BAC Information

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BAC

Clone NameB6Ng01-226J17
Chromosome9 (Build37)
Map Location 20,926,720 - 21,048,015
singlet/doubletdoublet
Overlap geneTyk2, Cdc37, Pde4a, Keap1, Edg8
Upstream geneOlfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1
Downstream geneAtg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226J17.bB6Ng01-226J17.g
ACCGA040499GA040500
length795798
definitionB6Ng01-226J17.b B6Ng01-226J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,047,221 - 21,048,015)(20,926,720 - 20,927,517)
sequence
gaattctaaacaaaggagggactctcctggattcagacctccacaggtac
cctgtgactaccaaagttcaaggggaatggctaaaagatgaagggataaa
ggagagcggggctccaagaatgctcagaaccaggtgatgtctagataaga
gtgtgctaagggctggcaggagtagtggctggctacagaggaaacagagc
tgtggacaaaggtaagcctaggtctggaaatttggctctggagactgtca
gatatcagctgccaaacttccagagtgtggacaggttcttcatacaaatt
acaaccacaataaaaacaattcaaggagttgtccttactgggatctttca
gaatctattcattcatctattgatttttttttttaattttcccccagaaa
gttgtaactatcctctttaaaagtgtttatttattggggttggagagatg
gctcagcagttaagaacacttgttacccttgcaggggacctgtgttccat
tcccagcacccaagtggtgattctggcaacttcagttccaaggttatctg
atgccctcatctgacctctgagggcaccaggcatgcacatggtacaaaga
ttgaatgcaggcaaaactctcatacaaacaagctaaataaatcttttaaa
atgtttaaaattgtttatttattcattgtttattttgagagagacactca
ctatgcagcctcagatggcctggaactcactaggtaaaccaggctggcct
ggaacttctgagtgctaatttgggctgcgcagggtggggttgggg
gaattccaggtgcacaccaccacatctggtccaagcacacgattactgtc
ttgtgttctggggatgaggtctcacgcaccccagactgctcttaacttgc
tgagcagctgacactgtccttgaactcctaactctcttggttctacctcc
cgtgtgttataatcacaggtctaaccaactactcttagctaattttgggg
ttgaggggaataggtcatatacactgtagcccagcctagcctacagcttg
taattctcctgtctcagcatattactggttgctgtgactacaggtctgta
ctacattccagcttccagaaattgcccaggatttgaggatctgagtccca
cagtatcttccagaagtctgaaccgatagggaaccccatttcagtaggat
tggtttttatgggattaattctttcttctctttttgagacagggtctcta
tgtaatcctggctgtcttgtaactcactctatagaacaggctggtcttga
cctcagtgatctacctgcttctgcctcctgggtgctgggatttaatgtgt
gtatgaggggctgagagatggctcagtggttaagaggtctgttaaatctt
aaatcgtctgttcttccagaggtcctcagttcagttcccagcaaccacat
agtatctcacaagcacctatactgggatctcataccctcttctggcatgc
aagtgtaaatgcagatagagccatatacatgaaatgaataaatacaatct
aaattttaaaaatatgtgtattgcccggcggcggtggtggtggtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_21047221_21048015
seq2: B6Ng01-226J17.b_45_839 (reverse)

seq1  CCCCCACCCCACCCTGCGCAGCCCAAATTAGCACTCAGAAGTTCCAGGCC  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACCCCACCCTGCGCAGCCCAAATTAGCACTCAGAAGTTCCAGGCC  50

seq1  AGCCTGGTTTACCTAGTGAGTTCCAGGCCATCTGAGGCTGCATAGTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTTTACCTAGTGAGTTCCAGGCCATCTGAGGCTGCATAGTGAGT  100

seq1  GTCTCTCTCAAAATAAACAATGAATAAATAAACAATTTTAAACATTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTCAAAATAAACAATGAATAAATAAACAATTTTAAACATTTTAA  150

seq1  AAGATTTATTTAGCTTGTTTGTATGAGAGTTTTGCCTGCATTCAATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTTAGCTTGTTTGTATGAGAGTTTTGCCTGCATTCAATCTTT  200

seq1  GTACCATGTGCATGCCTGGTGCCCTCAGAGGTCAGATGAGGGCATCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATGTGCATGCCTGGTGCCCTCAGAGGTCAGATGAGGGCATCAGAT  250

seq1  AACCTTGGAACTGAAGTTGCCAGAATCACCACTTGGGTGCTGGGAATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGGAACTGAAGTTGCCAGAATCACCACTTGGGTGCTGGGAATGGA  300

seq1  ACACAGGTCCCCTGCAAGGGTAACAAGTGTTCTTAACTGCTGAGCCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTCCCCTGCAAGGGTAACAAGTGTTCTTAACTGCTGAGCCATCT  350

seq1  CTCCAACCCCAATAAATAAACACTTTTAAAGAGGATAGTTACAACTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACCCCAATAAATAAACACTTTTAAAGAGGATAGTTACAACTTTCT  400

seq1  GGGGGAAAATTAAAAAAAAAAATCAATAGATGAATGAATAGATTCTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAAATTAAAAAAAAAAATCAATAGATGAATGAATAGATTCTGAAA  450

