatggccaact
tgctgaaagcaatctactgattcaatgcaatacccatcaaaattaaaatt
cagttcttcacagagctagaaagaccaatttgcaaatttatctggaataa
caaactaggatagtgaaacctattctcaacaataaaaagaacttctggag
gaatcaccatgcctgacctcaagctgtactacagagcaattgtgaaacaa
acaaacaaacaaacaacaacaacaacaaaaccgtactgatacagtgacag
gcaggtggatcaatggaatagaattgaagatccagaaatgaaaccacaca
cctaaggtcacttgatctttggcaaaggagctaaagccatccatccagtg
gaaaaaagatcgcactttcaccggtgctgactcagctggcaattagtatg
tagaagaatgcatactgatccattctcatgtccttgtacaaagctcaaat
ccaagtggatcaaagacctccacataaatccagatacactgaaactaata
gaagagaaagtggagaaaaagcctcaagctcatgggcacaagggaaaatt
tcctgaacagaacagcaataacctatgctctaagatcaagaatggacaaa
tggaacttcataaattgcaagacttctgtaaggtgaaggacattgtcata
ggacaaaaaaggccaatagattggaaaagatctttaccaatcctacatgt
gatagtggctatatccaatatatacaaagactccaaaagttagtctcaaa
gagccaaataccctataaaaatgggtacgagctaaaaagattctcaactg
agaataaaatggctgagagctcctaaaaaaaatgtccacatctagtcatc
aggaatgccaactaacaaacctgtgaagaatattaacactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_8943144_8944294
seq2: B6Ng01-216G03.b_42_1182 (reverse)

seq1  AGTGGGGAAGTG-ATTACTATTAGTGACTGTCATTATATATGAGCCATCT  49
      |||||||||||| ||||||  ||||||| ||||||  | ||||||||  |
seq2  AGTGGGGAAGTGTATTACTTATAGTGAC-GTCATTTAAAATGAGCCA--T  47

seq1  AAGATGCATAATTATACCTTATCCTGTGGTAAATATATACACTAATTTAA  99
       |||||||| |||||||  ||| |||||||||||||||||||||| ||||
seq2  TAGATGCAT-ATTATAC--TAT-CTGTGGTAAATATATACACTAA-TTAA  92

seq1  AAATGAGTAGCTTTGATCAGGTAAAATAATGAACACTAGAAATCAAGCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTAGCTTTGATCAGGTAAAATAATGAACACTAGAAATCAAGCTT  142

seq1  TTATAAAATGACAGAATTGATATGCAGACATGGCCAGTCCAGAGTCATTA  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTATAAAATGACAGAA-TGATATGCAGACATGGCCAGTCCAGAGTCATTA  191

seq1  TTTATTATTATATACTACTGTAACTGCAGACAAGAAAAGGGCCATCACAT  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTA-TATATACTACTGTAACTGCAGACAAGAAAAGGGCCATCACAT  240

seq1  CTCTTCTAAGCACTTTTGGAAGAATAGGCTGGCACCCATAGCAGGAGGTA  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTAAGCAC-TTTGGAAGAATAGGCTGGCACCCATAGCAGGAGGTA  289

seq1  TGTTGTAGAGTTAGGAAGATTCTAACAATTTAGCTCTTTAAGAAAAGATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAGAGTTAGGAAGATTCTAACAATTTAGCTCTTTAAGAAAAGATT  339

seq1  CCCCAAGAACACTATACTTTATTTTACACCTTAAAATTAATTCTCCTGAT  399
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCCCAAGAACACTATACTTTATTTTACACCTTCAAATTAATTCTCCTGAT  389

seq1  GTTCAAAGTCGTCCATTAGATGAATTGCTTGACTTGTTCATAAAGAGTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGTCGTCCATTAGATGAATTGCTTGACTTGTTCATAAAGAGTCA  439

seq1  TCAGCCTGAAGGTTTCAACGTAAAGGCAGTTAGGAAGACCTCAGTGGGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGAAGGTTTCAACGTAAAGGCAGTTAGGAAGACCTCAGTGGGGT  489

seq1  CAAGTGCAAATGTTTCTCTGACTGTATTAGCTGAGATTGCTGTATTTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCAAATGTTTCTCTGACTGTATTAGCTGAGATTGCTGTATTTTCT  539

seq1  CAGCTCACTGCGCATTGTGCTATTTCTCTGTCCAGTGTTTACCGTAAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACTGCGCATTGTGCTATTTCTCTGTCCAGTGTTTACCGTAAGTT  589

seq1  TCCTTTTTGTTTAAGGAACTTTTTGGGGGGTTTTTAGCATCAAAATAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTGTTTAAGGAACTTTTTGGGGGGTTTTTAGCATCAAAATAAAA  639

seq1  TACCCATTAAAGAAGTCTCTGTGTTATTCGATGCTGTGAACTTGGATTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATTAAAGAAGTCTCTGTGTTATTCGATGCTGTGAACTTGGATTCT  689

seq1  TACTCAAGACAGCGCATGACACCACTAAACATTTAACTAGAAAGCAAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAGACAGCGCATGACACCACTAAACATTTAACTAGAAAGCAAAAG  739

seq1  AATAAATGAAAATGGCCTTCGAGTGGAACATTTTCTCTGCTCCATATTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGAAAATGGCCTTCGAGTGGAACATTTTCTCTGCTCCATATTTC  789

seq1  CCTCATAAAGTTGGCAAGTCACTAGATTTCCATAAATCTCATCCCTAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAAAGTTGGCAAGTCACTAGATTTCCATAAATCTCATCCCTAAAA  839

seq1  TGCAAACACTAATATTTGTCCAAACATTTGATCTATTAATCAGGACACTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACACTAATATTTGTCCAAACATTTGATCTATTAATCAGGACACTG  889

seq1  GAATGGCACAGTTATCAATATTAGGTAACTCTTTGACTCATGAAAACACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCACAGTTATCAATATTAGGTAACTCTTTGACTCATGAAAACACT  939

seq1  GGGCATAACCATGAGTGCATCCTATATTTATTCAAGTTATATTTGAAATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAACCATGAGTGCATCCTATATTTATTCAAGTTATATTTGAAATA  989

seq1  ATCATCAATATGTCAGAAAGTTGGGGTTTTTATTTGGGGAAGTTTTTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAATATGTCAGAAAGTTGGGGTTTTTATTTGGGGAAGTTTTTTTT  1039

seq1  TTTTTTTTTTTTTTTTAGAAAATTCCAGTCAGTTTGTAAAACATTTATTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTAGAAAATTCCAGTCAGTTTGTAAAACATTTATTC  1089

seq1  TGGTTTTCAAAAAGGCACCAGTATTTCAATGTATTCAAATACTGATGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCAAAAAGGCACCAGTATTTCAATGTATTCAAATACTGATGAAT  1139

seq1  TC  1151
      ||
seq2  TC  1141