BAC Information

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BAC

Clone NameB6Ng01-225L16
Chromosome9 (Build37)
Map Location 65,872,362 - 66,014,757
singlet/doubletdoublet
Overlap geneCsnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2
Upstream geneDpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik
Downstream geneHerc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225L16.bB6Ng01-225L16.g
ACCGA039849GA039850
length2571,181
definitionB6Ng01-225L16.b B6Ng01-225L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,014,501 - 66,014,757)(65,872,362 - 65,873,561)
sequence
tggatccttctccagggcccttgaccagccaacttctcagtttctctgcc
cctcagacatcagtccagccccactctggcctcgttgtcaagcaagcctc
tctcaggctggagttccaggggggacatatgcatagtcccttgcacatca
ttgtacccctagcacagaacacaggcaacggcaagaacaccaactcagac
accctgggcagttccttgccaagagaggccagtttcctgtgctggggggg
ggggggg
gaattctttacttagccaaactgccagtcatatgtgaatagcaaaaagat
catttttaaaactcagaattcttggggacagcaagatagcttagcagtta
aagggaccaccaaggcttggtgacttgttctcagaaggagaggactgact
cctgaaagttgtcttcaaatttacacttatatggagggtcttaccctcat
agaaagtacacacatacaatattttttaagagatgaagtacttagaagga
aagtaaggcaactgagtggatgtgtgtgggcgatttttttttaagattta
tttattttatttatatgagtatactgttcctatcttcagacacaacagaa
gagggcattggatcccatttgtagatggttgtgagccaccatgtggttgc
tgggaattgaactcaggacctcaggaagagcagccagtgctcttaaccac
tgagccatctttccagcccctgagtgtggactttttagagacagtttcca
tgaccctggtttgttttgttttgttttaagtagcttaaactttctatact
ttatgtaccttttcttatgaatctacacaggatgtatgttatcaagatgt
gtgaaaataaaaaagaagcatatattggttctagggatcaagacatccaa
cccaacaaagaagcagagtctcgccaatataatgaaaagttaggcgattc
cttgggtgatacctgttgccagttcagaaacttacagtcaggagtttggg
gagctgtgtcaccaaaatgatgcaaatctagacctagctcagtgtatcct
gcttgtctagcatgcgcattattctgggtcccatcactagtaatgcaata
aataatgcatgaatgagcaaataaataagacttgaggtagaattaatgat
ttgccataaatatataataattaagttagtatataaaattattttgtttt
tcacttgtttaaaattatgtttagaaattctgtgtctgtatgtatatata
tcacggtataggtgcccaagagacagaaagagcacaagatcccggataga
gttaaatgcagctgtgactacttgatatgggttggtgcttggggactgaa
ctggtccaatgagttagcagttaagtgctctaactgctgaactcctccag
ataactttggggttgacagaactttatatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_66014501_66014757
seq2: B6Ng01-225L16.b_53_309 (reverse)

seq1  CCCCCCCCCCCCCCAGCACAGGAAACTGGCCTCTCTTGGCAAGGAACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCAGCACAGGAAACTGGCCTCTCTTGGCAAGGAACTGC  50

seq1  CCAGGGTGTCTGAGTTGGTGTTCTTGCCGTTGCCTGTGTTCTGTGCTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTGTCTGAGTTGGTGTTCTTGCCGTTGCCTGTGTTCTGTGCTAGG  100

seq1  GGTACAATGATGTGCAAGGGACTATGCATATGTCCCCCCTGGAACTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAATGATGTGCAAGGGACTATGCATATGTCCCCCCTGGAACTCCAG  150

seq1  CCTGAGAGAGGCTTGCTTGACAACGAGGCCAGAGTGGGGCTGGACTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGAGGCTTGCTTGACAACGAGGCCAGAGTGGGGCTGGACTGATG  200

seq1  TCTGAGGGGCAGAGAAACTGAGAAGTTGGCTGGTCAAGGGCCCTGGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGGGCAGAGAAACTGAGAAGTTGGCTGGTCAAGGGCCCTGGAGAA  250

seq1  GGATCCA  257
      |||||||
seq2  GGATCCA  257

seq1: chr9_65872362_65873561
seq2: B6Ng01-225L16.g_60_1240

seq1  GAATTCTTTACTTAGCCAAACTGCCAGTCATATGTGAATAGCAAAAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTTAGCCAAACTGCCAGTCATATGTGAATAGCAAAAAGAT  50

seq1  CATTTTTAAAACTCAGAATTCTTGGGGACAGCAAGATAGCTTAGCAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAAACTCAGAATTCTTGGGGACAGCAAGATAGCTTAGCAGTTA  100

seq1  AAGGGACCACCAAGGCTTGGTGACTTGTTCTCAGAAGGAGAGGACTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACCACCAAGGCTTGGTGACTTGTTCTCAGAAGGAGAGGACTGACT  150

seq1  CCTGAAAGTTGTCTTCAAATTTACACTTATATGGAGGGTCTTACCCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGTTGTCTTCAAATTTACACTTATATGGAGGGTCTTACCCTCAT  200

