BAC Information

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BAC

Clone NameB6Ng01-221K18
Chromosome9 (Build37)
Map Location 92,456,737 - 92,567,061
singlet/doubletdoublet
Overlap genePlod2, LOC100039921
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4
Downstream geneLOC100039931, LOC100039944, LOC667009, LOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221K18.bB6Ng01-221K18.g
ACCGA036900GA036901
length1,203620
definitionB6Ng01-221K18.b B6Ng01-221K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,456,737 - 92,457,915)(92,566,442 - 92,567,061)
sequence
gaattccttcttctcttccttcctcacatacttaatttaatatatcagtt
aacttgttgaattattcaaaacacacccaaatgagttgcttttcacattc
ttcattgctactccttggttccaatcatgatctttagcctagagtgttgt
aactcaccccccgaccccaacactccctcctgccccagccagcagtgcct
gaatttattttgtttctttcagagaagccaggcagtcctgataaacagta
gtcataatgattgagaaagctccattatatcgcactaagcattttctttg
gcctcaaatctgggatcctgtcacatcaaacatattttattcagggcagc
atatttgatataaagtagaatgtttagaaattagatttaatgagtaatag
gtgaatgttgcttgctattagcaaatcctaatcttggctttgtattttat
ccctgtcctcaaccttctgaaagcatctgaggtcaagattaaaatctgca
gtgatctgtgaggccctctgtagtttacaagcagttctgaggtttgcgtg
tgccacatcttgtcttgcttgatatcttctgcccatggatctgcctgcct
tgtcctttcccaaggcagattccatgacatactttgaattgattgttgct
tcttactagagagcttccagcatattatctgcatggttcacagcctctgc
attagactctcctctcaccgtgctatgtgtgtgactcagaattgcagcat
tacagaggccacgactcccagtgttttcctgtccaggcgcctcagcagaa
agtatcagaagtatttgttcctttcgtatttgccccatgggcaacaaaga
ttgattttctttttatctttttattcccttctggactactgaggctttta
ggaacactgtctggcacatggtccttaacatgcagtgaagaggctgaagg
attattctggcatcttatagaatgttttattccctcacttggataactgt
acaggacagcatcttcccctgtctggggcctggttccttctcagaagcct
ggtgcaatgttcttttcatcttgcatcagataccttttttctccttcagt
ggagtgcatttaacccacttcttcctatttttcgaatggcagaagaatgg
atctcttgccctatcctagtatttaatctagccttctttcaaggaaccac
cta

gaattcttaagttgtttaaggctcattaggcaatcttccaacacacggac
ttcctgtgattttgcatactacataagaatttgctgacccgaatgtactg
atcatcctctccagtcttatataagtcattgtgaatgaatatgcttatcc
acagctaggtgagcaagatcactgactgagagaggcaggcgagctgcagt
ggatgtgatgctaaacagctcccagcccctgaacagtagcttttaactaa
gccttcacagaacattctaactacttgtgtttctgctcaataagcccctt
gggcctcgaaccacctttcttaggtagaaagtggtattctgcccacaata
ccacctggaggcctggtgcaactgcagatccactccagactgactgaccc
agtaccttaacctgagtaacaattaggaagcactgttctaagagaagcag
ttgttaaaagacaagtattagcattggggaacgtcttcagaacctttggg
atcttactcaagatggattcaatcaacatctcttgagtatgacctaaaaa
ctgttttaaaaattgcttcagatgattctggagcaaacatgagaataaga
atggggtggggggggtgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92456737_92457915
seq2: B6Ng01-221K18.b_47_1249

seq1  GAATTCCTTCTTCTCTTCCTTCCTCACATACTTAATTTAATATATCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTTCTCTTCCTTCCTCACATACTTAATTTAATATATCAGTT  50

seq1  AACTTGTTGAATTATTCAAAACACACCCAAATGAGTTGCTTTTCACATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTTGAATTATTCAAAACACACCCAAATGAGTTGCTTTTCACATTC  100

seq1  TTCATTGCTACTCCTTGGTTCCAATCATGATCTTTAGCCTAGAGTGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCTACTCCTTGGTTCCAATCATGATCTTTAGCCTAGAGTGTTGT  150

