BAC Information

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BAC

Clone NameB6Ng01-226J23
Chromosome9 (Build37)
Map Location 71,120,562 - 71,313,015
singlet/doubletdoublet
Overlap geneAldh1a2
Upstream geneMyo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660
Downstream geneGrinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226J23.bB6Ng01-226J23.g
ACCGA040511GA040512
length7151,118
definitionB6Ng01-226J23.b B6Ng01-226J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,312,301 - 71,313,015)(71,120,562 - 71,121,684)
sequence
gaattctactcaactctccaaatgcttttgttcactttcttccatattcc
aagtactgaagtcatttgaaggtctatactcacagggcttaggcacatca
ccagctaatgctgtgttgccttgagtgctagtttttgtttgtttgtttgt
ttgtttgttaaccatgacttttctttctttttttttttttaagatgtatt
ttatctatgtaagtacattgtccttcttctcggacacaccagaggagggc
atcagatcccattacagatggttgtgagccaccaccatgtggctgctgtg
aatagaactcaggatctctggaagagcagccagtgctcttaaccgctgag
ccatctctccagcccaagtgctggtttttaaagtgtgttctttggctgtc
gaaatggtttagcaggtaaaggtctagtggaataagtctggaaactggcc
ttagatcccctgcataaggtgggaggaaagatctgacctctgcactctgc
tgagataaacggaccctcccccgcccccacccaccattgtgcccacacag
taataataaaagttaaggtaaataaacagtggttcacacgagctcaacct
gaagtggaaatgaatcagttagccagagagcaaaaacagtgctcccaggc
agagttctgggctctctgataggaactgatcaagagtgatggaggttaag
gtgggtggtaggtgg
gaattcttttataagagttgctttggtcatagtgtctcttcacagcaata
gaacattgacaaagatagggaggaagctaggtgaggttgggaaagagaat
caggtagaaggagacctgtaacatgcttggctggtaagagcatgtaccat
agtgagaaccacgctctagtgtgcattgttcagctaactttttccagtgg
agtatatatttgatatttctcaaaggaagcttacattcattcagagggga
gccagttctgtggcttttgaaatatcttcatgtttttctatctgaaatga
cattagtggcaaatgtcaaaggaccttatctagaacatgaaaatcaggtt
gtgactatttacagtaacagtgagcaagccgagggtactcataggcagac
agcaccatcctagcctcctcatcccccgctgcctggtatgtattcatcca
tctattctttttaacttttttttttttttggttacttggaaaccacagaa
tcttataaatcaaacatgtcacttaaaagtatatttgtctatagcttctg
ttaggattgtgccagggagaaggaacctattgacacattacaaaacatct
gcaatgttctgaaacaagaagcttagttgaagtggctgccttccatttta
cttcagcaacagcctttagaaagcaaacagtactcagattaaagataggg
tcggcttctctttatgcagctagatacataagcaatacgtgtaaatattt
aataagtgaatatgaaagtcttcttataacacagagtcaataaacatcct
caacaaagtacgggaaaggcagtttgcattctgcttgatataatgtattt
cttttcattcagttagattagcaaaccatgatttcatcattagtcaacag
atagtagagagaccatcaaagcaagctacaggagagtccagattgatctg
tgccaagccaatgtttgtagctagcagctgtgttacactgatgctattca
cgcagtggggttctcctttcattcccgagtgggttaacactctgtctatg
acgcagaccattcctgctgctggaagtggtgaatcaagtcagctctcttc
ttcctgcttccctcagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_71312301_71313015
seq2: B6Ng01-226J23.b_48_762 (reverse)

seq1  CCACCTACCACCCACCTTAACCTCCATCACTCTTGATCAGTTCCTATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTACCACCCACCTTAACCTCCATCACTCTTGATCAGTTCCTATCAG  50

seq1  AGAGCCCAGAACTCTGCCTGGGAGCACTGTTTTTGCTCTCTGGCTAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCAGAACTCTGCCTGGGAGCACTGTTTTTGCTCTCTGGCTAACTG  100

