BAC Information

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BAC

Clone NameB6Ng01-217P03
Chromosome9 (Build37)
Map Location 69,058,079 - 69,162,723
singlet/doubletdoublet
Overlap geneRora
Upstream gene9530091C08Rik
Downstream geneNarg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217P03.bB6Ng01-217P03.g
ACCGA034205GA034206
length1,174358
definitionB6Ng01-217P03.b B6Ng01-217P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,161,520 - 69,162,723)(69,058,079 - 69,058,436)
sequence
gaattcctttcactttcctggtaatagaagttgatcttgaatctaagtat
cgctgttatgctatcaaacccttagcatggcttctttgagaggcaaggac
aggcagctgttgaatgacagagatgaagagggtaaaagttggctgtggag
ttttgatatatttcatgtggatttcgtttccgatgcttttgcgtcaaaca
aacaaaaaatttcaagactctggcacttcctgggtgtaaaatcaatagtg
gatgacatactttacaagaggcattttctgtggttagtgtcttttcacac
ctttcttctggcacttagaatctaatcatttctctgcggtaggagacatc
agctataggaaactggttgaactcaaccaatcaatgcaagtgacttgctc
atcttgctctcctcctcaggaaaaaaaaaataacagagggctgttcattt
taggttcaagtcctctgacccgatgcttagttcatgctcactatggctaa
gctgaagacagcagtggtcgtggtccttctaatgaccgtggggtggtagt
ctagtgaaaagaagacaccagcaaacaaacagaacaataggtgtcctcat
tcaccaagccatgtaagtaaatgaaacagcagtcatttcccccaaacagg
gatcagtttacaggaataacagctcaaagggtgagctggcttgaacaggg
ggaagatgaacaatatagggacgcggggatggggacaaggaaggttttga
gtaagttaaacctcctgactgacaaagaacctacagttgcagagccaggc
ggctgaagcatccttttattcagaactcaaaggaagctattcaagcccaa
tatggtttgatttagcagatattaactgcagctaaagacatgcaaataga
atgcgtcagtcaagggagagcgagataaacaggagaaacctacactggct
agaaaggagaagagacagagattgacatttaaagagcagatgaaagatat
gacacccagaggaaggtagatgtgtactgagacacagaggagggagagac
acgagggacgaaccagaggtgtcccctcgaacccctggctctacgaggaa
acggtggtctgaactgcaggtcacgctaccggacagcaatctgataatct
ggttagtgctcaatgcacacacaa

ttttgtgaatatcctttaagtatcatgcatagctgccttccctggttctg
tttataactttttcttgaaccaagaaaacaagaggaaccaaattatcccc
tgcaggatcaattccttgagtggaaaccttgcttataaatgagagaatga
gacgtgacccaataaaagaatctattttaattttaatttatttcctggtg
gccttttatgcctccttaggcgatgacctaaccaattctttcttaacact
gattttttttttctttccaaggtcaaaaagcactttgtagttattgtaag
aagagaataaatgggtttttttttgttgttgttgtttgtttttggttttt
tgggtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_69161520_69162723
seq2: B6Ng01-217P03.b_47_1220 (reverse)

seq1  TTGTGTGTGCATTGAGCCACCTAACAAGTATTTATTAAGAAATGCCTGTG  50
      |||||||||||||||||   ||||| ||     ||||  | ||  |||| 
seq2  TTGTGTGTGCATTGAGC--ACTAACCAG-----ATTATCAGATTGCTGT-  42

seq1  TCGTGTTTGCGTGACCTGCAGCTCAGGAACAACTGTCTCCTCTGTAAGAG  100
          | | ||||||||||||| ||||  || || || ||||| || ||| 
seq2  --CCGGTAGCGTGACCTGCAGTTCAG--ACCACCGTTTCCTC-GT-AGA-  85

seq1  GCCAGGGGGTGCGAGGGGACACCTCTGGGTCTGTCCCCTTCGTGTCTCTT  150
      |||| ||||| ||||||||||||||||| || |||||  |||||||||| 
seq2  GCCA-GGGGTTCGAGGGGACACCTCTGGTTC-GTCCC--TCGTGTCTCT-  130

seq1  CCCCTCCCTTCTGTGTCTCAGGTACACATCTTCCCTTTCTCTGGGTTGTC  200
       ||||||  ||||||||||| ||||||||| | |||| ||||||| ||||
seq2  -CCCTCC--TCTGTGTCTCA-GTACACATC-TACCTTCCTCTGGG-TGTC  174

seq1  ATATCCTTTTCATCTGCTCTTTAAATGTCAATCTCTGTTCTCTTCTCCTT  250
      |||||  |||||||||||||||||||||||||||||| ||||||||||||
seq2  ATATC--TTTCATCTGCTCTTTAAATGTCAATCTCTG-TCTCTTCTCCTT  221

seq1  TCTTAGCCAGTGTAGGTTTCTCCTGTTTATCTCGCTCTCCCTTGACTGAC  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TAGCCAGTGTAGGTTTCTCCTGTTTATCTCGCTCTCCCTTGACTGAC  270

seq1  GCATTCTATTTGCATGTCTTTAGCTGCAGTTAATATCTGCTAAATCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTATTTGCATGTCTTTAGCTGCAGTTAATATCTGCTAAATCAAAC  320

seq1  CATATTGGGCTTGAATAGCTTCCTTTGAGTTCTGAATAAAAGGATGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGGGCTTGAATAGCTTCCTTTGAGTTCTGAATAAAAGGATGCTTC  370