seq1  AACTCACCCCCCGACCCCAACACTCCCTCCTGCCCCAGCCAGCAGTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACCCCCCGACCCCAACACTCCCTCCTGCCCCAGCCAGCAGTGCCT  200

seq1  GAATTTATTTTGTTTCTTTCAGAGAAGCCAGGCAGTCCTGATAAACAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTTTGTTTCTTTCAGAGAAGCCAGGCAGTCCTGATAAACAGTA  250

seq1  GTCATAATGATTGAGAAAGCTCCATTATATCGCACTAAGCATTTTCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAATGATTGAGAAAGCTCCATTATATCGCACTAAGCATTTTCTTTG  300

seq1  GCCTCAAATCTGGGATCCTGTCACATCAAACATATTTTATTCAGGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAATCTGGGATCCTGTCACATCAAACATATTTTATTCAGGGCAGC  350

seq1  ATATTTGATATAAAGTAGAATGTTTAGAAATTAGATTTAATGAGTAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGATATAAAGTAGAATGTTTAGAAATTAGATTTAATGAGTAATAG  400

seq1  GTGAATGTTGCTTGCTATTAGCAAATCCTAATCTTGGCTTTGTATTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTTGCTTGCTATTAGCAAATCCTAATCTTGGCTTTGTATTTTAT  450

seq1  CCCTGTCCTCAACCTTCTGAAAGCATCTGAGGTCAAGATTAAAATCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCTCAACCTTCTGAAAGCATCTGAGGTCAAGATTAAAATCTGCA  500

seq1  GTGATCTGTGAGGCCCTCTGTAGTTTACAAGCAGTTCTGAGGTTTGCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTGTGAGGCCCTCTGTAGTTTACAAGCAGTTCTGAGGTTTGCGTG  550

seq1  TGCCACATCTTGTCTTGCTTGATATCTTCTGCCCATGGATCTGCCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATCTTGTCTTGCTTGATATCTTCTGCCCATGGATCTGCCTGCCT  600

seq1  TGTCCTTTCCCAAGGCAGATTCCATGACATACTTTGAATTGATTGTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTCCCAAGGCAGATTCCATGACATACTTTGAATTGATTGTTGCT  650

seq1  TCTTACTAGAGAGCTTCCAGCATATTATCTGCATGGTTCACAGCCTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTAGAGAGCTTCCAGCATATTATCTGCATGGTTCACAGCCTCTGC  700

seq1  ATTAGACTCTCCTCTCACCGTGCTATGTGTGTGACTCAGAATTGCAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACTCTCCTCTCACCGTGCTATGTGTGTGACTCAGAATTGCAGCAT  750

seq1  TACAGAGGCCACGACTCCCAGTG-TTTCCTGTCCAGGCGCCTCAGCAGAA  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TACAGAGGCCACGACTCCCAGTGTTTTCCTGTCCAGGCGCCTCAGCAGAA  800

seq1  AGTATCAGAAGTA-TTGT--CCTTCGTATTTGCCCCAT-GGCAACAAAGA  845
      ||||||||||||| ||||  | |||||||||||||||| |||||||||||
seq2  AGTATCAGAAGTATTTGTTCCTTTCGTATTTGCCCCATGGGCAACAAAGA  850

seq1  TTGATTT--CTTTTATC-TTTTATTCCC-TCTGGACTACTGAGGC-TTTA  890
      |||||||   ||||||| |||||||||| |||||||||||||||| ||||
seq2  TTGATTTTCTTTTTATCTTTTTATTCCCTTCTGGACTACTGAGGCTTTTA  900

seq1  GG-ACACTGTCTGGCACATGGTCC-TAACATGCAGTGAAGAGGCTG-AGG  937
      || ||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  GGAACACTGTCTGGCACATGGTCCTTAACATGCAGTGAAGAGGCTGAAGG  950

seq1  A-TATTCTGGCATC-TATAGAATG-TTTATT-CCTCACTTGGA-AACTGT  982
      | |||||||||||| ||||||||| |||||| ||||||||||| ||||||
seq2  ATTATTCTGGCATCTTATAGAATGTTTTATTCCCTCACTTGGATAACTGT  1000

