BAC Information

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BAC

Clone NameB6Ng01-226J12
Chromosome9 (Build37)
Map Location 40,539,131 - 40,676,025
singlet/doubletdoublet
Overlap gene9030425E11Rik, LOC100043071, Hspa8
Upstream geneOlfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, LOC100043076
Downstream geneBsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464, EG667566, 6720432D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226J12.bB6Ng01-226J12.g
ACCGA040489GA040490
length1,116985
definitionB6Ng01-226J12.b B6Ng01-226J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,674,893 - 40,676,025)(40,539,131 - 40,540,118)
sequence
gaattccaggacagccaaggctgcttagagagaagttgtctcaaaatcaa
tcaaccaactaatcactcaatagataaataaatacagttaaaacagggaa
aagcattctgtgtgtaacataacaatttagaagccatttttaaaaaacaa
taagattagctgtgttaattttgtataattctacactgcaaaattaatca
taaaaaaggtgagtcacaaaccgaagaaagtatctttaattcattggaca
cctgagtgctttactatgtatacattcctatgagtcactaggaatataaa
ggtgtatatgtgttatgttctgttgtttttgaaacaggggtccttctaca
tatctcaaattggtcttgactcactctcaaaccctcagtcccctgcctca
gttccctaatggctgaggttattaatatatgctaccatacctggatcaag
catacttttgtaatttttatttttaatcacgcacatatgtacatgtgagt
gcaggtatttcaaagactaaatatgatatcaaatcccctggaataacagt
ggctgtgtgtctccaaacatgggcactgaacccaggtcctttggaagagc
agtacgtactcttaacctctgagccatctttgcagacaaaaaagtataat
tttaaaatgaaatatctctctctgtctctgtctctgtctctgtctctctg
tttctctctctctccaaacatttcaaaaatgtaaacaagaataatgttgg
cctgttatgatggcatattcttgtacacccaacatttaagaggctaagac
aggtagactataaatttgaggctaacttgagctacttaaaaaaactcacc
tcaaaaaagaaaggaaggaaggaaactcgaaattaaaataataaagttaa
tttcatgactgagaaaaatcttccatcttttcaaaaaaaatctaccttaa
aaaacaaacaaacaaacaaacaaacatgtaattactttgtgagaggagct
ctctgtgctgtcaatgacattttttttctttttctttttttggttttcga
gacagattcctctgtaaagcccagctgtctgactcacttctgtagacagg
ctgctcaaactcagaa
ggctgctgcaatttgagtctccagggataggaaggcccgcgccctctctg
cagattcttgccaaatcaaacacccagcagatgaccggagcgggaccctg
gagagaccgctggttcttagcagatggccatctccccagcctgtctctta
ctcggaatctttcccggttccttcttctgtgtggggcacaattttgtgag
ctacagaaattgagctttctaatttgattttctagagaaggatttgaata
gaaacgcacatgggactcaggaaggtgggcacagacggttgacttacttg
gtttggaaggaggacaaaccctgacagtctaatttagcagcctgtcacgc
tgggagccaaaagacgttctccagcccgtaagcccagttctttttactgt
aagttactaaaagaaccctttgggtttcacgttgcactcggtatttcttg
aacgcggtatcctgggctgcagccatgaaatgttacactggaggtagaaa
tttactgcagacttcttccacaaccccatacctggtctgcattcctgaaa
tatctgttgccagggaaacggcgatctccctttgcgttcttagtctcatt
aataaaagaattttaaaacggactcagaaggaagctctagaacaatttta
ttattaaagtttgacagaaaaacaacatggcaagtaagctgaaagggaac
aggggaatagcggggaaactaggagtggaagtcagaaagtaagaaagccc
gggtgtcaggaaagcctgttcagatttgggctgctatgaagggaggggct
aaggaaaggggaatccatgtttaaaggaggagccagggttctgagctctc
tgggacattcattgcagtctttagccttgaccacaacatctatagtaaac
aggctttataaacagagttggcggtttttacaggcataacttaatttttt
ttttaaagttcattttaatttttaattgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_40674893_40676025
seq2: B6Ng01-226J12.b_44_1159 (reverse)

seq1  TTCTGAGTTTGAAGCCAGCCTGGTCTACAG-AGTGAGTTCCAGGACAGCT  49
      ||||||||||||   |||||| |||||||| |||||||  || |||||||
seq2  TTCTGAGTTTGA--GCAGCCT-GTCTACAGAAGTGAGT--CA-GACAGCT  44

seq1  GGGGCTTTACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAGAAAAAAGA  99
       ||||||||||||| ||  |||||||| |||||||||||||||||||   
seq2  -GGGCTTTACAGAGGAA-TCTGTCTCG-AAAACCAAAAAAAGAAAAA--G  89

