BAC Information

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BAC

Clone NameB6Ng01-226E15
Chromosome9 (Build37)
Map Location 108,088,003 - 108,242,139
singlet/doubletdoublet
Overlap geneBsn, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, LOC100042108
Downstream geneUsp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226E15.bB6Ng01-226E15.g
ACCGA040268GA040269
length1,0711,150
definitionB6Ng01-226E15.b B6Ng01-226E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,088,003 - 108,089,076)(108,240,996 - 108,242,139)
sequence
gaattccaggctagctaggctgcaaaataagactctgtctccaaaataga
aaaaaaaaaaaaaaaagcaagccactgacagcatcctgacagccccactg
gtgctggggacaatgtcacaaagctgccctctccaggtaagattgacaat
gtcactattctaaaggaaggtcacttcaattcatacctgtactcccagaa
aactcagccactggggccagacaaggcttctaaatgacaaatgacggtta
tttccaaatctggcaattccacctatcgctctgccttcacaggttcactg
tagactgctagtccacggctatcagctaatgcgggggacctggattcaga
cactgtgcctgatgaatccgttttgagaaaagaactccacgtggttcgtg
ggcactctcaccttccagcaaatgataagggttcctgtcatgtttgcctc
aagacttctccatgtcgtatgaactaaaagggaactgtggcttttgatgg
gcatttagagagagatgtctcagctggcttgtccctgtctctctccgagt
ctcttgcattcagtctctttgctcactgtctctgccaaggtagaccacat
tcctcttcccgcccctacccctgaattccagtgattttcccataatgttt
tgtgtgtctctctcccttgaaacctaaatgtgtctttctaatcttcctac
ttgaaaacccttccatatgtagacactaggctgcccagtctttccttgag
attatccacgatgtgactcttcaagagggacctaaccaaccagactgagt
gatagtgggtagggacctaatgggttttcttccatactgtccatgtagcc
aaatccagtacttgttctcagtagctaagatacctcagctaatttattga
agatcaatttgcacatgacaaaacatttacacgttctttcagctgatgtg
gcgagatgatgtgggcgagatgtgtgggctgccacggatttatgtgggcc
tttgtgcattttaaagcagttgcttaaattatttgtggtggggtgaatgt
tgctaaatctacgtacacagt
gaattcagaatctcttcattcttgccattctcctagggaagacaaaggca
tttatttatgtgctaggatttcggaaagaatgtgctttttaactgcaaaa
cagaggtttcccgatgagtcaccaggaagttgccctccttgtataaccga
ggataggcctgcattccagctgtagtaccagaggagaaagtaagcggtgt
cccgcccgtgggagcctagagcccaaggccacccatctcgccccatatac
ctggtgtccgaactgattgcacgggaaaccgagcaccaccagtccacgag
gtcccagacgcttctgcagatcgttcatctcggtgtagtcccggatcgtg
gtgcctcagagagacgcgacattctcaatgagcagcaccttgccccgcag
ggagcccaggctcacaggctccccgcccgtcagcgggcgcgcggagaagg
catacacggtggactgtgccgccgcggagagccgagcagcacacatactg
gagatgttgggactcaaacgtggaatccgtactagcgctcacagggccct
gcacctccttttaactggatggtgctgagatcacgtggcatcgctttctt
tccggctggcagccagctctaagtctcagggtcccgccttatccggcctc
taccctccccccatcgaggaacagggaagagggtgcggccgggctaaagc
gcctggaggtgcctagggcgggtctggtctagctcctgtagcactagtct
ggaaggaagctgcttgcttaggcggggatcttccagctctgtcttactca
accgtttcttaattagtctagagtcccgcctaggaagatggcctctggca
ataacaacggctaaagcagctcacgcacagctcccttatattgtgtactt
ttacccacacgtttctagtcataaggtatagggttttaaaaacataagtt
aattacaccttatgtttaattaaatcgaaggaggcatgcatgttgaggtc
agagttggttcctctccttccaccttcggtgatattggaatttgaactca
agagggagcctgcgttcgccatcagtgtcagtgttttgttttctgaagaa
caaggtctcttacgagcctggactcgccctggaactccagtgcaatgttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108088003_108089076
seq2: B6Ng01-226E15.b_43_1113

seq1  GAATTCCAGGCTAGCTAGGCTGCAAAATAAGACTCTGTCTCCAAAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTAGCTAGGCTGCAAAATAAGACTCTGTCTCCAAAATAGA  50

seq1  AAAAAAAAAAAAAAAAGCAAGCCACTGACAGCATCCTGACAGCCCCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAGCAAGCCACTGACAGCATCCTGACAGCCCCACTG  100

seq1  GTGCTGGGGACAATGTCACAAAGCTGCCCTCTCCAGGTAAGATTGACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGGACAATGTCACAAAGCTGCCCTCTCCAGGTAAGATTGACAAT  150

seq1  GTCACTATTCTAAAGGAAGGTCACTTCAATTCATACCTGTACTCCCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTATTCTAAAGGAAGGTCACTTCAATTCATACCTGTACTCCCAGAA  200

