BAC Information

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BAC

Clone NameB6Ng01-221A12
Chromosome9 (Build37)
Map Location 36,121,028 - 36,238,834
singlet/doubletdoublet
Overlap genenone
Upstream geneCdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485
Downstream geneEG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221A12.bB6Ng01-221A12.g
ACCGA036437GA036438
length9991,019
definitionB6Ng01-221A12.b B6Ng01-221A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,121,028 - 36,122,001)(36,237,834 - 36,238,834)
sequence
gaattcaaagaaactaggtctctacttccttgaaagatatggaatacagg
atatatctaaacaatgtgtattgattcaagtaaggacaaacaagtgtttt
tgaagaacatttacatgcattttcttctgtcatgagactagccagtgctt
tactgtcagaaccccagaattgccatcatctccacacacccatagaatgc
acaccttgtgttgaggattagggaagatactaatgacagtgatgtggcta
cataggtaggtttgcattccaaaggtgaaaaatcaccaaaaatctgttta
tttttcttatgacaagttaaggattaagtgaaattatctggatttttagt
agagtatatcaataaatctggctgccaactgagaagaatttatagaggta
gtctttgctaataagaaatgagaggcccctccactgttttccatggtaaa
ctcaacagaatatggaatccacaccaacatacttcttgacaatgttccag
aaaatttttatctggttattttttatacttttgtatccttatttatattt
atttgttgacaaattgttctagtttcttttagttctttatattaggtttt
tttaataaaggagaaatatattcaataaataaccttattttctaacttaa
aagttataataaacaaaaatatatgaaattcaggaggcaatcaggaggga
gctaagaatgtagataggaagaggaataaacaaaacattaaacaggaaag
caatagggagctatcctggctaattttatgtcaacttgatacaagttaga
tccctctgaaaggagggaaccttaatttaaaaatacctccaatagtatca
agatatacttaaaattttcttaaatagtggttgatgggtaagggtccagt
cattgtgggtggcaatattcctggataagtagttcctggctttttatatt
aaaacagtttaaataaaaacatgagaaacacgccccgtaaaaaataact
gaattcccttacacagagtcatgaagcttccaccaaggggctcccctcca
ttgatgccagataagtccatcctctgctacatatccaaatggagccatgg
gttgctttgtgtgtactctttggttggtggtttagtccctatgaggtttg
gttgatattgttcttcctatgggattacaaatccattcaactccttcagt
tcttgccctaacttctccactggggtccccgtgctcattcagatatttgg
ctaagtgtatcagcttttgtatatgtcaggctctgtcagagcctctcagt
ggacagttataccaagctcctgtcagcaagttctttgtatcagcaatatg
ttgtctggtttgagcttttaacaataacaacaacaacaacaacaacaaca
acaacaacaacaacaaaaacaacaacaacaacaaataatccaaaaccaga
aaaacagagaatttgtatatctctgtgtttagtaactgcttccaggaact
caaagttttagcttttgctgcactttccataaaaactttgaaatggggac
tcatggctgagagactcaaatctaagatctggtggctaatgccctggaag
ggtcctgcacaataccctgaaattctatgcagaaggaaactacttgtctc
aacctgacacatcaaaatgttaaaaattctgtgttcatggaaatggttta
tatgcctacatatatcttttcatagtccaacaaaatagtagtaaaaacaa
atagcagattttagttttgtcttccatacaggccagtgttattctcctaa
cataggatataaaagacaggaaaaattaaagatctttgttgtaaagtatg
agaaaagaaaaacagctcttccattgagggtcttgttttttctgtttctg
ctgatgagttcaagaagcttcacataccatgggtaaagtcttaaaagaat
ctatcctattctccttacacatattcaaatgcccctattagaccttaatg
gccaacttgacattacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_36121028_36122001
seq2: B6Ng01-221A12.b_47_1025

seq1  GAATTCAAAGAAACTAGGTCTCTACTTCCTTGAAAGATATGGAATACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAAACTAGGTCTCTACTTCCTTGAAAGATATGGAATACAGG  50

seq1  ATATATCTAAACAATGTGTATTGATTCAAGTAAGGACAAACAAGTGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTAAACAATGTGTATTGATTCAAGTAAGGACAAACAAGTGTTTT  100

seq1  TGAAGAACATTTACATGCATTTTCTTCTGTCATGAGACTAGCCAGTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACATTTACATGCATTTTCTTCTGTCATGAGACTAGCCAGTGCTT  150