seq1  ACAGGACAGCATCTTCCCCTGTCT-GGGCCTGG-TACTTCTCAG-AGC--  1027
      |||||||||||||||||||||||| |||||||| | |||||||| |||  
seq2  ACAGGACAGCATCTTCCCCTGTCTGGGGCCTGGTTCCTTCTCAGAAGCCT  1050

seq1  TGTGCATGGTCTTTTTCATCTTGGCTTCCAGATACCTTTTCTC----TCA  1073
       |||||  ||  |||||||||||  |  |||||||||||| ||    |||
seq2  GGTGCAATGTTCTTTTCATCTTGCAT--CAGATACCTTTTTTCTCCTTCA  1098

seq1  GT-GAGTGCATTTAA-CCACTTCTTCTTA-TTTTCGAAT-GCAGAAGATG  1119
      || |||||||||||| |||||||||| || ||||||||| ||||||||  
seq2  GTGGAGTGCATTTAACCCACTTCTTCCTATTTTTCGAATGGCAGAAGAAT  1148

seq1  GGAATCTCTTGCCTCTATTTCTTATTATTTAAATCTTACCCTTCCTTC-A  1168
      || |||||||||| |||  || || ||||| |||| || ||||| ||| |
seq2  GG-ATCTCTTGCC-CTA--TCCTAGTATTT-AATC-TAGCCTTCTTTCAA  1192

seq1  GGAACCACCTA  1179
      |||||||||||
seq2  GGAACCACCTA  1203


seq1: chr9_92566442_92567061
seq2: B6Ng01-221K18.g_67_686 (reverse)

seq1  TCTCACCCCCCCCACCCCATTCTTATTCTCATGTTTGCTCCAGAATCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCCCCCCCACCCCATTCTTATTCTCATGTTTGCTCCAGAATCATC  50

seq1  TGAAGCAATTTTTAAAACAGTTTTTAGGTCATACTCAAGAGATGTTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAATTTTTAAAACAGTTTTTAGGTCATACTCAAGAGATGTTGATT  100

seq1  GAATCCATCTTGAGTAAGATCCCAAAGGTTCTGAAGACGTTCCCCAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATCTTGAGTAAGATCCCAAAGGTTCTGAAGACGTTCCCCAATGC  150

seq1  TAATACTTGTCTTTTAACAACTGCTTCTCTTAGAACAGTGCTTCCTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTGTCTTTTAACAACTGCTTCTCTTAGAACAGTGCTTCCTAATT  200

seq1  GTTACTCAGGTTAAGGTACTGGGTCAGTCAGTCTGGAGTGGATCTGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTCAGGTTAAGGTACTGGGTCAGTCAGTCTGGAGTGGATCTGCAGT  250

seq1  TGCACCAGGCCTCCAGGTGGTATTGTGGGCAGAATACCACTTTCTACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCAGGCCTCCAGGTGGTATTGTGGGCAGAATACCACTTTCTACCTA  300

seq1  AGAAAGGTGGTTCGAGGCCCAAGGGGCTTATTGAGCAGAAACACAAGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTGGTTCGAGGCCCAAGGGGCTTATTGAGCAGAAACACAAGTAG  350

seq1  TTAGAATGTTCTGTGAAGGCTTAGTTAAAAGCTACTGTTCAGGGGCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGTTCTGTGAAGGCTTAGTTAAAAGCTACTGTTCAGGGGCTGGG  400

seq1  AGCTGTTTAGCATCACATCCACTGCAGCTCGCCTGCCTCTCTCAGTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTAGCATCACATCCACTGCAGCTCGCCTGCCTCTCTCAGTCAGT  450

seq1  GATCTTGCTCACCTAGCTGTGGATAAGCATATTCATTCACAATGACTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGCTCACCTAGCTGTGGATAAGCATATTCATTCACAATGACTTAT  500

seq1  ATAAGACTGGAGAGGATGATCAGTACATTCGGGTCAGCAAATTCTTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACTGGAGAGGATGATCAGTACATTCGGGTCAGCAAATTCTTATGT  550

seq1  AGTATGCAAAATCACAGGAAGTCCGTGTGTTGGAAGATTGCCTAATGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCAAAATCACAGGAAGTCCGTGTGTTGGAAGATTGCCTAATGAGC  600

seq1  CTTAAACAACTTAAGAATTC  620
      ||||||||||||||||||||
seq2  CTTAAACAACTTAAGAATTC  620


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