seq1  AAAAAAAATGTCATTTGACAGCCACAAGAGAGCCTCCTCTCCACAAAGTA  149
      ||||||||||||| ||||||| ||| |||||| ||||||| |||||||||
seq2  AAAAAAAATGTCA-TTGACAG-CAC-AGAGAG-CTCCTCT-CACAAAGTA  134

seq1  ATTACATGTTTGTTTGTTTGTTTGTTTGTTTTTTTAAGGTAGATTTTTTT  199
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  ATTACATGTTTGTTTGTTTGTTTGTTTG-TTTTTTAAGGTAGA-TTTTTT  182

seq1  TTGAAAAGATGGAAGATTTTTCTCAGTCATGAAATTAACTTTATTATTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGATGGAAGATTTTTCTCAGTCATGAAATTAACTTTATTATTTT  232

seq1  AATTTCGAGTTTCCTTCCTTCCTTTCTTTTTTGAGGTGAGTTTTTTTAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCGAGTTTCCTTCCTTCCTTTCTTTTTTGAGGTGAGTTTTTTTAAG  282

seq1  TAGCTCAAGTTAGCCTCAAATTTATAGTCTACCTGTCTTAGCCTCTTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAAGTTAGCCTCAAATTTATAGTCTACCTGTCTTAGCCTCTTAAA  332

seq1  TGTTGGGTGTACAAGAATATGCCATCATAACAGGCCAACATTATTCTTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTGTACAAGAATATGCCATCATAACAGGCCAACATTATTCTTGT  382

seq1  TTACATTTTTGAAATGTTTGGAGAGAGAGAGAAACAGAGAGACAGAGACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTTTGAAATGTTTGGAGAGAGAGAGAAACAGAGAGACAGAGACA  432

seq1  GAGACAGAGACAGAGAGAGATATTTCATTTTAAAATTATACTTTTTTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGACAGAGAGAGATATTTCATTTTAAAATTATACTTTTTTGTC  482

seq1  TGCAAAGATGGCTCAGAGGTTAAGAGTACGTACTGCTCTTCCAAAGGACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGATGGCTCAGAGGTTAAGAGTACGTACTGCTCTTCCAAAGGACC  532

seq1  TGGGTTCAGTGCCCATGTTTGGAGACACACAGCCACTGTTATTCCAGGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCAGTGCCCATGTTTGGAGACACACAGCCACTGTTATTCCAGGGG  582

seq1  ATTTGATATCATATTTAGTCTTTGAAATACCTGCACTCACATGTACATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATATCATATTTAGTCTTTGAAATACCTGCACTCACATGTACATAT  632

seq1  GTGCGTGATTAAAAATAAAAATTACAAAAGTATGCTTGATCCAGGTATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGATTAAAAATAAAAATTACAAAAGTATGCTTGATCCAGGTATGG  682

seq1  TAGCATATATTAATAACCTCAGCCATTAGGGAACTGAGGCAGGGGACTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATATTAATAACCTCAGCCATTAGGGAACTGAGGCAGGGGACTGA  732

seq1  GGGTTTGAGAGTGAGTCAAGACCAATTTGAGATATGTAGAAGGACCCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGAGAGTGAGTCAAGACCAATTTGAGATATGTAGAAGGACCCCTG  782

seq1  TTTCAAAAACAACAGAACATAACACATATACACCTTTATATTCCTAGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAACAACAGAACATAACACATATACACCTTTATATTCCTAGTGA  832

seq1  CTCATAGGAATGTATACATAGTAAAGCACTCAGGTGTCCAATGAATTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGGAATGTATACATAGTAAAGCACTCAGGTGTCCAATGAATTAAA  882

seq1  GATACTTTCTTCGGTTTGTGACTCACCTTTTTTATGATTAATTTTGCAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTTCTTCGGTTTGTGACTCACCTTTTTTATGATTAATTTTGCAGT  932

seq1  GTAGAATTATACAAAATTAACACAGCTAATCTTATTGTTTTTTAAAAATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATTATACAAAATTAACACAGCTAATCTTATTGTTTTTTAAAAATG  982

seq1  GCTTCTAAATTGTTATGTTACACACAGAATGCTTTTCCCTGTTTTAACTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAAATTGTTATGTTACACACAGAATGCTTTTCCCTGTTTTAACTG  1032

seq1  TATTTATTTATCTATTGAGTGATTAGTTGGTTGATTGATTTTGAGACAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATCTATTGAGTGATTAGTTGGTTGATTGATTTTGAGACAAC  1082

seq1  TTCTCTCTAAGCAGCCTTGGCTGTCCTGGAATTC  1133
      ||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTAAGCAGCCTTGGCTGTCCTGGAATTC  1116

