BAC Information

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BAC

Clone NameB6Ng01-224C04
Chromosome9 (Build37)
Map Location 67,977,416 - 68,138,826
singlet/doubletdoublet
Overlap geneLOC100041451
Upstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c
Downstream geneRora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224C04.bB6Ng01-224C04.g
ACCGA038683GA038684
length1,093562
definitionB6Ng01-224C04.b B6Ng01-224C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,137,715 - 68,138,826)(67,977,416 - 67,977,982)
sequence
gaattcttctcagctgaaattgaggcagtcatattgttgatattatctgg
ccattttttttaatccacatattttgtttctctgggaagaaaattagatt
acattaggttgtgtacaacaccaagcttcaaacattcatcctgtcaaaat
aatttcttaattagttgtacaacatactttttttctagacagaacttgtc
agaaaaacatcccgcagtgggggaaagcctaactgaattcattctgggga
ttttaataagactgcattctgccttctgcatggagggggaaggaagtaat
tgtctgccaattcttggcttccttggagacccacctcaggagggaaaaaa
tattcaggtactttttataaagaaatcccttacaattttgttaaggttta
aaaaaaaaaaaaagaattcataggtcattatgttgagttggcttggtaat
aagacctacagaaaaatgtattgagagtaaaataaaaccatctccctcaa
aagtaatatccatccatgggtttgtataaaatgaacagttgaaatatgag
aatccaattactggacactccattttggactgcaacacatttaaaatagt
ttcctccacctttgtgcttttaaatacgttgcttggtcccttaatatcaa
gcataacaaatcaaaattatttgggtttacagagcagaggagttgaagtt
tcaccctcattagttgtgatgtttctgagtgatagcaagagaagtggccg
acttttccacaactctttttcattttttttttaatctgaaggagacccac
agagttcttgtgaggagtgaatgccatcctggctaccatgccagaggagc
tcctgtcagtacctgcatgctacttctggaaaggtactagattagaccta
tacatttcataatcaggcatgaactagaagtcttgtccatagctctcaag
tgacacatcattgggtaaaagtggctaaccagtaccagagcagcatctag
agggatgaggtgaggtagacttgatacagtaacaggccctttcatgtctt
tcccattttgtacttgcccagtttgctttctgttgtgataaaa
actatctctgatatatatacactttcctggagggaggcttggtaagactc
aggaactcactgaaacttacacgacacaggaagttcctggaaactgcttg
gcaaggctgttctccaaggttatataaagtataagagttgcataggacaa
atatatatatatatactcttacatgctaagaataactgtctttgtggagc
ttggattagtatcaggcttggaagacgagcatgggacaggctgtataaga
caatactcagcgcttggctgaagtgctcacttctggaccaaggtactcat
tgctgggccagggtacttactgctgggctgaggtacttactcactgctgt
gctggggtattcactgatggcaaggtggaagaatggtgaatgggtctaca
gatacagaacctcaaagatggaagcaggtatttcagacccaccttacaca
tgctagcgtgccattgtggccataaaacaccaagaccaaggcaacatata
taaggaagggtttattggtttacaattacaaaggaatcagagtctgtcat
tggcatggaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_68137715_68138826
seq2: B6Ng01-224C04.b_46_1138 (reverse)

seq1  TTTTATCACAACAGAAAGCAAACTGGGCCAGGTACAAAATGGGGAAAAGA  50
      ||||||||||||||||||||||||||| || ||||||||||||  |||| 
seq2  TTTTATCACAACAGAAAGCAAACTGGG-CAAGTACAAAATGGG--AAAG-  46

seq1  ACATGAAAGGGGCCTGGTTACCTGGTATCAAGTTCTACCCTCAACCTCAT  100
      |||||||| |||||| |||||   |||||||| |||| |||| |||||||
seq2  ACATGAAA-GGGCCT-GTTAC--TGTATCAAG-TCTA-CCTC-ACCTCAT  89

seq1  TCCTTCTTAGATGCTTGCCTCTGGGTACTTGGTTAGCCACTTTTA-CCAA  149
       |||   ||||||||   |||| ||||| |||||||||||||||| ||||
seq2  CCCT--CTAGATGCT--GCTCT-GGTAC-TGGTTAGCCACTTTTACCCAA  133

seq1  TGATGTTGTCACTTGAGAGCTATGGACAAGACTTCTAGTTCATGCCCTGA  199
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  TGATG-TGTCACTTGAGAGCTATGGACAAGACTTCTAGTTCATG-CCTGA  181

seq1  TTATGAAATGTATAGGTCTAATCTAGTACCTTTCCAGAAGTAGCATGCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAATGTATAGGTCTAATCTAGTACCTTTCCAGAAGTAGCATGCAG  231

seq1  GTACCTGACAGGAGCTCCTCTGGCATGGTAGCCAGGATGGCATTCACTCC  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTA-CTGACAGGAGCTCCTCTGGCATGGTAGCCAGGATGGCATTCACTCC  280

seq1  TCACAAGAACTCTGTGGGTCTCCTTCAGATTAAAAAAAAAATGAAAAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGAACTCTGTGGGTCTCCTTCAGATTAAAAAAAAAATGAAAAAGA  330

seq1  GTTGTGGAAAAGTCGGCCACTTCTCTTGCTATCACTCAGAAACATCACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGAAAAGTCGGCCACTTCTCTTGCTATCACTCAGAAACATCACAA  380

seq1  CTAATGAGGGTGAAACTTCAACTCCTCTGCTCTGTAAACCCAAATAATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGGGTGAAACTTCAACTCCTCTGCTCTGTAAACCCAAATAATTT  430

