BAC Information

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BAC

Clone NameB6Ng01-226F10
Chromosome9 (Build37)
Map Location 75,783,356 - 75,930,546
singlet/doubletdoublet
Overlap geneEG620071, Hmgcll1
Upstream geneBC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5
Downstream geneGfral, Hcrtr2, C530008M07Rik, Tinag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226F10.bB6Ng01-226F10.g
ACCGA040306GA040307
length1541,101
definitionB6Ng01-226F10.b B6Ng01-226F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,930,393 - 75,930,546)(75,783,356 - 75,784,472)
sequence
ataaaatgtattaggccagcataaaggagtctgcagcaaggttgctgatt
gtgaatttgtaatacttctaatctgtctgtgaggttccaacagcactctc
atctttataatgttaaaaagagggggaggacggagaggaggagggagagg
agga
gaattccttcagatgacagataggcacctctaacctggcctctctctacc
tgtccagccttatgtggcaccatgatccttcatctcccaccactgagatt
atatagtcccataagaaattgtattaattgttctcattgtcagagaacaa
tttatatatttataaaatatataaagttaattggtgtagtttttatcatc
tgatttttaaattcacatttactctaacagaaggtaaggtacaaaatctc
tgtaccatggactctgtatctaaatggcacaactagccaaggctggccct
ttcagggaaacttctctcaagtatttttaaacatgtaggttatcattacc
tgtaaaatttacactctgaaattaatttcaaactttctcctggatcagta
ctgacacatatatctggggattatacatctcaaataaatatcagagagtt
tgaaaaatttgcacaaattttaattaagaaaaattccaaggtgcaaacta
atctatgcacagtcactcatggatttatggttagggagagcttgtagaaa
gacgcctgcttctggaaagagtatactggtgagggaacagacacgaactg
tgagtgagggcatcaggcagctcagaattggatgagaagaggttttggaa
aagtctaggctgaggaaacttttagtatggctatgaagtaatgtgttttc
ataatggagatgtccagagcttcatagcttttaacctaggcaataataaa
caggatgttatgatggcttggtactaacacagtagttgaaaacaaaaaca
gagggaaaaattactaaagtttcagagtttgggtgtttgcatttttaaaa
gtagttaatcatttggattatgaaaacagcacactcattatgccttaaac
gggagtaagattcttaatgtgaatgaagtttatgggatataagatcggaa
ttcccttgaaatatcaaccattggatcttatttcatcataggagatttat
aagacagcacgtgtattctgctatgtttttctgccatttttatactagac
ttagcatatgatagctctgtttcttaatcaaaaggcttctctattgtgta
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_75930393_75930546
seq2: B6Ng01-226F10.b_51_204 (reverse)

seq1  TCCTCCTCTCCCTCCTCCTCTCCGTCCTCCCCCTCTTTTTAACATTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTCCCTCCTCCTCTCCGTCCTCCCCCTCTTTTTAACATTATAA  50

seq1  AGATGAGAGTGCTGTTGGAACCTCACAGACAGATTAGAAGTATTACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGAGTGCTGTTGGAACCTCACAGACAGATTAGAAGTATTACAAAT  100

seq1  TCACAATCAGCAACCTTGCTGCAGACTCCTTTATGCTGGCCTAATACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCAGCAACCTTGCTGCAGACTCCTTTATGCTGGCCTAATACATT  150

seq1  TTAT  154
      ||||
seq2  TTAT  154

seq1: chr9_75783356_75784472
seq2: B6Ng01-226F10.g_66_1166

seq1  GAATTCCTTCAGATGACAGATAGGCACCTCTAACCTGGCCTCTCTCTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGATGACAGATAGGCACCTCTAACCTGGCCTCTCTCTACC  50

seq1  TGTCCAGCCTTATGTGGCACCATGATCCTTCATCTCCCACCACTGAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCCTTATGTGGCACCATGATCCTTCATCTCCCACCACTGAGATT  100

seq1  ATATAGTCCCATAAGAAATTGTATTAATTGTTCTCATTGTCAGAGAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTCCCATAAGAAATTGTATTAATTGTTCTCATTGTCAGAGAACAA  150

seq1  TTTATATATTTATAAAATATATAAAGTTAATTGGTGTAGTTTTTATCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATTTATAAAATATATAAAGTTAATTGGTGTAGTTTTTATCATC  200