seq1  AACTCAGCCACTGGGGCCAGACAAGGCTTCTAAATGACAAATGACGGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGCCACTGGGGCCAGACAAGGCTTCTAAATGACAAATGACGGTTA  250

seq1  TTTCCAAATCTGGCAATTCCACCTATCGCTCTGCCTTCACAGGTTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAATCTGGCAATTCCACCTATCGCTCTGCCTTCACAGGTTCACTG  300

seq1  TAGACTGCTAGTCCACGGCTATCAGCTAATGCGGGGGACCTGGATTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGCTAGTCCACGGCTATCAGCTAATGCGGGGGACCTGGATTCAGA  350

seq1  CACTGTGCCTGATGAATCCGTTTTGAGAAAAGAACTCCACGTGGTTCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCCTGATGAATCCGTTTTGAGAAAAGAACTCCACGTGGTTCGTG  400

seq1  GGCACTCTCACCTTCCAGCAAATGATAAGGGTTCCTGTCATGTTTGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCTCACCTTCCAGCAAATGATAAGGGTTCCTGTCATGTTTGCCTC  450

seq1  AAGACTTCTCCATGTCGTATGAACTAAAAGGGAACTGTGGCTTTTGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTCTCCATGTCGTATGAACTAAAAGGGAACTGTGGCTTTTGATGG  500

seq1  GCATTTAGAGAGAGATGTCTCAGCTGGCTTGTCCCTGTCTCTCTCCGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGAGAGAGATGTCTCAGCTGGCTTGTCCCTGTCTCTCTCCGAGT  550

seq1  CTCTTGCATTCAGTCTCTTTGCTCACTGTCTCTGCCAAGGTAGACCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCATTCAGTCTCTTTGCTCACTGTCTCTGCCAAGGTAGACCACAT  600

seq1  TCCTCTTCCCGCCCCTACCCCTGAATTCCAGTGATTTTCCCATAATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCCGCCCCTACCCCTGAATTCCAGTGATTTTCCCATAATGTTT  650

seq1  TGTGTGTCTCTCTCCCTTGAAACCTAAATGTGTCTTTCTAATCTTCCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTCTCTCCCTTGAAACCTAAATGTGTCTTTCTAATCTTCCTAC  700

seq1  TTGAAAACCCTTCCATATGTAGACACTAGGCTGCCCAGTCTTTCCTTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACCCTTCCATATGTAGACACTAGGCTGCCCAGTCTTTCCTTGAG  750

seq1  ATTATCCACGATGTGACTCTTCAAGAGGGACCTAACCAACCAGACTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCACGATGTGACTCTTCAAGAGGGACCTAACCAACCAGACTGAGT  800

seq1  GCTAGTGGGTAGGGACCTAATGGGTTTTCTTCCATACTGTCCATGTAGCC  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGGGTAGGGACCTAATGGGTTTTCTTCCATACTGTCCATGTAGCC  850

seq1  AAATCCAGTACTTGTTCTCAGTAGCTAAGATACCTCAGCTAATTTATTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGTACTTGTTCTCAGTAGCTAAGATACCTCAGCTAATTTATTGA  900

seq1  AGATCAATTTGCACATGACAAAACATTTACACGTTCTTTCAGCTGATGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGATCAATTTGCACATGACAAAACATTTACACGTTCTTTCAGCTGATGT-  949

seq1  GGCGAGATGATGTGGGCGAGATGTGTGGGCTGCCACGGATTTATGTGGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGCGAGATGATGTGGGCGAGATGTGTGGGCTGCCACGGATTTATGTGGG-  998

seq1  CCTTTGTGCAATTTTAAAGCAGTTGCTTAAAATTTATTTGTG--TGTGTG  1048
      ||||||||| |||||||||||||||||||||  |||||||||   | |||
seq2  CCTTTGTGC-ATTTTAAAGCAGTTGCTTAAA--TTATTTGTGGTGGGGTG  1045

seq1  AATGTGCCTAAATCTACGTACACAGT  1074
      |||||  |||||||||||||||||||
seq2  AATGTTGCTAAATCTACGTACACAGT  1071

seq1: chr9_108240996_108242139
seq2: B6Ng01-226E15.g_69_1218 (reverse)

seq1  AAACA-TGCACTTGGAGTTCCA-GGCGAGCCAGGGCTCTGTAGAGACCTT  48
      ||||| ||||| |||||||||| |||||| |  |||||   |||||||||
seq2  AAACATTGCAC-TGGAGTTCCAGGGCGAGTCCAGGCTCGTAAGAGACCTT  49

seq1  GT--CTCAG-AAACAAAACACTGGCCACCTGAT-GCG-ACGCA-GCT-CC  91
      ||   |||| ||||||||||||| |   ||||| ||| ||||| ||| ||
seq2  GTTCTTCAGAAAACAAAACACTGAC--ACTGATGGCGAACGCAGGCTCCC  97