seq1  TACTGTCAGAACCCCAGAATTGCCATCATCTCCACACACCCATAGAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCAGAACCCCAGAATTGCCATCATCTCCACACACCCATAGAATGC  200

seq1  ACACCTTGTGTTGAGGATTAGGGAAGATACTAATGACAGTGATGTGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGTGTTGAGGATTAGGGAAGATACTAATGACAGTGATGTGGCTA  250

seq1  CATAGGTAGGTTTGCATTCCAAAGGTGAAAAATCACCAAAAATCTGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTAGGTTTGCATTCCAAAGGTGAAAAATCACCAAAAATCTGTTTA  300

seq1  TTTTTCTTATGACAAGTTAAGGATTAAGTGAAATTATCTGGATTTTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTATGACAAGTTAAGGATTAAGTGAAATTATCTGGATTTTTAGT  350

seq1  AGAGTATATCAATAAATCTGGCTGCCAACTGAGAAGAATTTATAGAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATATCAATAAATCTGGCTGCCAACTGAGAAGAATTTATAGAGGTA  400

seq1  GTCTTTGCTAATAAGAAATGAGAGGCCCCTCCACTGTTTTCCATGGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGCTAATAAGAAATGAGAGGCCCCTCCACTGTTTTCCATGGTAAA  450

seq1  CTCAACAGAATATGGAATCCACACCAACATACTTCTTGACAATGTTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGAATATGGAATCCACACCAACATACTTCTTGACAATGTTCCAG  500

seq1  AAAATTTTTATCTGGTTATTTTTTATACTTTTGTATCCTTATTTATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTTATCTGGTTATTTTTTATACTTTTGTATCCTTATTTATATTT  550

seq1  ATTTGTTGACAAATTGTTCTAGTTTCTTTTAGTTCTTTATATTAGGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGACAAATTGTTCTAGTTTCTTTTAGTTCTTTATATTAGGTTTT  600

seq1  TTTAATAAAGGAGAAATATATTCAATAAATAACCTTATTTTCTAACTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAAGGAGAAATATATTCAATAAATAACCTTATTTTCTAACTTAA  650

seq1  AAGTTATAATAAACAAAAATATATGAAATTCAGGAGGCAATCAGGAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATAATAAACAAAAATATATGAAATTCAGGAGGCAATCAGGAGGGA  700

seq1  GCTAAGAATGTAGATAGGAAGAGGAATAAACAAAACATTAAACAGGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAATGTAGATAGGAAGAGGAATAAACAAAACATTAAACAGGAAAG  750

seq1  CAATAGGGAGCTATCCTGGCTAATTTTATGTCAACTTGATACAAGTTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGGAGCTATCCTGGCTAATTTTATGTCAACTTGATACAAGTTAGA  800

seq1  TCCCTCTGAAAGGAGGGAACCTTAATTTAAAAATACCTCC-ATAGTATCA  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCCTCTGAAAGGAGGGAACCTTAATTTAAAAATACCTCCAATAGTATCA  850

seq1  AGATATACTT-AAATTTTCTTAAATAGTGGTTGATGGGTAAGGGTCCAGT  898
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGATATACTTAAAATTTTCTTAAATAGTGGTTGATGGGTAAGGGTCCAGT  900

seq1  CATTGTGGGTGGCAATATTCCTGGATAAGTAGTT-CTGGC-TTTTATAAT  946
      |||||||||||||||||||||||||||||||||| ||||| ||||||| |
seq2  CATTGTGGGTGGCAATATTCCTGGATAAGTAGTTCCTGGCTTTTTATATT  950

seq1  AAAACAGTTTAAAT-AAAACATGAGAAAC  974
      |||||||||||||| ||||||||||||||
seq2  AAAACAGTTTAAATAAAAACATGAGAAAC  979

seq1: chr9_36237834_36238834
seq2: B6Ng01-221A12.g_72_1090 (reverse)

seq1  GGGGT-ATGTCAAGTTGGCCA-TAAAGTCTAATTAGGGCATCTG-ATATG  47
      ||||| ||||||||||||||| ||| |||||||  |||||| || |||||
seq2  GGGGTAATGTCAAGTTGGCCATTAAGGTCTAATAGGGGCATTTGAATATG  50

seq1  TGTTAAGGA-AATA-GAT-GA-TCTTTTAAGACTTTACCCATGGTATCTG  93
      || |||||| |||| ||| || ||||||||||||||||||||||||| ||
seq2  TG-TAAGGAGAATAGGATAGATTCTTTTAAGACTTTACCCATGGTATGTG  99