seq1  TGATTTTTAAATTCACATTTACTCTAACAGAAGGTAAGGTACAAAATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTAAATTCACATTTACTCTAACAGAAGGTAAGGTACAAAATCTC  250

seq1  TGTACCATGGACTCTGTATCTAAATGGCACAACTAGCCAAGGCTGGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCATGGACTCTGTATCTAAATGGCACAACTAGCCAAGGCTGGCCCT  300

seq1  TTCAGGGAAACTTCTCTCAAGTATTTTTAAACATGTAGGTTATCATTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGAAACTTCTCTCAAGTATTTTTAAACATGTAGGTTATCATTACC  350

seq1  TGTAAAATTTACACTCTGAAATTAATTTCAAACTTTCTCCTGGATCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATTTACACTCTGAAATTAATTTCAAACTTTCTCCTGGATCAGTA  400

seq1  CTGACACATATATCTGGGGATTATACATCTCAAATAAATATCAGAGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACATATATCTGGGGATTATACATCTCAAATAAATATCAGAGAGTT  450

seq1  TGAAAAATTTGCACAAATTTTAATTAAGAAAAATTCCAAGGTGCAAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTTGCACAAATTTTAATTAAGAAAAATTCCAAGGTGCAAACTA  500

seq1  ATCTATGCACAGTCACTCATGGATTTATGGTTAGGGAGAGCTTGTAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGCACAGTCACTCATGGATTTATGGTTAGGGAGAGCTTGTAGAAA  550

seq1  GACGCCTGCTTCTGGAAAGAGTATACTGGTGAGGGAACAGACACGAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCTGCTTCTGGAAAGAGTATACTGGTGAGGGAACAGACACGAACTG  600

seq1  TGAGTGAGGGCATCAGGCAGCTCAGAATTGGATGAGAAGAGGTTTTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGGGCATCAGGCAGCTCAGAATTGGATGAGAAGAGGTTTTGGAA  650

seq1  AAGTCTAGGCTGAGGAAACTTTTAGTATGGCTATGAAGTAATGTGTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAGGCTGAGGAAACTTTTAGTATGGCTATGAAGTAATGTGTTTTC  700

seq1  ATAATGGAGATGTCCAGAGCTTCATAGCTTTTAACCTAGGCAATAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGAGATGTCCAGAGCTTCATAGCTTTTAACCTAGGCAATAATAAA  750

seq1  CAGGATGTTATGATGGCTTGGTACTAACACAGTAGTTGAAAACAAAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGTTATGATGGCTTGGTACTAACACAGTAGTTGAAAACAAAAACA  800

seq1  GAGGGAAAAATTACTAAAGTTTCAGAGTTTGGGTGTTTGCATTTTTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAAATTACTAAAGTTTCAGAGTTTGGGTGTTTGCATTTTTAAAA  850

seq1  GTAG-TAATCATTTGGA-TATGAAAACAGCACACTCATTATGCCTTAAAC  898
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTAGTTAATCATTTGGATTATGAAAACAGCACACTCATTATGCCTTAAAC  900

seq1  GGGAGTAAAGATTCTTAATGTGAATGAAGTTTATGGAATAATAAGATCGG  948
      |||||| ||||||||||||||||||||||||||||| || ||||||||||
seq2  GGGAGT-AAGATTCTTAATGTGAATGAAGTTTATGGGAT-ATAAGATCGG  948

seq1  AATTCCCTGAAATTATCAACCATTTGATCTTTATTTTCATCATAGGAGAT  998
      ||||||||  || ||||||||||| ||||||   ||||||||||||||||
seq2  AATTCCCTTGAAATATCAACCATTGGATCTT--ATTTCATCATAGGAGAT  996

seq1  TTAT-AGACAGCAGGTGTAATTCTGCTATG-TTTTCTGGCAGTTTTATAC  1046
      |||| |||||||| |||| ||||||||||| ||||||| || ||||||| 
seq2  TTATAAGACAGCACGTGT-ATTCTGCTATGTTTTTCTGCCATTTTTATA-  1044

seq1  CTAGAACTTTAAGCATAATGATAGCTCCTGTTTTTTCCTTTTAAATACAA  1096
      |||| ||||  ||||| ||||||||| |||||| ||       ||| |||
seq2  CTAG-ACTT--AGCAT-ATGATAGCT-CTGTTTCTT-------AAT-CAA  1081

seq1  AAGGTTTTCTCTATTGTGTAT  1117
      ||||  |||||||||||||||
seq2  AAGG-CTTCTCTATTGTGTAT  1101