BAC Information

Click to search

BAC

Clone NameB6Ng01-217M23
Chromosome9 (Build37)
Map Location 91,105,741 - 91,299,007
singlet/doubletdoublet
Overlap geneLOC621576, Zic1, Zic4
Upstream geneTbc1d2b, LOC100039777, LOC100039925, EG434428
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217M23.bB6Ng01-217M23.g
ACCGA034110GA034111
length1,1261,002
definitionB6Ng01-217M23.b B6Ng01-217M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,105,741 - 91,106,883)(91,298,019 - 91,299,007)
sequence
gaattctaccaagaaatcacttctgagttaacttcagtcttgttacttat
aacattacctctttgtctttgagcctcttgtagaaaaattatctcactat
ttattataatccttattttcctagcatcataatttttggtaatcctctac
tttcatcatgtatgtcctaaatgctaaactcttttgaaagtccaatatcc
ctgtacattaaatatgcccacaatactttgcatgttaacatttctttgac
taggccaaacctgactcattgtgaataagaatttgctaatggtaaatcat
ttcagtgagtacaagaaataaggcattactctttatattttttctgtctt
tattttattttttattaagtatttttctttatttacatttcaaacgtttt
cccctttcctggtttcccctctgaaaatcccctatcccttcccccatccc
tccaacccacccactcccacttcctggccctggcattcacgtacactggg
gcatagagccctcacaggaccaaaggcctctcctcccattgatgacccac
aaggccatcctctgctatatatgcagctggagccatgagtcccaccatgt
gtactctttggttgctggattagtccctgggagctctgggagtactggtt
agctcatattgttgttcctactatggggctgcaaacaccttcgtccccat
tctacagtaagactgtgaagttgtagccattacactctgaagtgtctgca
cacttactcattaagcagcctctatcctttggagtaagttcaaacatttt
ccaaacaacttaatatgcatttacaacaagctaggaaaaaaaacaggata
agttattggaaagaattttgaaaaacaacaaacaaacaaacaaaacctct
tttcccaggtagtagaggaattttacaaaataaagtggagaagacagaaa
tagagaaatggatgagagcatcagcagtgccaagaggcctggggatgtag
tcagtatagagtggcttgacccacagcatggagccctggagaaagaggag
tgaacagattggattgccaataaatgttaaaaaatgtaaaagttaaatct
gacaatgcatttcttatacatttgga
gaattcaataaaagcaaagctgcaacggaagagattttcagctaaaatta
tacagcatggggcaaagcttagagcagccagatggccaaaagtagagggg
tcctctcagtttcaaaacccagatctagaactccctgggctgagcctctt
agtttatttaatcccatgtgtatttttaaattaaaaaaaaaagaagaaga
aagaaagaaagaaaaagaaaggaagaaaaatattccccttccctcttttt
ccccacttcattttttttttgttccccctcaggctccccatggcatatgt
actggagagacccctgccttggaatttgtagaagtcacttttccattcct
cccacgagaatagagttaaacttttgagtagccagcctgaagcaacgtta
actccacaggctataagagggttcactggaggtcggagtaaggtctggat
gtaaattcccccaacacctcacatggccaggaagctgaggcttttaaatt
taatgaatactatattcatcacacacacacacacacacacacacacacac
acaccattccctgcaaatgggactggtttacctttctgcattactctggg
ggaagcttccagttcaggactattgtctgggttcttttgtttgtgccaac
cctactacaactttctagagttagttgcagtggcaaccctgactgtggaa
tgggttgtttgaaattaacatgtattatagtctagccaagcccctccccc
tcccaggaagaaaaaaaaggcatgggatggtggttcaatgaagtggaaag
agtcagaagtttgctttggacttgaagcggaaggctagacagttcctggg
gcatttcttctagaggagggaatctccccaaaaccaagtgctaaagcacc
atccccacccccggtacatagtctgaaaagaagttaatggaagtcttaac
agttttagcttccaccttccaggggaggcctccaggaaagcatccctagc
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_91105741_91106883
seq2: B6Ng01-217M23.b_50_1175

seq1  GAATTCTACCAAGAAATCACTTCTGAGTTAACTTCAGTCTTGTTACTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCAAGAAATCACTTCTGAGTTAACTTCAGTCTTGTTACTTAT  50

seq1  AACATTACCTCTTTGTCTTTGAGCCTCTTGTAGAAAAATTATCTCACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTACCTCTTTGTCTTTGAGCCTCTTGTAGAAAAATTATCTCACTAT  100

seq1  TTATTATAATCCTTATTTTCCTAGCATCATAATTTTTGGTAATCCTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATAATCCTTATTTTCCTAGCATCATAATTTTTGGTAATCCTCTAC  150

seq1  TTTCATCATGTATGTCCTAAATGCTAAACTCTTTTGAAAGTCCAATATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCATGTATGTCCTAAATGCTAAACTCTTTTGAAAGTCCAATATCC  200

