BAC Information

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BAC

Clone NameB6Ng01-222K23
Chromosome9 (Build37)
Map Location 43,217,978 - 43,346,377
singlet/doubletdoublet
Overlap genenone
Upstream geneTbcel, Grik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
Downstream geneLOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222K23.bB6Ng01-222K23.g
ACCGA037635GA037636
length868493
definitionB6Ng01-222K23.b B6Ng01-222K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,345,510 - 43,346,377)(43,217,978 - 43,218,476)
sequence
gaattcttctttaaccttctaactggctgtcagagtgtctagaagtctcc
tcaggggcacagcactgtgtgcaatccctagggacttcttggcttaccct
gttccttcatttccagaccaatcctcctgcacagccaggtcccctcccca
tctgtaacagccagggcctctaggctgtctggccagggagcttggtatct
gggatggcatgggaagacaggaagtccctttctgttcctgagctatctag
tgctagccattgggtcctttataaactccctcctgagttatacactactt
attgttgttattgctattgatccaccctctaaacagcagaggtcccaggg
ctcaatttaaaccatcagttacatcaataattcctttatttgtaaggttg
ttacatctgacactctttggatgcctttcaagacctaagaggaaagtcag
cactcttctcttaggagaaccgaggcacacagagatgtggaggttggcca
aagtccccagaatggaactagctacaggctcctgatacatcgctagctta
ttcaattcctggtctgccatttcccctccactgggctaaaggatgctctg
agttctgctgagcctctggggctgttcacaggcttactatatcccacaaa
agcagggttccctctacaggaaactataggccttctttttgcccccaggt
cctggcagtcctcagtcctgccttctgctctctgtgtcccagcctcaaag
cacaggcaataaagagttccgcctttgtctccgccccacccccaggtgca
gagatctgttttgcaaaaactgagaagactcttttctgtaaatggagggg
tggggctgggggtggatg
caagactagagtcaactggggtggttcgtgtgggtgtctcctcatctaac
aaatggctgtattctccccgttacctaacaggccttacctcgatatgtat
gtatccttggtgtctcttcttagattaatgtccagcccattgaattagga
tcctgcccttctgcctcattcaatactctttaaaggccctgtctctgaaa
caggtctagaactccagcatatgagctttgggtgataccactcggctcac
aatcctaggaaaagaagcatgaatacatgagcggtacccgtgagggacgg
aagcgatggtgaagccaccaccagcagagggtcagttgcttacgatgcat
cagagcatacccagtaggaacaagcctcttaggcaactagattggcttcc
tcaggtcaagtgaggacctggcatggacaatagggcccatgtccaatagg
gctctctctctctctctctctctctctctctctctctctcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_43345510_43346377
seq2: B6Ng01-222K23.b_50_917 (reverse)

seq1  CATCCACCCCCAGCCCCACCCCTCCATTTACAGAAAAGAGTCTTCTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACCCCCAGCCCCACCCCTCCATTTACAGAAAAGAGTCTTCTCAGT  50

seq1  TTTTGCAAAACAGATCTCTGCACCTGGGGGTGGGGCGGAGACAAAGGCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAAAACAGATCTCTGCACCTGGGGGTGGGGCGGAGACAAAGGCGG  100

seq1  AACTCTTTATTGCCTGTGCTTTGAGGCTGGGACACAGAGAGCAGAAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTATTGCCTGTGCTTTGAGGCTGGGACACAGAGAGCAGAAGGCA  150

seq1  GGACTGAGGACTGCCAGGACCTGGGGGCAAAAAGAAGGCCTATAGTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAGGACTGCCAGGACCTGGGGGCAAAAAGAAGGCCTATAGTTTCC  200

seq1  TGTAGAGGGAACCCTGCTTTTGTGGGATATAGTAAGCCTGTGAACAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGGGAACCCTGCTTTTGTGGGATATAGTAAGCCTGTGAACAGCCC  250

seq1  CAGAGGCTCAGCAGAACTCAGAGCATCCTTTAGCCCAGTGGAGGGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTCAGCAGAACTCAGAGCATCCTTTAGCCCAGTGGAGGGGAAAT  300

seq1  GGCAGACCAGGAATTGAATAAGCTAGCGATGTATCAGGAGCCTGTAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACCAGGAATTGAATAAGCTAGCGATGTATCAGGAGCCTGTAGCTA  350