seq1  AGAAAGTACACACATACAATATTTTTTAAGAGATGAAGTACTTAGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTACACACATACAATATTTTTTAAGAGATGAAGTACTTAGAAGGA  250

seq1  AAGTAAGGCAACTGAGTGGATGTGTGTGGGCGATTTTTTTTTAAGATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGCAACTGAGTGGATGTGTGTGGGCGATTTTTTTTTAAGATTTA  300

seq1  TTTATTTTATTTATATGAGTATACTGTTCCTATCTTCAGACACAACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATTTATATGAGTATACTGTTCCTATCTTCAGACACAACAGAA  350

seq1  GAGGGCATTGGATCCCATTTGTAGATGGTTGTGAGCCACCATGTGGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCATTGGATCCCATTTGTAGATGGTTGTGAGCCACCATGTGGTTGC  400

seq1  TGGGAATTGAACTCAGGACCTCAGGAAGAGCAGCCAGTGCTCTTAACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTGAACTCAGGACCTCAGGAAGAGCAGCCAGTGCTCTTAACCAC  450

seq1  TGAGCCATCTTTCCAGCCCCTGAGTGTGGACTTTTTAGAGACAGTTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTTTCCAGCCCCTGAGTGTGGACTTTTTAGAGACAGTTTCCA  500

seq1  TGACCCTGGTTTGTTTTGTTTTGTTTTAAGTAGCTTAAACTTTCTATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGGTTTGTTTTGTTTTGTTTTAAGTAGCTTAAACTTTCTATACT  550

seq1  TTATGTACCTTTTCTTATGAATCTACACAGGATGTATGTTATCAAGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACCTTTTCTTATGAATCTACACAGGATGTATGTTATCAAGATGT  600

seq1  GTGAAAATAAAAAAGAAGCATATATTGGTTCTAGGGATCAAGACATCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATAAAAAAGAAGCATATATTGGTTCTAGGGATCAAGACATCCAA  650

seq1  CCCAACAAAGAAGCAGAGTCTCGCCAATATAATGAAAAGTTAGGCGATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAAAGAAGCAGAGTCTCGCCAATATAATGAAAAGTTAGGCGATTC  700

seq1  CTTGGGTGATACCTGTTGCCAGTTCAGAAACTTACAGTCAGGAGTTTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTGATACCTGTTGCCAGTTCAGAAACTTACAGTCAGGAGTTTGGG  750

seq1  GAGCTGTGTCACCAAAATGATGCAAATCTAGACCTAGCTCAGTGTATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGTCACCAAAATGATGCAAATCTAGACCTAGCTCAGTGTATCCT  800

seq1  GCTTGTCTAGCATGCGCATTATTCTGGGTCCCATCACTAGTAATGCAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTAGCATGCGCATTATTCTGGGTCCCATCACTAGTAATGCAATA  850

seq1  AATAATGCATGAATGAGCAAATAAATAAGACTTGAGGTAGAATTAATGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCATGAATGAGCAAATAAATAAGACTTGAGGTAGAATTAATGAT  900

seq1  TTGCCATAAATATATAATAATTAAGTTAGTATATAAAATTATTTTGTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATAAATATATAATAATTAAGTTAGTATATAAAATTATTTTGTTTT  950

seq1  TCACTTGTTTAAAATTATGTTTTAGAAATTCTGTGTCTGTATGTATATAT  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCACTTGTTTAAAATTATG-TTTAGAAATTCTGTGTCTGTATGTATATAT  999

seq1  ATCACGTATTAGGGTGCCCAAAGAGGACAGAAAAGAGCACAGAATCCCCG  1050
      ||||||   || ||||||| |||| ||||| ||||||||||  || ||||
seq2  ATCACGGTATA-GGTGCCC-AAGA-GACAG-AAAGAGCACAAGAT-CCCG  1044

seq1  GAATTAGAGTTAAATGCAGCTGTGAACTACTTGATATGGGTGGGTGC-TG  1099
      ||  |||||||||||||||||||| |||||||||||||||| ||||| ||
seq2  GA--TAGAGTTAAATGCAGCTGTG-ACTACTTGATATGGGTTGGTGCTTG  1091

seq1  GGGACTGAACTTGGGTTCATAGGAG-TAGCAG-TAAGTGCTCTTAACTGC  1147
      |||||||||||  ||| || | ||| |||||| ||||||||| |||||||
seq2  GGGACTGAACT--GGTCCA-ATGAGTTAGCAGTTAAGTGCTC-TAACTGC  1137

seq1  TGAGCCCTCCCTCCAGATAACCTTTTGGGGTTTTGAAACAGAACTTTATA  1197
      ||| |    ||||||||||||  |||||||||     |||||||||||||
seq2  TGAAC---TCCTCCAGATAAC--TTTGGGGTT----GACAGAACTTTATA  1178

seq1  TAG  1200
      |||
seq2  TAG  1181