seq1  CTGTACATTAAATATGCCCACAATACTTTGCATGTTAACATTTCTTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATTAAATATGCCCACAATACTTTGCATGTTAACATTTCTTTGAC  250

seq1  TAGGCCAAACCTGACTCATTGTGAATAAGAATTTGCTAATGGTAAATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCAAACCTGACTCATTGTGAATAAGAATTTGCTAATGGTAAATCAT  300

seq1  TTCAGTGAGTACAAGAAATAAGGCATTACTCTTTATATTTTTTCTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGAGTACAAGAAATAAGGCATTACTCTTTATATTTTTTCTGTCTT  350

seq1  TATTTTATTTTTTATTAAGTATTTTTCTTTATTTACATTTCAAACGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTTTTATTAAGTATTTTTCTTTATTTACATTTCAAACGTTTT  400

seq1  CCCCTTTCCTGGTTTCCCCTCTGAAAATCCCCTATCCCTTCCCCCATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCCTGGTTTCCCCTCTGAAAATCCCCTATCCCTTCCCCCATCCC  450

seq1  TCCAACCCACCCACTCCCACTTCCTGGCCCTGGCATTCACGTACACTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCACCCACTCCCACTTCCTGGCCCTGGCATTCACGTACACTGGG  500

seq1  GCATAGAGCCCTCACAGGACCAAAGGCCTCTCCTCCCATTGATGACCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAGCCCTCACAGGACCAAAGGCCTCTCCTCCCATTGATGACCCAC  550

seq1  AAGGCCATCCTCTGCTATATATGCAGCTGGAGCCATGAGTCCCACCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATCCTCTGCTATATATGCAGCTGGAGCCATGAGTCCCACCATGT  600

seq1  GTACTCTTTGGTTGCTGGATTAGTCCCTGGGAGCTCTGGGAGTACTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTTTGGTTGCTGGATTAGTCCCTGGGAGCTCTGGGAGTACTGGTT  650

seq1  AGCTCATATTGTTGTTCCTACTATGGGGCTGCAAACACCTTCGTCCCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATATTGTTGTTCCTACTATGGGGCTGCAAACACCTTCGTCCCCAT  700

seq1  TCTACAGTAAGACTGTGAAGTTGTAGCCATTACACTCTGAAGTGTCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGTAAGACTGTGAAGTTGTAGCCATTACACTCTGAAGTGTCTGCA  750

seq1  CACTTACTCATTAAGCAGCCTCTATCCTTTGGAGTAAGTTCAAACATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTCATTAAGCAGCCTCTATCCTTTGGAGTAAGTTCAAACATTTT  800

seq1  CCAAACAACTTAATATGCATTTACAACAAGCTAGGAAAAAAAACAGGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAACTTAATATGCATTTACAACAAGCTAGGAAAAAAAACAGGATA  850

seq1  AGTTATTGGAAAGAATTTTGAAAAACAAACAAACAAACAAAACAAAACCT  900
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  AGTTATTGGAAAGAATTTTGAAAAAC-AACAAACAAAC-AAACAAAACCT  898

seq1  CTTTTCCCAGGTAGTAGAGGAATTTTACAAAAATAAAGTGGAGAAAGACA  950
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  CTTTTCCCAGGTAGTAGAGGAATTTTAC-AAAATAAAGTGGAG-AAGACA  946

seq1  GAAAATAAGAGAAAATGGATGAGAGCATCAAGCAGTGCCCAGAGGCCTGG  1000
      ||||   |||| ||||||||||||||||| ||||||||| ||||||||||
seq2  GAAA--TAGAG-AAATGGATGAGAGCATC-AGCAGTGCCAAGAGGCCTGG  992

seq1  GGATGTAGGTCAGTAATAGAGT-GCTTGACCCACAAGCATGAAGCCCTGA  1049
      ||||||| |||||| ||||||| ||||||||||| |||||| ||||||| 
seq2  GGATGTA-GTCAGT-ATAGAGTGGCTTGACCCAC-AGCATGGAGCCCTGG  1039

seq1  GAAAAGAAGAGTGAACAGGATTGAATTTTGCAAATAAATGTTAAAAAAAT  1099
        ||||| ||||||||| ||||| |  |||| |||||||||| |||||||
seq2  AGAAAGAGGAGTGAACA-GATTGGA--TTGCCAATAAATGTT-AAAAAAT  1085

seq1  GTAAAAGTTTTAAATCTGAACAAATGCATTTCTTAT-CATTTGGA  1143
      |||||||  ||||||||||   |||||||||||||| ||||||||
seq2  GTAAAAG--TTAAATCTGA--CAATGCATTTCTTATACATTTGGA  1126

seq1: chr9_91298019_91299007
seq2: B6Ng01-217M23.g_67_1067 (reverse)

