BAC Information

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BAC

Clone NameB6Ng01-219L06
Chromosome9 (Build37)
Map Location 90,986,192 - 90,987,305
singlet/doubletsinglet
Overlap genenone
Upstream geneMorf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219L06.bB6Ng01-219L06.g
ACCGA035464GA035465
length1,1501,105
definitionB6Ng01-219L06.b B6Ng01-219L06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatgtattggctattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagcataagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
attcttctacatgataaccgtcagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagccactttgtcaaatatcaagt
gaccataggtgtatggattcatctctgggtcttcaattctgttttattcg
tttacttgtctgtcactataccagtaccatgcagttttgatcacaattgc
tctgtagtacagttttaggtctggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatctgctgattgccctttctaattcgttgaataattgagttggaatttt
gatggggattgtattgaatctgtagattgcttttggcaagatggccattt
ttacaatagtgatcctgccaatccataagcatgggagatttttccatctt
ctgagatcttcttttattttctttctttagagactttgaagttcttatca
tacagatctttccactttccttagttagagtcacgccaaaggtatttata
ttatttgtgactattgagaaaggtgttgttttcctaatttcttttctcag
cctgtttatccctttgtgtaacagaaaggccatgacttgtttgagttaat
tttatatcagctactttattgagctggtttatcaggcttagaagtctctt
ggtgggatttttagggtcacctgtatatatcatattcattatcatctggc

gaattcccaaattgaagctcaaaatgacacctacttttatacacatcttt
aattgtgtcattccttaaggtagacctcaattgaccattcagaagaaaaa
gtctgtggcctagaagtaaagactatatgagcataggaaattgagaggaa
tctttgtgcattgctggttaaaatgtaacatggtcagactttattgaata
atcacatggcaattcttgaaaataattaacttaaaattacaatataccta
acaaccccaacttgagggaaataattccaacattgaacacagagacttta
atctctatgtatacacaaaagttcaaatcagtgttactttcaaaagtctg
aagcaataatagtcctgtagtaattactgaacaaacaaaaacatattgga
tattctggctcatgtcgcagaatggatagctttttaagacattctgctca
gtgaaataagccattcacaaagatgaacatatcatttatatgatgtaata
gagcagtcaaccccatgtgggtacagaggagaactgtgattgataatagt
caagagagagtttattttatatggggtgtcaattgtgcaacaggaattct
aaagatggatgttggtggtggctacatagccatatgtatttaatgattct
ggcctgtatgcctaaaaactgtgacaagctagatgtagtttggcacaaca
aagcacactgatagtacatgataatgacagagcaaacagtttgtttccac
taacaatgcctggaaaaaagtactaatgagggcaggaatggaaatggtga
gacacaaggaaaaagccccataagtgcttttctagattctcagggaaaca
ttttttaaattgtgctaataatgttctgttttactttatgtgagcatgga
aaatgagaaatgattctgaaacttaagttttattttatttctattcttca
taaaatcgtgacatatgctgcacttgctgaatcgtaagtgagtgaaacca
tagtgctggcataactcaacggatatgttttagacatcatttggctatta
tggaaattataacatagtattatatactcagacacttaatctttgcgaat
attca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_90986192_90987305
seq2: B6Ng01-219L06.g_67_1171

seq1  GAATTCCCAAATTGAAGCTCAAAATGACACCTACTTTTATACACATCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAATTGAAGCTCAAAATGACACCTACTTTTATACACATCTTT  50

seq1  AATTGTGTCATTCCTTAAGGTAGACCTCAATTGACCATTCAGAAGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGTCATTCCTTAAGGTAGACCTCAATTGACCATTCAGAAGAAAAA  100

seq1  GTCTGTGGCCTAGAAGTAAAGACTATATGAGCATAGGAAATTGAGAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGCCTAGAAGTAAAGACTATATGAGCATAGGAAATTGAGAGGAA  150

seq1  TCTTTGTGCATTGCTGGTTAAAATGTAACATGGTCAGACTTTATTGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGCATTGCTGGTTAAAATGTAACATGGTCAGACTTTATTGAATA  200

