BAC Information

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BAC

Clone NameB6Ng01-216M02
Chromosome9 (Build37)
Map Location 22,812,636 - 22,813,838
singlet/doubletsinglet
Overlap genenone
Upstream genePrkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
Downstream geneBmper, LOC100040866, LOC100040878, LOC100040893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216M02.bB6Ng01-216M02.g
ACCGA033361GA033362
length1,1661,187
definitionB6Ng01-216M02.b B6Ng01-216M02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgcagccagaaggaaaatccatccctttctaagcccaagtctga
aaaacgtagcgacacataagtttaatattttggttgataatatgccatgg
actcagagtattttccatttcctctatcctttccccagtgacttcaaagg
tctgtattaatgtatcagaacctgaataggagttgtaatgctaaaagtgt
tttttttttttttctttaaaaaatgcattagactcattcaaatgagtcct
gtgctccttagggtagactcttgaacaggattaggacttaactgtagcga
cccccaccccagcacacaaaggcaggctctgccaacacacatactcaggt
atttgcacaagaagtgcttttacaattcattttgcataagcacaccattg
ctagtatctttcatggtgtcatgctaaaatttgtggggaaagtcccagaa
gttgaatgccaggtctaatctgacacttttaggaaataggccggttgagc
cacgcagagtgctaggccccttcaatccctgcactcaggaggctgaggca
gggggatggtaggctgcatagttctgtctcaaaagaagagcactaacaca
ctgggctagttggagatagagcagatagctccatttaacgatgtgagtga
cagaagcttgaatttaggaatgtgctaaagcatacccatgcgcttatact
gagttttacttttagtatatcctgataaatcacacaaaacatttacattt
tttattatgtaaaagatgattttgcccaactgtgccaagcatgtgccatg
agtatttttaaggcaaaataaactaagccattaggtccgtaagatatacg
tatcacacgcattttttaaaaaggttacctactatagggatagggttatg
gtaagctgagaatatctagctgtactggagggttaaaatgagattttcct
agagcagatacttgaattttttcatggactataagtgggctctgcacaca
gaatacaccataacagacacgggttctgaacacccagctccatgctgagt
gatagcagacattgaacttggtgttctggtgacaatagccagtgatctgc
aatctagtcaaagcatcgagatactgaggatgtcctgagtccggagtcct
gaactagagtccaggg
gaattcctatgcatgtctttacatgtattgaaaaaaagtattaaatttca
tatgcaaacacaaaatgttcagggtagccaaaacaatcctgagtagtaac
actgctggtggtgtcaccatcccagattccaggttccactacagggctgc
agtaataaaaagagcatggtactggaacacaaacagacacattgattaac
accatagaatctaggatatcaggccatgctgctatggccatctgacttgt
gacagagaagctaaaagtacacattggagaaaagaccgcctcttcaacga
gtggcattggtcagactgggtgcctacatagagagggatgatgaattgaa
ccctatctctgatgctgcatgaactccactacagatcaagggcatcagtg
taaatgctgacacggtcagcctattagagcagaaggaagggaatgtgctt
caactcactgactttctgactaagggcaagatagtgcaagagctaaaacc
agcaatcaacaaatgtgaccttataaatataaaaagtttctgtacagtgc
caggcaccatcaatcaagtaaagaggtgccctatagaataggagccaata
tttaccatctgacagtgtcgctatctagagaatagaaaatactaaagaaa
ccgaaacctatgaaaacaaacagcacgcatggatctaaaaagagttccta
taagacaaaatacagatgcctgagtattattagtttttaatcttcaatat
cttaccaggaaaaggcaaattaaaaccactttgagagttcatcttactcc
agtcaaaatagctaaagtcaaaaaaacccaataatgacaagtgctggtga
ggatgtgggtaatggggaccacttacttcctgttgaagggactacaatct
aatgcccacctttgtggagggcagtatggatattcccttaataccctaga
aatagatataccataatatcccagctatatattcttgggccacatatcta
aaggactatatattttactgtcaataccctacgatagaaccagagccagc
tcttaaagtccatccacctatgaatagataatatgaatgtgtccaccttg
tacatgggaaattattccaccctgtagacgttaaacctagatgaaagact
gtcctagtgcccaggatgcgcgtttaccactccagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_22812636_22813838
seq2: B6Ng01-216M02.b_40_1205 (reverse)

seq1  CCCTGGACTCTAGTCTAGGTGACTTCTGAGGACTCTGAGGACATCCTCAC  50
      ||||||||||||||  ||  |||| |   ||||||  |||||||||||| 
seq2  CCCTGGACTCTAGTTCAG--GACTCC---GGACTC--AGGACATCCTCA-  42

seq1  AAAGTTACCTTCTGATGGCCTTTGGAACTAGATGTGGCAGATTTAATTTC  100
           || ||   ||||  |||||  ||||||  | ||||||      | 
seq2  ----GTATCT--CGATG--CTTTG--ACTAGA--TTGCAGAT---CACTG  77