seq1  TGATTTGTTATGCTTGATATTAAGGGACCAAGCAACGTATTTAAAAGCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTTATGCTTGATATTAAGGGACCAAGCAACGTATTTAAAAGCAC  480

seq1  AAAGGTGGAGGAAACTATTTTAAATGTGTTGCAGTCCAAAATGGAGTGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGAGGAAACTATTTTAAATGTGTTGCAGTCCAAAATGGAGTGTC  530

seq1  CAGTAATTGGATTCTCATATTTCAACTGTTCATTTTATACAAACCCATGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTGGATTCTCATATTTCAACTGTTCATTTTATACAAACCCATGG  580

seq1  ATGGATATTACTTTTGAGGGAGATGGTTTTATTTTACTCTCAATACATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATATTACTTTTGAGGGAGATGGTTTTATTTTACTCTCAATACATTT  630

seq1  TTCTGTAGGTCTTATTACCAAGCCAACTCAACATAATGACCTATGAATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGGTCTTATTACCAAGCCAACTCAACATAATGACCTATGAATTC  680

seq1  TTTTTTTTTTTTTTAAACCTTAACAAAATTGTAAGGGATTTCTTTATAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTAAACCTTAACAAAATTGTAAGGGATTTCTTTATAAA  730

seq1  AAGTACCTGAATATTTTTTCCCTCCTGAGGTGGGTCTCCAAGGAAGCCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCTGAATATTTTTTCCCTCCTGAGGTGGGTCTCCAAGGAAGCCAA  780

seq1  GAATTGGCAGACAATTACTTCCTTCCCCCTCCATGCAGAAGGCAGAATGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGCAGACAATTACTTCCTTCCCCCTCCATGCAGAAGGCAGAATGC  830

seq1  AGTCTTATTAAAATCCCCAGAATGAATTCAGTTAGGCTTTCCCCCACTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATTAAAATCCCCAGAATGAATTCAGTTAGGCTTTCCCCCACTGC  880

seq1  GGGATGTTTTTCTGACAAGTTCTGTCTAGAAAAAAAGTATGTTGTACAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTTTTTCTGACAAGTTCTGTCTAGAAAAAAAGTATGTTGTACAAC  930

seq1  TAATTAAGAAATTATTTTGACAGGATGAATGTTTGAAGCTTGGTGTTGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAGAAATTATTTTGACAGGATGAATGTTTGAAGCTTGGTGTTGTA  980

seq1  CACAACCTAATGTAATCTAATTTTCTTCCCAGAGAAACAAAATATGTGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCTAATGTAATCTAATTTTCTTCCCAGAGAAACAAAATATGTGGA  1030

seq1  TTAAAAAAAATGGCCAGATAATATCAACAATATGACTGCCTCAATTTCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAATGGCCAGATAATATCAACAATATGACTGCCTCAATTTCAG  1080

seq1  CTGAGAAGAATTC  1112
      |||||||||||||
seq2  CTGAGAAGAATTC  1093

seq1: chr9_67977416_67977982
seq2: B6Ng01-224C04.g_69_636

seq1  GAATTCACTATCTCTGATATATATACACTTTCCTGGAGGGAGGCTTGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATCTCTGATATATATACACTTTCCTGGAGGGAGGCTTGGTA  50

seq1  AGACTCAGGAAGTCACTGAAACTTACACGACACAGGAAGTTCCTGGAAAC  100
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGGAACTCACTGAAACTTACACGACACAGGAAGTTCCTGGAAAC  100

seq1  TGCTTGGCAAGGCTGTTCTCCAAGGTTATATAAAGTATAAGAGTTGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCAAGGCTGTTCTCCAAGGTTATATAAAGTATAAGAGTTGCATA  150

seq1  GGACAAATATATATATATATACTCTTACATGCTAAGAATAACTGTCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATATATATATATATACTCTTACATGCTAAGAATAACTGTCTTTG  200

seq1  TGGAGCTTGGATTAGTATCAGGCTTGGAAGACGAGCATGGGACAGGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTTGGATTAGTATCAGGCTTGGAAGACGAGCATGGGACAGGCTGT  250

seq1  ATAAGACAATACTCAGCGCTTGGCTGAAGTGCTCACTTCTGGACCAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACAATACTCAGCGCTTGGCTGAAGTGCTCACTTCTGGACCAAGGT  300

seq1  ACTCATTGCTGGGCCAGGGTACTTACTGCTGGGCTGAGGTACTTACTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTGCTGGGCCAGGGTACTTACTGCTGGGCTGAGGTACTTACTCAC  350

seq1  TGCTGTGCTGGGGTATTCACTGATGGCAAGGTGG-AGAATGGTGAATGGG  399
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGCTGTGCTGGGGTATTCACTGATGGCAAGGTGGAAGAATGGTGAATGGG  400

seq1  TCTACAGATACAGAACCTCAAAGATGGAAGCAGGTATTTCAGACCCACCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGATACAGAACCTCAAAGATGGAAGCAGGTATTTCAGACCCACCT  450

seq1  TACACATGCTAGCGTGCCATTGTGGCCATAAAACACCAAGACCAAGGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGCTAGCGTGCCATTGTGGCCATAAAACACCAAGACCAAGGCAA  500

seq1  CATATAGAAGGAAGGGTTTATTTGGTTTACAATTACAAAGGAATCAGAGT  549
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  CATATATAAGGAAGGGTTTA-TTGGTTTACAATTACAAAGGAATCAGAGT  549

seq1  CTGTCA-TGGCAGGGAGGC  567
      |||||| ||||| ||||||
seq2  CTGTCATTGGCATGGAGGC  568