BAC Information

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BAC

Clone NameB6Ng01-222K16
Chromosome9 (Build37)
Map Location 120,215,048 - 120,347,490
singlet/doubletdoublet
Overlap geneMyrip, LOC666044
Upstream geneMyd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898
Downstream geneEif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4, Trak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222K16.bB6Ng01-222K16.g
ACCGA037625GA037626
length1,13792
definitionB6Ng01-222K16.b B6Ng01-222K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,346,342 - 120,347,490)(120,215,048 - 120,215,139)
sequence
gaattcagttcttacagacaggagtcatgatctaaaaaaataaatataac
aaatgttaagccaactcaaaattaagaaatatatcaatgtgattaacaac
atcaataaattttagaagaaaaactgaccaggcatggggctcacacttag
aatcacagcctgaagctgagagactgttgtgaattaaggtcagcctgggc
cacttagtgagttctgggccatctaggctccacagtgagaagaccctgcc
ttaaaaaaccaaatcaaaccaaaactccagtcctgattttcatcatgtgg
ggctaggaaaggcttcttagtcttgataagagctgctcaactggaagcaa
gcagcagacctgactgtgaaccattggagtggggtcaccaaggaagaaag
gtcccacccactgctgtgacttcacactgagcacacgctgtgaccactgc
aggaagacaggagaaaggaatgattgtaaggatggaaggggaaagaccaa
agtgttgcggggctgagccagccgtttgcaattccagctgctcatgaggc
tgaagctaaggtggacagtgaactccaggccaactgggcaacttgaagag
attctgcctccaaagtaaagaaggtcctcagaggaagaggaggaggaggg
agactggaggaggacggggatagctctgtggcagagcacttgctagtgtg
catgagttcattctttgtagataattagaatagctaagaacaccacatga
gagactagcagagttaacaaaagagccattagagcgctaagttattacag
aataaaaaaagttagtgccgttctataagcactgatagaaacatgtgaca
gatgaagaaactctccctttcagcatcattaaaatgtaaattaaaaatta
cttaacaggaaaagcatgaggggtctgaactgaaaagtctaaaaacttta
caagtgccggacatcctggatggaaaagcttggctttacaaagatataat
tattcctaagtattatgcatacattcagcacacccaatacacttgtgtgt
tttgcaattgacagattttagagagcattatatgagtaaaggtgagagat
gcagaaagtttcagaaaatgatgtaagcatcaaccaa
actcgagtttgggaaaatgtcctgctagccacatctggtgttaaactagc
agtcttgtagatcatgtccggggtggggtggggtggtggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_120346342_120347490
seq2: B6Ng01-222K16.b_44_1180 (reverse)

seq1  TTGGTTGATGCTTACATCATTTTCTGAAACTCTCTTGGCATCTCTCAAAC  50
      ||||||||||||||||||||||||||||||| |||  |||||||||  ||
seq2  TTGGTTGATGCTTACATCATTTTCTGAAACTTTCT--GCATCTCTC--AC  46

seq1  CTTTACTCATATAATTGCTCTCTTAAAATCTGTTCAATTTGCAAAACACA  100
      |||||||||||||| ||||||| ||||||||| |||| ||||||||||||
seq2  CTTTACTCATATAA-TGCTCTC-TAAAATCTG-TCAA-TTGCAAAACACA  92

seq1  CAAGTTGTATTGGGTTGTGCTGAATGTATGCAT-ATACTTAGGAATAATT  149
      |||| ||||||||| |||||||||||||||||| |||||||||||||| |
seq2  CAAG-TGTATTGGG-TGTGCTGAATGTATGCATAATACTTAGGAATAA-T  139

seq1  TATATCTTTGTAAAGCCAAGCTTTTCCATCCAGGATTGTCCGGCACTTGT  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATATCTTTGTAAAGCCAAGCTTTTCCATCCAGGA-TGTCCGGCACTTGT  188

seq1  AAAGTTTTTAGACTTTTCAGTTCAGACCCCCTCATGCTTTTCCTGTTAAG  249
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAGTTTTTAGACTTTTCAGTTCAGA-CCCCTCATGCTTTTCCTGTTAAG  237

seq1  TAATTTTTAATTTACATTTTAATGATGCTGAAAGGGAGAGTTTCTTCATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAATTTACATTTTAATGATGCTGAAAGGGAGAGTTTCTTCATC  287