seq1  ATTCATTTCCACTTCAGGTTGAGCTCGTGTGAACCACTGTTTATTTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTCCACTTCAGGTTGAGCTCGTGTGAACCACTGTTTATTTACCT  150

seq1  TAACTTTTATTATTACTGTGTGGGCACAATGGTGGGTGGGGGCGGGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTATTATTACTGTGTGGGCACAATGGTGGGTGGGGGCGGGGGAG  200

seq1  GGTCCGTTTATCTCAGCAGAGTGCAGAGGTCAGATCTTTCCTCCCACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCGTTTATCTCAGCAGAGTGCAGAGGTCAGATCTTTCCTCCCACCTT  250

seq1  ATGCAGGGGATCTAAGGCCAGTTTCCAGACTTATTCCACTAGACCTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGGGATCTAAGGCCAGTTTCCAGACTTATTCCACTAGACCTTTAC  300

seq1  CTGCTAAACCATTTCGACAGCCAAAGAACACACTTTAAAAACCAGCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAACCATTTCGACAGCCAAAGAACACACTTTAAAAACCAGCACTT  350

seq1  GGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGGCTGCTCTTCCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGGCTGCTCTTCCAGAG  400

seq1  ATCCTGAGTTCTATTCACAGCAGCCACATGGTGGTGGCTCACAACCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAGTTCTATTCACAGCAGCCACATGGTGGTGGCTCACAACCATCT  450

seq1  GTAATGGGATCTGATGCCCTCCTCTGGTGTGTCCGAGAAGAAGGACAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGGATCTGATGCCCTCCTCTGGTGTGTCCGAGAAGAAGGACAATG  500

seq1  TACTTACATAGATAAAATACATCTTAAAAAAAAAAAAAGAAAGAAAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACATAGATAAAATACATCTTAAAAAAAAAAAAAGAAAGAAAAGTC  550

seq1  ATGGTTAACAAACAAACAAACAAACAAACAAAAACTAGCACTCAAGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAACAAACAAACAAACAAACAAACAAAAACTAGCACTCAAGGCAA  600

seq1  CACAGCATTAGCTGGTGATGTGCCTAAGCCCTGTGAGTATAGACCTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATTAGCTGGTGATGTGCCTAAGCCCTGTGAGTATAGACCTTCAA  650

seq1  ATGACTTCAGTACTTGGAATATGGAAGAAAGTGAACAAAAGCATTTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCAGTACTTGGAATATGGAAGAAAGTGAACAAAAGCATTTGGAG  700

seq1  AGTTGAGTAGAATTC  715
      |||||||||||||||
seq2  AGTTGAGTAGAATTC  715

seq1: chr9_71120562_71121684
seq2: B6Ng01-226J23.g_64_1181

seq1  GAATTCTTTTATAAGAGTTGCTTTGGTCATAGTGTCTCTTCACAGCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATAAGAGTTGCTTTGGTCATAGTGTCTCTTCACAGCAATA  50

seq1  GAACATTGACAAAGATAGGGAGGAAGCTAGGTGAGGTTGGGAAAGAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTGACAAAGATAGGGAGGAAGCTAGGTGAGGTTGGGAAAGAGAAT  100

seq1  CAGGTAGAAGGAGACCTGTAACATGCTTGGCTGGTAAGAGCATGTACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGAAGGAGACCTGTAACATGCTTGGCTGGTAAGAGCATGTACCAT  150

seq1  AGTGAGAACCACGCTCTAGTGTGCATTGTTCAGCTAACTTTTTCCAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAACCACGCTCTAGTGTGCATTGTTCAGCTAACTTTTTCCAGTGG  200

seq1  AGTATATATTTGATATTTCTCAAAGGAAGCTTACATTCATTCAGAGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATATTTGATATTTCTCAAAGGAAGCTTACATTCATTCAGAGGGGA  250

seq1  GCCAGTTCTGTGGCTTTTGAAATATCTTCATGTTTTTCTATCTGAAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTCTGTGGCTTTTGAAATATCTTCATGTTTTTCTATCTGAAATGA  300