seq1  AGCCGCCTGGCTCTGCAACTGTAGGTTCTTTGTCAGTCAGGAGGTTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCCTGGCTCTGCAACTGTAGGTTCTTTGTCAGTCAGGAGGTTTAAC  420

seq1  TTACTCAAAACCTTCCTTGTCCCCATCCCCGCGTCCCTATATTGTTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAAAACCTTCCTTGTCCCCATCCCCGCGTCCCTATATTGTTCATC  470

seq1  TTCCCCCTGTTCAAGCCAGCTCACCCTTTGAGCTGTTATTCCTGTAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTGTTCAAGCCAGCTCACCCTTTGAGCTGTTATTCCTGTAAACT  520

seq1  GATCCCTGTTTGGGGGAAATGACTGCTGTTTCATTTACTTACATGGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTGTTTGGGGGAAATGACTGCTGTTTCATTTACTTACATGGCTTG  570

seq1  GTGAATGAGGACACCTATTGTTCTGTTTGTTTGCTGGTGTCTTCTTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGAGGACACCTATTGTTCTGTTTGTTTGCTGGTGTCTTCTTTTCA  620

seq1  CTAGACTACCACCCCACGGTCATTAGAAGGACCACGACCACTGCTGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTACCACCCCACGGTCATTAGAAGGACCACGACCACTGCTGTCTT  670

seq1  CAGCTTAGCCATAGTGAGCATGAACTAAGCATCGGGTCAGAGGACTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAGCCATAGTGAGCATGAACTAAGCATCGGGTCAGAGGACTTGAA  720

seq1  CCTAAAATGAACAGCCCTCTGTTATTTTTTTTTTCCTGAGGAGGAGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATGAACAGCCCTCTGTTATTTTTTTTTTCCTGAGGAGGAGAGCA  770

seq1  AGATGAGCAAGTCACTTGCATTGATTGGTTGAGTTCAACCAGTTTCCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGCAAGTCACTTGCATTGATTGGTTGAGTTCAACCAGTTTCCTAT  820

seq1  AGCTGATGTCTCCTACCGCAGAGAAATGATTAGATTCTAAGTGCCAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGTCTCCTACCGCAGAGAAATGATTAGATTCTAAGTGCCAGAAG  870

seq1  AAAGGTGTGAAAAGACACTAACCACAGAAAATGCCTCTTGTAAAGTATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGAAAAGACACTAACCACAGAAAATGCCTCTTGTAAAGTATGT  920

seq1  CATCCACTATTGATTTTACACCCAGGAAGTGCCAGAGTCTTGAAATTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTATTGATTTTACACCCAGGAAGTGCCAGAGTCTTGAAATTTTT  970

seq1  TGTTTGTTTGACGCAAAAGCATCGGAAACGAAATCCACATGAAATATATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGACGCAAAAGCATCGGAAACGAAATCCACATGAAATATATC  1020

seq1  AAAACTCCACAGCCAACTTTTACCCTCTTCATCTCTGTCATTCAACAGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCACAGCCAACTTTTACCCTCTTCATCTCTGTCATTCAACAGCT  1070

seq1  GCCTGTCCTTGCCTCTCAAAGAAGCCATGCTAAGGGTTTGATAGCATAAC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCCTTGCCTCTCAAAGAAGCCATGCTAAGGGTTTGATAGCATAAC  1120

seq1  AGCGATACTTAGATTCAAGATCAACTTCTATTACCAGGAAAGTGAAAGGA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATACTTAGATTCAAGATCAACTTCTATTACCAGGAAAGTGAAAGGA  1170

seq1  ATTC  1204
      ||||
seq2  ATTC  1174


seq1: chr9_69058079_69058436
seq2: B6Ng01-217P03.g_72_429

seq1  TTTTGTGAATATCCTTTAAGTATCATGCATAGCTGCCTTCCCTGGTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGAATATCCTTTAAGTATCATGCATAGCTGCCTTCCCTGGTTCTG  50

seq1  TTTATAACTTTTTCTTGAACCAAGAAAACAAGAGGAACCAAATTATCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACTTTTTCTTGAACCAAGAAAACAAGAGGAACCAAATTATCCCC  100

seq1  TGCAGGATCAATTCCTTGAGTGGAAACCTTGCTTATAAATGAGAGAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATCAATTCCTTGAGTGGAAACCTTGCTTATAAATGAGAGAATGA  150

seq1  GACGTGACCCAATAAAAGAATCTATTTTAATTTTAATTTATTTCCTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGACCCAATAAAAGAATCTATTTTAATTTTAATTTATTTCCTGGTG  200

seq1  GCCTTTTATGCCTCCTTAGGCGATGACCTAACCAATTCTTTCTTAACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTATGCCTCCTTAGGCGATGACCTAACCAATTCTTTCTTAACACT  250

seq1  GATTTTTTTTTTCTTTCCAAGGTCAAAAAGCACTTTGTAGTTATTGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTTCTTTCCAAGGTCAAAAAGCACTTTGTAGTTATTGTAAG  300

seq1  AAGAGAATAAATGGGTTTTTTTTTGTTGTTGTTGTTTGTTTTTGGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATAAATGGGTTTTTTTTTGTTGTTGTTGTTTGTTTTTGGTTTTT  350

seq1  TGGGTTTT  358
      ||||||||
seq2  TGGGTTTT  358


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