seq1  ATCACATGGCAATTCTTGAAAATAATTAACTTAAAATTACAATATACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATGGCAATTCTTGAAAATAATTAACTTAAAATTACAATATACCTA  250

seq1  ACAACCCCAACTTGAGGGAAATAATTCCAACATTGAACACAGAGACTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCCAACTTGAGGGAAATAATTCCAACATTGAACACAGAGACTTTA  300

seq1  ATCTCTATGTATACACAAAAGTTCAAATCAGTGTTACTTTCAAAAGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATGTATACACAAAAGTTCAAATCAGTGTTACTTTCAAAAGTCTG  350

seq1  AAGCAATAATAGTCCTGTAGTAATTACTGAACAAACAAAAACATATTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATAATAGTCCTGTAGTAATTACTGAACAAACAAAAACATATTGGA  400

seq1  TATTCTGGCTCATGTCGCAGAATGGATAGCTTTTTAAGACATTCTGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGGCTCATGTCGCAGAATGGATAGCTTTTTAAGACATTCTGCTCA  450

seq1  GTGAAATAAGCCATTCACAAAGATGAACATATCATTTATATGATGTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATAAGCCATTCACAAAGATGAACATATCATTTATATGATGTAATA  500

seq1  GAGCAGTCAACCCCATGTGGGTACAGAGGAGAACTGTGATTGATAATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCAACCCCATGTGGGTACAGAGGAGAACTGTGATTGATAATAGT  550

seq1  CAAGAGAGAGTTTATTTTATATGGGGTGTCAATTGTGCAACAGGAATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGAGTTTATTTTATATGGGGTGTCAATTGTGCAACAGGAATTCT  600

seq1  AAAGATGGATGTTGGTGGTGGCTACATAGCCATATGTATTTAATGATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGATGTTGGTGGTGGCTACATAGCCATATGTATTTAATGATTCT  650

seq1  GGCCTGTATGCCTAAAAACTGTGACAAGCTAGATGTAGTTTGGCACAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTATGCCTAAAAACTGTGACAAGCTAGATGTAGTTTGGCACAACA  700

seq1  AAGCACACTGATAGTACATGATAATGACAGAGCAAACAGTTTGTTTCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACTGATAGTACATGATAATGACAGAGCAAACAGTTTGTTTCCAC  750

seq1  TAACAATGCCTGGAAAAAAGTACTAATGAGGGCAGGAATGGAAATGGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATGCCTGGAAAAAAGTACTAATGAGGGCAGGAATGGAAATGGTGA  800

seq1  GACACAAGGAAAAAGCCCCATAAGTGCTTTTCTAGATTCTCAGGGAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAGGAAAAAGCCCCATAAGTGCTTTTCTAGATTCTCAGGGAAACA  850

seq1  TTTTTTAAATTGTGCTAATAATGTTCTGTTTTACTTTATGTGAGCATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATTGTGCTAATAATGTTCTGTTTTACTTTATGTGAGCATGGA  900

seq1  AAATGAGAAATGATTCTGAAACTTAAGTTTTATTTTATTTCTATTCTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAAATGATTCTGAAACTTAAGTTTTATTTTATTTCTATTCTTCA  950

seq1  TAAAAATCGTGACATATGCTGCACTTGCTGAATCGTAGGTGAGTTGAAAC  1000
      | ||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  T-AAAATCGTGACATATGCTGCACTTGCTGAATCGTAAGTGAG-TGAAAC  998

seq1  CATAGGTTGGCTGGCAATAACTCAACGGATATGTTTTAGGACCATCATTT  1050
      |||||    |||||| |||||||||||||||||||||||   ||||||||
seq2  CATAG---TGCTGGC-ATAACTCAACGGATATGTTTTAG--ACATCATTT  1042

seq1  GGCTA-TATGGAATTTATAACATAGTATTATATACCTCAGAACCACTAAA  1099
      ||||| ||||||| |||||||||||||||||||| ||||||  |||| ||
seq2  GGCTATTATGGAAATTATAACATAGTATTATATA-CTCAGA--CACTTAA  1089

seq1  TC-TTGCGAATATTCA  1114
      || |||||||||||||
seq2  TCTTTGCGAATATTCA  1105