seq1  GATCCCAGTAAGGACAACTCCTTGAATTGTTTTTATTGTGGTTGTAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGTAAGGACAACTCCTTGAATTGTTTTTATTGTGGTTGTAATTT  500

seq1  GTATGAAGAACCTGTCCACACTCTGGAAGTTTGGCAGCTGATATCTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAGAACCTGTCCACACTCTGGAAGTTTGGCAGCTGATATCTGACA  550

seq1  GTCTCCAGAGCCAAATTTCCAGACCTAGGCTTACCTTTGTCCACAGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGAGCCAAATTTCCAGACCTAGGCTTACCTTTGTCCACAGCTCT  600

seq1  GTTTCCTCTGTAGCCAGCCACTACTCCTGCCAGCCCTTAGCACACTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCTGTAGCCAGCCACTACTCCTGCCAGCCCTTAGCACACTCTTA  650

seq1  TCTAGACATCACCTGGTTCTGAGCATTCTTGGAGCCCCGCTCTCCTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACATCACCTGGTTCTGAGCATTCTTGGAGCCCCGCTCTCCTTTAT  700

seq1  CCCTTCATCTTTTAGCCATTCCCCTTGAACTTTGGTAGTCACAGGGTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCATCTTTTAGCCATTCCCCTTGAACTTTGGTAGTCACAGGGTACC  750

seq1  TGTGGAGGTCTGAATCCAGGAGAGTCCCTCCTTTGTTTAGAATTC  795
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGTCTGAATCCAGGAGAGTCCCTCCTTTGTTTAGAATTC  795

seq1: chr9_20926720_20927517
seq2: B6Ng01-226J17.g_68_865

seq1  GAATTCCAGGTGCACACCACCACATCTGGTCCAAGCACACGATTACTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGCACACCACCACATCTGGTCCAAGCACACGATTACTGTC  50

seq1  TTGTGTTCTGGGGATGAGGTCTCACGCACCCCAGACTGCTCTTAACTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCTGGGGATGAGGTCTCACGCACCCCAGACTGCTCTTAACTTGC  100

seq1  TGAGCAGCTGACACTGTCCTTGAACTCCTAACTCTCTTGGTTCTACCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCTGACACTGTCCTTGAACTCCTAACTCTCTTGGTTCTACCTCC  150

seq1  CGTGTGTTATAATCACAGGTCTAACCAACTACTCTTAGCTAATTTTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTTATAATCACAGGTCTAACCAACTACTCTTAGCTAATTTTGGGG  200

seq1  TTGAGGGGAATAGGTCATATACACTGTAGCCCAGCCTAGCCTACAGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGGAATAGGTCATATACACTGTAGCCCAGCCTAGCCTACAGCTTG  250

seq1  TAATTCTCCTGTCTCAGCATATTACTGGTTGCTGTGACTACAGGTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCCTGTCTCAGCATATTACTGGTTGCTGTGACTACAGGTCTGTA  300

seq1  CTACATTCCAGCTTCCAGAAATTGCCCAGGATTTGAGGATCTGAGTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTCCAGCTTCCAGAAATTGCCCAGGATTTGAGGATCTGAGTCCCA  350

seq1  CAGTATCTTCCAGAAGTCTGAACCGATAGGGAACCCCATTTCAGTAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCTTCCAGAAGTCTGAACCGATAGGGAACCCCATTTCAGTAGGAT  400

seq1  TGGTTTTTATGGGATTAATTCTTTCTTCTCTTTTTGAGACAGGGTCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTATGGGATTAATTCTTTCTTCTCTTTTTGAGACAGGGTCTCTA  450

seq1  TGTAATCCTGGCTGTCTTGTAACTCACTCTATAGAACAGGCTGGTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCTGGCTGTCTTGTAACTCACTCTATAGAACAGGCTGGTCTTGA  500

seq1  CCTCAGTGATCTACCTGCTTCTGCCTCCTGGGTGCTGGGATTTAATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGATCTACCTGCTTCTGCCTCCTGGGTGCTGGGATTTAATGTGT  550

seq1  GTATGAGGGGCTGAGAGATGGCTCAGTGGTTAAGAGGTCTGTTAAATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGGGGCTGAGAGATGGCTCAGTGGTTAAGAGGTCTGTTAAATCTT  600

seq1  AAATCGTCTGTTCTTCCAGAGGTCCTCAGTTCAGTTCCCAGCAACCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGTCTGTTCTTCCAGAGGTCCTCAGTTCAGTTCCCAGCAACCACAT  650

seq1  AGTATCTCACAAGCACCTATACTGGGATCTCATACCCTCTTCTGGCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTCACAAGCACCTATACTGGGATCTCATACCCTCTTCTGGCATGC  700

seq1  AAGTGTAAATGCAGATAGAGCCATATACATGAAATGAATAAATACAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAAATGCAGATAGAGCCATATACATGAAATGAATAAATACAATCT  750

seq1  AAATTTTAAAAATATGTGTATTGCCCGGCGGCGGTGGTGGTGGTGGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAAAATATGTGTATTGCCCGGCGGCGGTGGTGGTGGTGGTG  798