seq1: chr9_40539131_40540118
seq2: B6Ng01-226J12.g_75_1059

seq1  GGCTGCTGCAATTTGAGTCTCCAGGGATAGGAAGGCCCGCGCCCTCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGCAATTTGAGTCTCCAGGGATAGGAAGGCCCGCGCCCTCTCTG  50

seq1  CAGATTCTTGCCAAATCAAACACCCAGCAGATGACCGGAGCGGGACCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCTTGCCAAATCAAACACCCAGCAGATGACCGGAGCGGGACCCTG  100

seq1  GAGAGACCGCTGGTTCTTAGCAGATGGCCATCTCCCCAGCCTGTCTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCGCTGGTTCTTAGCAGATGGCCATCTCCCCAGCCTGTCTCTTA  150

seq1  CTCGGAATCTTTCCCGGTTCCTTCTTCTGTGTGGGGCACAATTTTGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGAATCTTTCCCGGTTCCTTCTTCTGTGTGGGGCACAATTTTGTGAG  200

seq1  CTACAGAAATTGAGCTTTCTAATTTGATTTTCTAGAGAAGGATTTGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAATTGAGCTTTCTAATTTGATTTTCTAGAGAAGGATTTGAATA  250

seq1  GAAACGCACATGGGACTCAGGAAGGTGGGCACAGACGGTTGACTTACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGCACATGGGACTCAGGAAGGTGGGCACAGACGGTTGACTTACTTG  300

seq1  GTTTGGAAGGAGGACAAACCCTGACAGTCTAATTTAGCAGCCTGTCACGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAAGGAGGACAAACCCTGACAGTCTAATTTAGCAGCCTGTCACGC  350

seq1  TGGGAGCCAAAAGACGTTCTCCAGCCCGTAAGCCCAGTTCTTTTTACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCCAAAAGACGTTCTCCAGCCCGTAAGCCCAGTTCTTTTTACTGT  400

seq1  AAGTTACTAAAAGAACCCTTTGGGTTTCACGTTGCACTCGGTATTTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTAAAAGAACCCTTTGGGTTTCACGTTGCACTCGGTATTTCTTG  450

seq1  AACGCGGTATCCTGGGCTGCAGCCATGAAATGTTACACTGGAGGTAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCGGTATCCTGGGCTGCAGCCATGAAATGTTACACTGGAGGTAGAAA  500

seq1  TTTACTGCAGACTTCTTCCACAACCCCATACCTGGTCTGCATTCCTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGCAGACTTCTTCCACAACCCCATACCTGGTCTGCATTCCTGAAA  550

seq1  TATCTGTTGCCAGGGAAACGGCGATCTCCCTTTGCGTTCTTAGTCTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTGCCAGGGAAACGGCGATCTCCCTTTGCGTTCTTAGTCTCATT  600

seq1  AATAAAAGAATTTTAAAACGGACTCAGAAGGAAGCTCTAGAACAATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGAATTTTAAAACGGACTCAGAAGGAAGCTCTAGAACAATTTTA  650

seq1  TTATTAAAGTTTGACAGAAAAACAACATGGCAAGTAAGCTGAAAGGGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAGTTTGACAGAAAAACAACATGGCAAGTAAGCTGAAAGGGAAC  700

seq1  AGGGGAATAGCGGGGAAACTAGGAGTGGAAGTCAGAAAGTAAGAAAGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATAGCGGGGAAACTAGGAGTGGAAGTCAGAAAGTAAGAAAGCCC  750

seq1  GGGTGTCAGGGAAAGCCTGTTCAGGATTTGGGCTGCTATGAAGGGAGGGG  800
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  GGGTGTCA-GGAAAGCCTGTTCA-GATTTGGGCTGCTATGAAGGGAGGGG  798

seq1  CTAAGGAAAGGGGAATCCATGTTTAAAGGAGGAGCCAGGGTTCTGAGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAAAGGGGAATCCATGTTTAAAGGAGGAGCCAGGGTTCTGAGCTC  848

seq1  TCTGGGACATTCATTGCAGGTCTTTAGCCTTGACCACAACATCTATAGTA  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTGGGACATTCATTGCA-GTCTTTAGCCTTGACCACAACATCTATAGTA  897

seq1  AACAGGCTTTATAAAACAGAGTTGGCGGTTTTTACAGGCATAACTTAA-T  949
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  AACAGGCTTTAT-AAACAGAGTTGGCGGTTTTTACAGGCATAACTTAATT  946

seq1  TTTTTTTTAAAGTTCATTTTATTTTTTAATTGTGTGTGT  988
      ||||||||||||||||||||| |||||||||||||||||
seq2  TTTTTTTTAAAGTTCATTTTAATTTTTAATTGTGTGTGT  985