seq1  GCTATTTGGTCCACAAGGAAACACAAGGTTTCAAATGTCCTGCTATTCAC  150
      ||||||  || ||| ||  ||||| | |||   ||||| |||||| ||||
seq2  GCTATT--GT-CACCAG--AACACCAAGTT--CAATGT-CTGCTA-TCAC  118

seq1  TCAGCAAGGGAAGCCTGGGTTGTTCAGAACCCCGTGTCTGTTATTGGTGT  200
      |||||| ||  || ||||| ||||||||| ||||||||||||| ||||||
seq2  TCAGCATGG--AG-CTGGG-TGTTCAGAA-CCCGTGTCTGTTA-TGGTGT  162

seq1  ATTCTGTGTGCAGAGCCCACTTATAGTCCATGAAAAAATTCAAGTATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGTGCAGAGCCCACTTATAGTCCATGAAAAAATTCAAGTATCTG  212

seq1  CTCTAGGAAAATCTCATTTTAACCCTCCAGTACAGCTAGATATTCTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGAAAATCTCATTTTAACCCTCCAGTACAGCTAGATATTCTCAGC  262

seq1  TTACCATAACCCTATCCCTATAGTAGGTAACCTTTTTAAAAAATGCGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATAACCCTATCCCTATAGTAGGTAACCTTTTTAAAAAATGCGTGT  312

seq1  GATACGTATATCTTACGGACCTAATGGCTTAGTTTATTTTGCCTTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGTATATCTTACGGACCTAATGGCTTAGTTTATTTTGCCTTAAAAA  362

seq1  TACTCATGGCACATGCTTGGCACAGTTGGGCAAAATCATCTTTTACATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGGCACATGCTTGGCACAGTTGGGCAAAATCATCTTTTACATAA  412

seq1  T-AAAAATGTAAATGTTTTGTGTGATTTATCAGGATATACTAAAAGTAAA  499
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATGTAAATGTTTTGTGTGATTTATCAGGATATACTAAAAGTAAA  462

seq1  ACTCAGTATAATCGCATGGGTATGCTTTAGCACATTCCTAAATTCAAGCT  549
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTATAAGCGCATGGGTATGCTTTAGCACATTCCTAAATTCAAGCT  512

seq1  TCTGTCACTCACATCGTTAAATGGAGCTATCTGCTCTATCTCCAACTAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACTCACATCGTTAAATGGAGCTATCTGCTCTATCTCCAACTAGC  562

seq1  CCAGTGTGTTAGTGCTCTTCTTTTGAGACAGAACTATGCAGCCTACCATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGTTAGTGCTCTTCTTTTGAGACAGAACTATGCAGCCTACCATC  612

seq1  CCCCTGCCTCAGCCTCCTGAGTGCAGGGATTGAAGGGGCCTAGCACTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCTCAGCCTCCTGAGTGCAGGGATTGAAGGGGCCTAGCACTCTG  662

seq1  CGTGGCTCAACCGGCCTATTTCCTAAAAGTGTCAGATTAGACCTGGCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTCAACCGGCCTATTTCCTAAAAGTGTCAGATTAGACCTGGCATT  712

seq1  CAACTTCTGGGACTTTCCCCACAAATTTTAGCATGACACCATGAAAGATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTGGGACTTTCCCCACAAATTTTAGCATGACACCATGAAAGATA  762

seq1  CTAGCAATGGTGTGCTTATGCAAAATGAATTGTAAAAGCACTTCTTGTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAATGGTGTGCTTATGCAAAATGAATTGTAAAAGCACTTCTTGTGC  812

seq1  AAATACCTGAGTATGTGTGTTGGCAGAGCCTGCCTTTGTGTGCTGGGGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTGAGTATGTGTGTTGGCAGAGCCTGCCTTTGTGTGCTGGGGTG  862

seq1  GGGGTCGCTACAGTTAAGTCCTAATCCTGTTCAAGAGTCTACCCTAAGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCGCTACAGTTAAGTCCTAATCCTGTTCAAGAGTCTACCCTAAGGA  912

seq1  GCACAGGACTCATTTGAATGAGTCTAATGCATTTTTTAAAGAAAAAAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGACTCATTTGAATGAGTCTAATGCATTTTTTAAAGAAAAAAAAA  962

seq1  AAAAACACTTTTAGCATTACAACTCCTATTCAGGTTCTGATACATTAATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACTTTTAGCATTACAACTCCTATTCAGGTTCTGATACATTAATA  1012

seq1  CAGACCTTTGAAGTCACTGGGGAAAGGATAGAGGAAATGGAAAATACTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTTGAAGTCACTGGGGAAAGGATAGAGGAAATGGAAAATACTCT  1062

seq1  GAGTCCATGGCATATTATCAACCAAAATATTAAACTTATGTGTCGCTACG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCATGGCATATTATCAACCAAAATATTAAACTTATGTGTCGCTACG  1112

seq1  TTTTTCAGACTTGGGCTTAGAAAGGGATGGATTTTCCTTCTGGCTGCAGA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGACTTGGGCTTAGAAAGGGATGGATTTTCCTTCTGGCTGCAGA  1162

seq1  ATTC  1203
      ||||
seq2  ATTC  1166