seq1  TCTTGAGTTCAATTCCCAAATTATCACCGA--GTGGAAGGAGA-GAACCA  138
      |||||||||||| | ||||  |||||||||  ||||||||||| ||||||
seq2  TCTTGAGTTCAAATTCCAA--TATCACCGAAGGTGGAAGGAGAGGAACCA  145

seq1  ACTCTGACCTCAACATGCATG-CTCCTTCGATTTAATTAAACAATAAGTG  187
      ||||||||||||||||||||| |||||||||||||||||||||  | |||
seq2  ACTCTGACCTCAACATGCATGCCTCCTTCGATTTAATTAAACATAAGGTG  195

seq1  TAATTAAACTTATGTTTTTAAAACCCTATAACCTTATGACTAGAAACGTG  237
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAATT-AACTTATGTTTTTAAAACCCTAT-ACCTTATGACTAGAAACGTG  243

seq1  TGGGTAAAGTTACACAATATAAGGGAGCTGTGCGTGAGCTGCTTTAGCCG  287
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAAGTACACAATATAAGGGAGCTGTGCGTGAGCTGCTTTAGCCG  293

seq1  TTGTTATTGCCAGAGGCCATCTTCCTAGGCGGGACTCTAGACTAATTAAG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTGCCAGAGGCCATCTTCCTAGGCGGGACTCTAGACTAATTAAG  343

seq1  AAACGGTTGAGTAAGACAGAGCTGGAAGATCCCCGCCTAAGCAAGCAGCT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGTTGAGTAAGACAGAGCTGGAAGATCCCCGCCTAAGCAAGCAGCT  393

seq1  TCCTTCCAGACTAGTGCTACAGGAGCTAGACCAGACCCGCCCTAGGCACC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCAGACTAGTGCTACAGGAGCTAGACCAGACCCGCCCTAGGCACC  443

seq1  TCCAGGCGCTTTAGCCCGGCCGCACCCTCTTCCCTGTTCCTCGATGGGGG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCGCTTTAGCCCGGCCGCACCCTCTTCCCTGTTCCTCGATGGGGG  493

seq1  GAGGGTAGAGGCCGGATAAGGCGGGACCCTGAGACTTAGAGCTGGCTGCC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAGAGGCCGGATAAGGCGGGACCCTGAGACTTAGAGCTGGCTGCC  543

seq1  AGCCGGAAAGAAAGCGATGCCACGTGATCTCAGCACCATCCAGTTAAAAG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGAAAGAAAGCGATGCCACGTGATCTCAGCACCATCCAGTTAAAAG  593

seq1  GAGGTGCAGGGCCCTGTGAGCGCTAGTACGGATTCCACGTTTGAGTCCCA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCAGGGCCCTGTGAGCGCTAGTACGGATTCCACGTTTGAGTCCCA  643

seq1  ACATCTCCAGTATGTGTGCTGCTCGGCTCTCCGCGGCGGCACAGTCCACC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCCAGTATGTGTGCTGCTCGGCTCTCCGCGGCGGCACAGTCCACC  693

seq1  GTGTATGCCTTCTCCGCGCGCCCGCTGACGGGCGGGGAGCCTGTGAGCCT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGCCTTCTCCGCGCGCCCGCTGACGGGCGGGGAGCCTGTGAGCCT  743

seq1  GGGCTCCCTGCGGGGCAAGGTGCTGCTCATTGAGAATGTCGCGTCTCTCT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCCTGCGGGGCAAGGTGCTGCTCATTGAGAATGTCGCGTCTCTCT  793

seq1  GAGGCACCACGATCCGGGACTACACCGAGATGAACGATCTGCAGAAGCGT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACCACGATCCGGGACTACACCGAGATGAACGATCTGCAGAAGCGT  843

seq1  CTGGGACCTCGTGGACTGGTGGTGCTCGGTTTCCCGTGCAATCAGTTCGG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACCTCGTGGACTGGTGGTGCTCGGTTTCCCGTGCAATCAGTTCGG  893

seq1  ACACCAGGTATATGGGGCGAGATGGGTGGCCTTGGGCTCTAGGCTCCCAC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGTATATGGGGCGAGATGGGTGGCCTTGGGCTCTAGGCTCCCAC  943

seq1  GGGCGGGACACCGCTTACTTTCTCCTCTGGTACTACAGCTGGAATGCAGG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGGACACCGCTTACTTTCTCCTCTGGTACTACAGCTGGAATGCAGG  993

seq1  CCTATCCTCGGTTATACAAGGAGGGCAACTTCCTGGTGACTCATCGGGAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCTCGGTTATACAAGGAGGGCAACTTCCTGGTGACTCATCGGGAA  1043

seq1  ACCTCTGTTTTGCAGTTAAAAAGCACATTCTTTCCGAAATCCTAGCACAT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGTTTTGCAGTTAAAAAGCACATTCTTTCCGAAATCCTAGCACAT  1093

seq1  AAATAAATGCCTTTGTCTTCCCTAGGAGAATGGCAAGAATGAAGAGATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGCCTTTGTCTTCCCTAGGAGAATGGCAAGAATGAAGAGATTC  1143

seq1  TGAATTC  1144
      |||||||
seq2  TGAATTC  1150