seq1  CATTAGTGGCAAATGTCAAAGGACCTTATCTAGAACATGAAAATCAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTGGCAAATGTCAAAGGACCTTATCTAGAACATGAAAATCAGGTT  350

seq1  GTGACTATTTACAGTAACAGTGAGCAAGCCGAGGGTACTCATAGGCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTATTTACAGTAACAGTGAGCAAGCCGAGGGTACTCATAGGCAGAC  400

seq1  AGCACCATCCTAGCCTCCTCATCCCCCGCTGCCTGGTATGTATTCATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATCCTAGCCTCCTCATCCCCCGCTGCCTGGTATGTATTCATCCA  450

seq1  TCTATTCTTTTTAACTTTTTTTTTTTTTTGGTTACTTGGAAACCACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCTTTTTAACTTTTTTTTTTTTTTGGTTACTTGGAAACCACAGAA  500

seq1  TCTTATAAATCAAACATGTCACTTAAAAGTATATTTGTCTATAGCTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAAATCAAACATGTCACTTAAAAGTATATTTGTCTATAGCTTCTG  550

seq1  TTAGGATTGTGCCAGGGAGAAGGAACCTATTGACACATTACAAAACATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATTGTGCCAGGGAGAAGGAACCTATTGACACATTACAAAACATCT  600

seq1  GCAATGTTCTGAAACAAGAAGCTTAGTTGAAGTGGCTGCCTTCCATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTTCTGAAACAAGAAGCTTAGTTGAAGTGGCTGCCTTCCATTTTA  650

seq1  CTTCAGCAACAGCCTTTAGAAAGCAAACAGTACTCAGATTAAAGATAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCAACAGCCTTTAGAAAGCAAACAGTACTCAGATTAAAGATAGGG  700

seq1  TCGGCTTCTCTTTATGCAGCTAGATACATAAGCAATACGTGTAAATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTTCTCTTTATGCAGCTAGATACATAAGCAATACGTGTAAATATTT  750

seq1  AATAAGTGAATATGAAAGTCTTCTTATAAACACAGAGTCAATAAACATCC  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATAAGTGAATATGAAAGTCTTCTTAT-AACACAGAGTCAATAAACATCC  799

seq1  TCAACAAAGTACGGG-AAGGCAGTTTGCATTCTGCTTGATATAATGTATT  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCAACAAAGTACGGGAAAGGCAGTTTGCATTCTGCTTGATATAATGTATT  849

seq1  TCTTTTCATTCAGTTAGATTAGCAAACCATGATTTCATCATTAGTCAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTTTTCATTCAGTTAGATTAGCAAACCATGATTTCATCATTAGTCAAC-  898

seq1  AGATAGTAGAGAGACCATCAAAGCAAGCTACAGGAGAGTCCAGATTGATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTAGAGAGACCATCAAAGCAAGCTACAGGAGAGTCCAGATTGATC  948

seq1  TGTGCCAAGCCAATGTTTGTAGCTAGCAGCTGTGTTACCACTGATGCTAA  999
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  TGTGCCAAGCCAATGTTTGTAGCTAGCAGCTGTGTTA-CACTGATGCT-A  996

seq1  TTCACGCAGTGGGGTTCTCCTTTCATTTCCCGAGTGGGGTAACACTCCTG  1049
      ||||||||||||||||||||||||| |||||||||||| ||||||| |||
seq2  TTCACGCAGTGGGGTTCTCCTTTCA-TTCCCGAGTGGGTTAACACT-CTG  1044

seq1  TCCTATGACGCAGACCCATTCCTGCTGCTGG-AGTGGTGAATCAGGTCAG  1098
      | |||||||||||| |||||||||||||||| |||||||||||| |||||
seq2  T-CTATGACGCAGA-CCATTCCTGCTGCTGGAAGTGGTGAATCAAGTCAG  1092

seq1  CTCTC-TCTTCCTGCTCCCCTCAGCC  1123
      ||||| |||||||||| |||||||||
seq2  CTCTCTTCTTCCTGCTTCCCTCAGCC  1118