seq1  AAGCTTCTTG-ACTCATCAGCAG-AACAGGAAAAAC-AGACCCTCAAT-G  139
      |||||||||| |||||||||||| ||||| |||||| ||||||||||| |
seq2  AAGCTTCTTGAACTCATCAGCAGAAACAGAAAAAACAAGACCCTCAATGG  149

seq1  AAGAGCTGTTTTTC-TTTCTCATACTTTAC-ACAAAGATCTTTAA-TTTT  186
      |||||||||||||| ||||||||||||||| |||||||||||||| ||||
seq2  AAGAGCTGTTTTTCTTTTCTCATACTTTACAACAAAGATCTTTAATTTTT  199

seq1  CCTGTC-TTTATATCCTATGTTAGGAGAATAACACTGGCCTGTATGGAAG  235
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTTTATATCCTATGTTAGGAGAATAACACTGGCCTGTATGGAAG  249

seq1  ACAAAACT-AAATCTGCTATTTGTTTTTACTACTATTTTGTTGGACTATG  284
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTAAAATCTGCTATTTGTTTTTACTACTATTTTGTTGGACTATG  299

seq1  -AAAGATATATGTAGGCATATAAACCATTTCCATGAACACAGAA-TTTTA  332
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAAGATATATGTAGGCATATAAACCATTTCCATGAACACAGAATTTTTA  349

seq1  ACATTTTGATGTGTCAGGTTGAGACAAGTAGTTTCCTTCTGCATAGAA-T  381
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACATTTTGATGTGTCAGGTTGAGACAAGTAGTTTCCTTCTGCATAGAATT  399

seq1  TCAGGGTATTGTGCAGGACCCTTCCAGGGCATTAGCCACCAGATCTTAGA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTATTGTGCAGGACCCTTCCAGGGCATTAGCCACCAGATCTTAGA  449

seq1  TTTGAGTCTCTCAGCCATGAGTCCCCATTTCAAAGTTTTTATGGAAAGTG  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTCTCTCAGCCATGAGTCCCCATTTCAAAGTTTTTATGGAAAGTG  499

seq1  CAGCAAAAGCTAAAACTTTGAGTTCCTGGAAGCAGTTACTAAACACAGAG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAAGCTAAAACTTTGAGTTCCTGGAAGCAGTTACTAAACACAGAG  549

seq1  ATATACAAATTCTCTGTTTTTCTGGTTTTGGATTATTTGTTGTTGTTGTT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAAATTCTCTGTTTTTCTGGTTTTGGATTATTTGTTGTTGTTGTT  599

seq1  GTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTGT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTGT  649

seq1  TAAAAGCTCAAACCAGACAACATATTGCTGATACAAAGAACTTGCTGACA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTCAAACCAGACAACATATTGCTGATACAAAGAACTTGCTGACA  699

seq1  GGAGCTTGGTATAACTGTCCACTGAGAGGCTCTGACAGAGCCTGACATAT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTGGTATAACTGTCCACTGAGAGGCTCTGACAGAGCCTGACATAT  749

seq1  ACAAAAGCTGATACACTTAGCCAAATATCTGAATGAGCACGGGGACCCCA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCTGATACACTTAGCCAAATATCTGAATGAGCACGGGGACCCCA  799

seq1  GTGGAGAAGTTAGGGCAAGAACTGAAGGAGTTGAATGGATTTGTAATCCC  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAGTTAGGGCAAGAACTGAAGGAGTTGAATGGATTTGTAATCCC  849

seq1  ATAGGAAGAACAATATCAACCAAACCTCATAGGGACTAAACCACCAACCA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGAACAATATCAACCAAACCTCATAGGGACTAAACCACCAACCA  899

seq1  AAGAGTACACACAAAGCAACCCATGGCTCCATTTGGATATGTAGCAGAGG  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTACACACAAAGCAACCCATGGCTCCATTTGGATATGTAGCAGAGG  949

seq1  ATGGACTTATCTGGCATCAATGGAGGGGAGCCCCTTGGTGGAAGCTTCAT  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTATCTGGCATCAATGGAGGGGAGCCCCTTGGTGGAAGCTTCAT  999

seq1  GACTCTGTGTAAGGGAATTC  1001
      ||||||||||||||||||||
seq2  GACTCTGTGTAAGGGAATTC  1019