BAC Information

Click to search

BAC

Clone NameB6Ng01-218I04
Chromosome9 (Build37)
Map Location 82,625,153 - 82,626,238
singlet/doubletsinglet
Overlap genenone
Upstream gene4930486G11Rik, LOC100039085
Downstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218I04.bB6Ng01-218I04.g
ACCGA034620GA034621
length1,2051,088
definitionB6Ng01-218I04.b B6Ng01-218I04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttgtagctctgagccccatttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatataaggatattagtcc
ccctatctgatttaggacaggtaaagatcctttcccaatctgttggtggc
cttttagtcttattgactgtgtcttttgctttgcagaagctttgcagttt
catgaggtctcatttgtcaattctcgatcttaccgcacaagccattgatg
ttctattcaggaatttttcccctgtgcccatatcttggaggctttttcct
ataagttttctcctcaataagttttagtgtctctggttttatgtggagtt
ccttaatccacttatatttgaccttagtacaaggagagaggaatggatca
attcgcattcttctacatgataaccaccagttgtgccagcaccatttgtt
gaagatgctgacttttttccactggatggtttttgctccattgtcaaaga
tcaagtgaccataggtgtttgggttcatttctgggtcttcaattctattc
cattggtctacttgtctgttgttataccagtaccatgcagtttttatcac
aattgctctgtagtacagttttaggtcacgcatggtgattccaccagagg
ttcttttatccttgagaagagtttttgctatcctaggttttttgttattc
cagatgaatctgccgattccctttctaattcgttgaagaattgaattgga
attttgatggggattgcattgaatctgtagattgcttttggcaagatagc
catttttactatattgatcctgccaatccatgagcatgggagatctttcc
atctttctgagatcttctataatttctttcttcagagacttgaagttctt
atcatacagatctttcactttccttagttagagtcacgcctaggtatttt
aatattatttgtgactattgagaagggtgttggtttccctaatttccttt
ctcagcctgtttatttctttggtgtagaagaaaggccattgacttgtttg
agtttaattttatatccagcctacttgaatgaagccgttatcagggctta
ggaattctcctgggtgaaatttttacgaatcaccttactatgactctacc
actacatgcctgcgaagagtgaaatacttgacctcctcctcttttcccaa
atgag
gaattctttagggctgaacatagattctaggatgtgggttataagagctt
ttaaggtccgtgaataaggaagcaacagttcatcttcagaatgatcaagg
gctgaaataaaattgtgagacactagcagatttatggctccgatcaaatc
catgagtttagcatctctagttagggaagcctcagtcgtctcctaatgca
tcacaaagttggggtcggagccttacagttgggcctatgacttagtgacc
aagcagcctggttctttcattgccttatgtttcaaggacggagaaaagca
gcattgtggttatcctgctttttcccagaaggccacatttttagtttcat
aaacactggccatgcctgagctccaaagagattttaaggaggttaatggt
ttttctgggaggccaatcagtaggtatttattattcttgaattaactctt
tttaaaatttttcaaatataaggaaatagactttggccatctgaaaaata
aagatcaactccagagaaaggataaaatatgagtgtccagaatttactgg
aaaccttaaaagaaggaataaataaaaactctccttcctctcagccacta
ttttttttcaaacacccttaagtgagtcccaaatattcacaggctataga
cttggcttgagaaaaaaaccaaaagatttagtttggatgtattatctgtt
cagtgatggaattctctctgtatatttttccttgtctgtcttccttgcct
aatttactactacttatccttatttctcttttcctcctttcaatcttctc
tctttccctccctttgtatttttgtgtcttgctttcctatcaatgttaaa
gactaatgacaggaaattagttaattgcaaacatctgcttgcagaatgtg
tttaccattaaattttggaaacatattagcactacacttttgtttacgct
gagcttacctgtctctatcattcctattgttccactctttttgaaagtat
tcttccattgattttttttttttaagaggagaatatacagagggttagaa
atttgacagaggtggtgtagcagtgagaacagagaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82625153_82626238
seq2: B6Ng01-218I04.g_63_1150 (reverse)

seq1  AGTTCTCTGTCCTTCACTGCTACA-CACCTCTGTTCAATTTCCTAACCCT  49
      |||||||||| | ||||||||||| |||||||| |||| || ||||||||
seq2  AGTTCTCTGTTC-TCACTGCTACACCACCTCTG-TCAAATTTCTAACCCT  48

seq1  CTGTATA-TCTCCTCTTTAAAAAAAAAAATCAATGGAAGAATACTTTC-A  97
      ||||||| ||||||||| |||||||||||||||||||||||||||||| |
seq2  CTGTATATTCTCCTCTTAAAAAAAAAAAATCAATGGAAGAATACTTTCAA  98