seq1  GGCTA-GGATGCTTTCCTGGAAGCCT-CCCTGG-AGGTGGAAGCT-AAAC  46
      ||||| ||||||||||||||| |||| |||||| ||||||||||| ||||
seq2  GGCTAGGGATGCTTTCCTGGAGGCCTCCCCTGGAAGGTGGAAGCTAAAAC  50

seq1  TGTT-AGAC-TCCATTAACTCTTTTTCAGACTATGTACCGGGG--TGGGA  92
      |||| |||| ||||||||||  |||||||||||||||||||||   ||||
seq2  TGTTAAGACTTCCATTAACTTCTTTTCAGACTATGTACCGGGGGTGGGGA  100

seq1  TGGTGC-TTAGCACTTGG-TTTGGGGAGATT-CCTCCTCTAGAAGAAATG  139
      |||||| ||||||||||| |||||||||||| ||||||||||||||||||
seq2  TGGTGCTTTAGCACTTGGTTTTGGGGAGATTCCCTCCTCTAGAAGAAATG  150

seq1  CCCCAGG-ACTGTCTAGCCTTCCGCTTCAAGTCCAAAGCAAACTTCTGAC  188
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGAACTGTCTAGCCTTCCGCTTCAAGTCCAAAGCAAACTTCTGAC  200

seq1  TC-TTCCACTTCATTGAACCACCATCCCATGCCTTTTTTTTTCTTCCT-G  236
      || |||||||||||||||||||||||||||||| |||||||||||||| |
seq2  TCTTTCCACTTCATTGAACCACCATCCCATGCC-TTTTTTTTCTTCCTGG  249

seq1  GAGGGGGAGGGGCTTGGCTAGACTATAATACATGTTAATTTCAAACAACC  286
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAGGGGGAGGGGCTTGGCTAGACTATAATACATGTTAATTTCAAACAA-C  298

seq1  CCATTCCACAGTCAGGGTTGCCACTGCAACTAACTCTAGAAAGTTGTAGT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCACAGTCAGGGTTGCCACTGCAACTAACTCTAGAAAGTTGTAGT  348

seq1  AGGGTTGGCACAAACAAAAGAACCCAGACAATAGTCCTGAACTGGAAGCT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGGCACAAACAAAAGAACCCAGACAATAGTCCTGAACTGGAAGCT  398

seq1  TCCCCCAGAGTAATGCAGAAAGGTAAACCAGTCCCATTTGCAGGGAATGG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGAGTAATGCAGAAAGGTAAACCAGTCCCATTTGCAGGGAATGG  448

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGAATATAGTATTCA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGAATATAGTATTCA  498

seq1  TTAAATTTAAAAGCCTCAGCTTCCTGGCCATGTGAGGTGTTGGGGGAATT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTAAAAGCCTCAGCTTCCTGGCCATGTGAGGTGTTGGGGGAATT  548

seq1  TACATCCAGACCTTACTCCGACCTCCAGTGAACCCTCTTATAGCCTGTGG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCAGACCTTACTCCGACCTCCAGTGAACCCTCTTATAGCCTGTGG  598

seq1  AGTTAACGTTGCTTCAGGCTGGCTACTCAAAAGTTTAACTCTATTCTCGT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACGTTGCTTCAGGCTGGCTACTCAAAAGTTTAACTCTATTCTCGT  648

seq1  GGGAGGAATGGAAAAGTGACTTCTACAAATTCCAAGGCAGGGGTCTCTCC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAATGGAAAAGTGACTTCTACAAATTCCAAGGCAGGGGTCTCTCC  698

seq1  AGTACATATGCCATGGGGAGCCTGAGGGGGAACAAAAAAAAAATGAAGTG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATATGCCATGGGGAGCCTGAGGGGGAACAAAAAAAAAATGAAGTG  748

seq1  GGGAAAAAGAGGGAAGGGGAATATTTTTCTTCCTTTCTTTTTCTTTCTTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAGAGGGAAGGGGAATATTTTTCTTCCTTTCTTTTTCTTTCTTT  798

seq1  CTTTCTTCTTCTTTTTTTTTTAATTTAAAAATACACATGGGATTAAATAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTCTTTTTTTTTTAATTTAAAAATACACATGGGATTAAATAA  848

seq1  ACTAAGAGGCTCAGCCCAGGGAGTTCTAGATCTGGGTTTTGAAACTGAGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGGCTCAGCCCAGGGAGTTCTAGATCTGGGTTTTGAAACTGAGA  898

seq1  GGACCCCTCTACTTTTGGCCATCTGGCTGCTCTAAGCTTTGCCCCATGCT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCTCTACTTTTGGCCATCTGGCTGCTCTAAGCTTTGCCCCATGCT  948

seq1  GTATAATTTTAGCTGAAAATCTCTTCCGTTGCAGCTTTGCTTTTATTGAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATTTTAGCTGAAAATCTCTTCCGTTGCAGCTTTGCTTTTATTGAA  998

seq1  TTC  989
      |||
seq2  TTC  1001