seq1  GTTCCATTCTGGGGACTTTGGCCAACCTCCACATCTCTGTGTGCCTCGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTCTGGGGACTTTGGCCAACCTCCACATCTCTGTGTGCCTCGGT  400

seq1  TCTCCTAAGAGAAGAGTGCTGACTTTCCTCTTAGGTCTTGAAAGGCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAGAGAAGAGTGCTGACTTTCCTCTTAGGTCTTGAAAGGCATCC  450

seq1  AAAGAGTGTCAGATGTAACAACCTTACAAATAAAGGAATTATTGATGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTGTCAGATGTAACAACCTTACAAATAAAGGAATTATTGATGTAA  500

seq1  CTGATGGTTTAAATTGAGCCCTGGGACCTCTGCTGTTTAGAGGGTGGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGTTTAAATTGAGCCCTGGGACCTCTGCTGTTTAGAGGGTGGATC  550

seq1  AATAGCAATAACAACAATAAGTAGTGTATAACTCAGGAGGGAGTTTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAATAACAACAATAAGTAGTGTATAACTCAGGAGGGAGTTTATAA  600

seq1  AGGACCCAATGGCTAGCACTAGATAGCTCAGGAACAGAAAGGGACTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCAATGGCTAGCACTAGATAGCTCAGGAACAGAAAGGGACTTCCT  650

seq1  GTCTTCCCATGCCATCCCAGATACCAAGCTCCCTGGCCAGACAGCCTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCCATGCCATCCCAGATACCAAGCTCCCTGGCCAGACAGCCTAGA  700

seq1  GGCCCTGGCTGTTACAGATGGGGAGGGGACCTGGCTGTGCAGGAGGATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGCTGTTACAGATGGGGAGGGGACCTGGCTGTGCAGGAGGATTG  750

seq1  GTCTGGAAATGAAGGAACAGGGTAAGCCAAGAAGTCCCTAGGGATTGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAAATGAAGGAACAGGGTAAGCCAAGAAGTCCCTAGGGATTGCAC  800

seq1  ACAGTGCTGTGCCCCTGAGGAGACTTCTAGACACTCTGACAGCCAGTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTGTGCCCCTGAGGAGACTTCTAGACACTCTGACAGCCAGTTAG  850

seq1  AAGGTTAAAGAAGAATTC  868
      ||||||||||||||||||
seq2  AAGGTTAAAGAAGAATTC  868

seq1: chr9_43217978_43218476
seq2: B6Ng01-222K23.g_71_569

seq1  GAATTCCAAGACTAGAGTCAACTGGGGTGGTTCGTGTGGGTGTCTCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACTAGAGTCAACTGGGGTGGTTCGTGTGGGTGTCTCCTCA  50

seq1  TCTAACAAATGGCTGTATTCTCCCCGTTACCTAACAGGCCTTACCTCGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAAATGGCTGTATTCTCCCCGTTACCTAACAGGCCTTACCTCGAT  100

seq1  ATGTATGTATCCTTGGTGTCTCTTCTTAGATTAATGTCCAGCCCATTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTATCCTTGGTGTCTCTTCTTAGATTAATGTCCAGCCCATTGAA  150

seq1  TTAGGATCCTGCCCTTCTGCCTCATTCAATACTCTTTAAAGGCCCTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATCCTGCCCTTCTGCCTCATTCAATACTCTTTAAAGGCCCTGTCT  200

seq1  CTGAAACAGGTCTAGAACTCCAGCATATGAGCTTTGGGTGATACCACTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAGGTCTAGAACTCCAGCATATGAGCTTTGGGTGATACCACTCG  250

seq1  GCTCACAATCCTAGGAAAAGAAGCATGAATACATGAGCGGTACCCGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAATCCTAGGAAAAGAAGCATGAATACATGAGCGGTACCCGTGAG  300

seq1  GGACGGAAGCGATGGTGAAGCCACCACCAGCAGAGGGTCAGTTGCTTACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGAAGCGATGGTGAAGCCACCACCAGCAGAGGGTCAGTTGCTTACG  350

seq1  ATGCATCAGAGCATACCCAGTAGGAACAAGCCTCTTAGGCAACTAGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCAGAGCATACCCAGTAGGAACAAGCCTCTTAGGCAACTAGATTG  400

seq1  GCTTCCTCAGGTCAAGTGAGGACCTGGCATGGACAATAGGGCCCATGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCAGGTCAAGTGAGGACCTGGCATGGACAATAGGGCCCATGTCC  450

seq1  AATAGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT  499
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT  499