seq1  AAAGAGTGGAACAATAGGAATGATAGAGACAGGTAAGCTCAGCGTAAACA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTGGAACAATAGGAATGATAGAGACAGGTAAGCTCAGCGTAAACA  148

seq1  AAAGTGTAGTGCTAATATGTTTCCAAAATTTAATGGT-AACACATTCTGC  196
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAGTGTAGTGCTAATATGTTTCCAAAATTTAATGGTAAACACATTCTGC  198

seq1  AAGCAGATGTTTGCAATTAACTAATTTCCTGTCATTAGTCTTTAACATTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATGTTTGCAATTAACTAATTTCCTGTCATTAGTCTTTAACATTG  248

seq1  ATAGGAAAGCAAGACACAAAAATACAAAGGGAGGGAAAGAGAGAAGATTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAGCAAGACACAAAAATACAAAGGGAGGGAAAGAGAGAAGATTG  298

seq1  AAAGGAGGAAAAGAGAAATAAGGATAAGTAGTAGTAAATTAGGCAAGGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGGAAAAGAGAAATAAGGATAAGTAGTAGTAAATTAGGCAAGGAA  348

seq1  GACAGACAAGGAAAAATATACAGAGAGAATTCCATCACTGAACAGATAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAAGGAAAAATATACAGAGAGAATTCCATCACTGAACAGATAAT  398

seq1  ACATCCAAACTAAATCTTTTGGTTTTTTTCTCAAGCCAAGTCTATAGCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAAACTAAATCTTTTGGTTTTTTTCTCAAGCCAAGTCTATAGCCT  448

seq1  GTGAATATTTGGGACTCACTTAAGGGTGTTTGAAAAAAAATAGTGGCTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATTTGGGACTCACTTAAGGGTGTTTGAAAAAAAATAGTGGCTGA  498

seq1  GAGGAAGGAGAGTTTTTATTTATTCCTTCTTTTAAGGTTTCCAGTAAATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGAGAGTTTTTATTTATTCCTTCTTTTAAGGTTTCCAGTAAATT  548

seq1  CTGGACACTCATATTTTATCCTTTCTCTGGAGTTGATCTTTATTTTTCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACACTCATATTTTATCCTTTCTCTGGAGTTGATCTTTATTTTTCAG  598

seq1  ATGGCCAAAGTCTATTTCCTTATATTTGAAAAATTTTAAAAAGAGTTAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAAAGTCTATTTCCTTATATTTGAAAAATTTTAAAAAGAGTTAAT  648

seq1  TCAAGAATAATAAATACCTACTGATTGGCCTCCCAGAAAAACCATTAACC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATAATAAATACCTACTGATTGGCCTCCCAGAAAAACCATTAACC  698

seq1  TCCTTAAAATCTCTTTGGAGCTCAGGCATGGCCAGTGTTTATGAAACTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAAATCTCTTTGGAGCTCAGGCATGGCCAGTGTTTATGAAACTAA  748

seq1  AAATGTGGCCTTCTGGGAAAAAGCAGGATAACCACAATGCTGCTTTTCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGCCTTCTGGGAAAAAGCAGGATAACCACAATGCTGCTTTTCTC  798

seq1  CGTCCTTGAAACATAAGGCAATGAAAGAACCAGGCTGCTTGGTCACTAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTTGAAACATAAGGCAATGAAAGAACCAGGCTGCTTGGTCACTAAG  848

seq1  TCATAGGCCCAACTGTAAGGCTCCGACCCCAACTTTGTGATGCATTAGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGCCCAACTGTAAGGCTCCGACCCCAACTTTGTGATGCATTAGGA  898

seq1  GACGACTGAGGCTTCCCTAACTAGAGATGCTAAACTCATGGATTTGATCG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACTGAGGCTTCCCTAACTAGAGATGCTAAACTCATGGATTTGATCG  948

seq1  GAGCCATAAATCTGCTAGTGTCTCACAATTTTATTTCAGCCCTTGATCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATAAATCTGCTAGTGTCTCACAATTTTATTTCAGCCCTTGATCAT  998

seq1  TCTGAAGATGAACTGTTGCTTCCTTATTCACGGACCTTAAAAGCTCTTAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGATGAACTGTTGCTTCCTTATTCACGGACCTTAAAAGCTCTTAT  1048

seq1  AACCCACATCCTAGAATCTATGTTCAGCCCTAAAGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACATCCTAGAATCTATGTTCAGCCCTAAAGAATTC  1088