seq1  TGTCACATGTTTCTATCAGTGCTTATAGAACGGCACTAACTTTTTTTATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATGTTTCTATCAGTGCTTATAGAACGGCACTAACTTTTTTTATT  337

seq1  CTGTAATAACTTAGCGCTCTAATGGCTCTTTTGTTAACTCTGCTAGTCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATAACTTAGCGCTCTAATGGCTCTTTTGTTAACTCTGCTAGTCTC  387

seq1  TCATGTGGTGTTCTTAGCTATTCTAATTATCTACAAAGAATGAACTCATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGTGTTCTTAGCTATTCTAATTATCTACAAAGAATGAACTCATG  437

seq1  CACACTAGCAAGTGCTCTGCCACAGAGCTATCCCCGTCCTCCTCCAGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAGCAAGTGCTCTGCCACAGAGCTATCCCCGTCCTCCTCCAGTCT  487

seq1  CCCTCCTCCTCCTCTTCCTCTGAGGACCTTCTTTACTTTGGAGGCAGAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCCTCCTCTTCCTCTGAGGACCTTCTTTACTTTGGAGGCAGAAT  537

seq1  CTCTTCAAGTTGCCCAGTTGGCCTGGAGTTCACTGTCCACCTTAGCTTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAAGTTGCCCAGTTGGCCTGGAGTTCACTGTCCACCTTAGCTTCA  587

seq1  GCCTCATGAGCAGCTGGAATTGCAAACGGCTGGCTCAGCCCCGCAACACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATGAGCAGCTGGAATTGCAAACGGCTGGCTCAGCCCCGCAACACT  637

seq1  TTGGTCTTTCCCCTTCCATCCTTACAATCATTCCTTTCTCCTGTCTTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTTCCCCTTCCATCCTTACAATCATTCCTTTCTCCTGTCTTCCT  687

seq1  GCAGTGGTCACAGCGTGTGCTCAGTGTGAAGTCACAGCAGTGGGTGGGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTCACAGCGTGTGCTCAGTGTGAAGTCACAGCAGTGGGTGGGAC  737

seq1  CTTTCTTCCTTGGTGACCCCACTCCAATGGTTCACAGTCAGGTCTGCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCTTGGTGACCCCACTCCAATGGTTCACAGTCAGGTCTGCTGC  787

seq1  TTGCTTCCAGTTGAGCAGCTCTTATCAAGACTAAGAAGCCTTTCCTAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCAGTTGAGCAGCTCTTATCAAGACTAAGAAGCCTTTCCTAGCC  837

seq1  CCACATGATGAAAATCAGGACTGGAGTTTTGGTTTGATTTGGTTTTTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGATGAAAATCAGGACTGGAGTTTTGGTTTGATTTGGTTTTTTAA  887

seq1  GGCAGGGTCTTCTCACTGTGGAGCCTAGATGGCCCAGAACTCACTAAGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGTCTTCTCACTGTGGAGCCTAGATGGCCCAGAACTCACTAAGTG  937

seq1  GCCCAGGCTGACCTTAATTCACAACAGTCTCTCAGCTTCAGGCTGTGATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCTGACCTTAATTCACAACAGTCTCTCAGCTTCAGGCTGTGATT  987

seq1  CTAAGTGTGAGCCCCATGCCTGGTCAGTTTTTCTTCTAAAATTTATTGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGTGAGCCCCATGCCTGGTCAGTTTTTCTTCTAAAATTTATTGAT  1037

seq1  GTTGTTAATCACATTGATATATTTCTTAATTTTGAGTTGGCTTAACATTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAATCACATTGATATATTTCTTAATTTTGAGTTGGCTTAACATTT  1087

seq1  GTTATATTTATTTTTTTAGATCATGACTCCTGTCTGTAAGAACTGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTTATTTTTTTAGATCATGACTCCTGTCTGTAAGAACTGAATTC  1137

seq1: chr9_120215048_120215139
seq2: B6Ng01-222K16.g_74_165

seq1  ACTCGAGTTTGGGAAAATGTCCTGCTAGCCACATCTGGTGTTAAACTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAGTTTGGGAAAATGTCCTGCTAGCCACATCTGGTGTTAAACTAGC  50

seq1  AGTCTTGTAGATCATGTCCGGGGTGGGGTGGGGTGGTGGTGA  92
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGTAGATCATGTCCGGGGTGGGGTGGGGTGGTGGTGA  92