BAC Information

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BAC

Clone NameB6Ng01-227I15
Chromosome9 (Build37)
Map Location 110,597,433 - 110,598,551
singlet/doubletsinglet
Overlap geneCcdc12
Upstream geneC85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2
Downstream genePthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227I15.bB6Ng01-227I15.g
ACCGA041185GA041186
length8741,125
definitionB6Ng01-227I15.b B6Ng01-227I15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacccaagtctgtaaggggaaagctttgtcctcttctgtaagac
taagcctgccttgctattaagaaaagacctgctctgtcccatggtaagga
gaagcctgcctgctccttctctctctgcagcttcttcttttttcctcttt
ccctctgcattctgcatactgctctcttaattttttaagttgccttatag
tttctaagttattccgctctgcattctccttctaatcttgctctctcctc
ctgctctgatgtagcaatagccttactcccgatgctcttactcccaattg
ccttcctccctcacctttactcccagtgccattcaacataatctttcttg
gtctttggtaccttttctaggagaatagaccacatgtttttttttttccc
aaacatctctctttttttttttttttaacaaaatttcactggaagttcaa
acataaattgaataagacgtttacaacagaaaatgtttacatgcatatcc
attaagagtaattatctggctaaacactcatcatctgcaactaattcaac
aggttcattaaaagttaaaaaacctaattttgtgactaagatattattga
agttttgtatagatcacccagtcagtttttaatcgtttgtccttgcacct
atagtaaattgttagttcccttttatgacctttggttaattattttacac
cctcttggaattagctctcaattgtagatcccttcttgttatctcagaag
caattaactcttgacacttgaaaactggcagagttctcattgcaattttg
acataagaaaggacttaatgacagtcttattataaaagatcttactaatt
ctaatataattttaggaattgggc
gaattcagagggcaggttgtgggtagtagggcccagaggcctgaacctgc
agtgggaaacggtggatgggctgggaagactagacagcaccgcaactcct
gggacctctactcatgagcccccaatcccagttttacacagtgtcagttg
cggtccatcctggagatgatactgagggccttagagaatcagtgtctgag
ttctgggctggatgggacaaggctaagctgtgcctggtgcctcccaaccc
agactctgatagggaggaaaaggtgccctcttctctcctttcttccttcc
cacttctcctttgccctgacctggagactcatccctagccattgtatcac
acactgacacccagctctgaactctctcctgcagatgaccccagggacct
gctgtctgtgagcacctgtgtgctggcagagggtaagatccacctgcccc
agtgccccggcaggtcacttggcaccacttttggaggcccacttaccttg
acactgcacagacacttggctgacggccatttcaattgatttgtatagtt
agatcatcatgcacttaaaaaaaaaattagcaatgggccctggaaaagta
ggacccaagcagatagaatggacttgaggtttgaaagtcacacccagatt
aagggtcagggcctgcaaattattagctctttgcccctagggtaagtcat
gttgcctctttgagctttggtatcttcagctaaccaatcaagaaatgaaa
gaacacttgcttcccctgatggggaatttaggatgtctcccagccatgca
ggacgacactcggaggccctccctcctgacatggttacccacaggcagag
cttgaacctgcctaactagctcttagagaacacatgtgctaactttacaa
ctaggacagtagctggggaaacagcaaggtgggtgcatgggaacagaaat
gagcacatgtgaccacgaggtggaggagcaggagcaggggacagagccgc
aactctgctttagcagatagaatagtgctgggaagaaagctgggaagtgg
ccttcgtttccacagaacagcctgttcaaccagaaacattgcagcaagtg
attgcagctgagagcagtgaagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110597433_110598551
seq2: B6Ng01-227I15.g_68_1192

seq1  GAATTCAGAGGGCAGGTTGTGGGTAGTAGGGCCCAGAGGCCTGAACCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGGCAGGTTGTGGGTAGTAGGGCCCAGAGGCCTGAACCTGC  50

seq1  AGTGGGAAACGGTGGATGGGCTGGGAAGACTAGACAGCACCGCAACTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAACGGTGGATGGGCTGGGAAGACTAGACAGCACCGCAACTCCT  100

seq1  GGGACCTCTACTCATGAGCCCCCAATCCCAGTTTTACACAGTGTCAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTCTACTCATGAGCCCCCAATCCCAGTTTTACACAGTGTCAGTTG  150

seq1  CGGTCCATCCTGGAGATGATACTGAGGGCCTTAGAGAATCAGTGTCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCATCCTGGAGATGATACTGAGGGCCTTAGAGAATCAGTGTCTGAG  200

seq1  TTCTGGGCTGGATGGGACAAGGCTAAGCTGTGCCTGGTGCCTCCCAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCTGGATGGGACAAGGCTAAGCTGTGCCTGGTGCCTCCCAACCC  250

seq1  AGACTCTGATAGGGAGGAAAAGGTGCCCTCTTCTCTCCTTTCTTCCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGATAGGGAGGAAAAGGTGCCCTCTTCTCTCCTTTCTTCCTTCC  300

seq1  CACTTCTCCTTTGCCCTGACCTGGAGACTCATCCCTAGCCATTGTATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCCTTTGCCCTGACCTGGAGACTCATCCCTAGCCATTGTATCAC  350

seq1  ACACTGACACCCAGCTCTGAACTCTCTCCTGCAGATGACCCCAGGGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACACCCAGCTCTGAACTCTCTCCTGCAGATGACCCCAGGGACCT  400

seq1  GCTGTCTGTGAGCACCTGTGTGCTGGCAGAGGGTAAGATCCACCTGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGTGAGCACCTGTGTGCTGGCAGAGGGTAAGATCCACCTGCCCC  450

seq1  AGTGCCCCGGCAGGTCACTTGGCACCACTTTTGGAGGCCCACTTACCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCCGGCAGGTCACTTGGCACCACTTTTGGAGGCCCACTTACCTTG  500

seq1  ACACTGCACAGACACTTGGCTGACGGCCATTTCAATTGATTTGTATAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCACAGACACTTGGCTGACGGCCATTTCAATTGATTTGTATAGTT  550

seq1  AGATCATCATGCACTTAAAAAAAAAATTAGCAATGGGCCCTGGAAAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATCATGCACTTAAAAAAAAAATTAGCAATGGGCCCTGGAAAAGTA  600

seq1  GGACCCAAGCAGATAGAATGGACTTGAGGTTTGAAAGTCACACCCAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAAGCAGATAGAATGGACTTGAGGTTTGAAAGTCACACCCAGATT  650

seq1  AAGGGTCAGGGCCTGCAAATTATTAGCTCTTTGCCCCTAGGGTAAGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCAGGGCCTGCAAATTATTAGCTCTTTGCCCCTAGGGTAAGTCAT  700

seq1  GTTGCCTCTTTGAGCTTTGGTATCTTCAGCTAACCAATCAAGAAATGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTCTTTGAGCTTTGGTATCTTCAGCTAACCAATCAAGAAATGAAA  750

seq1  GAACACTTGCTTCCCCTGATGGGGAATTTAGGATGTCTCCCAGCCATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTGCTTCCCCTGATGGGGAATTTAGGATGTCTCCCAGCCATGCA  800

seq1  GGACGACACTCGGAGGCCCTCCCTCCTGACATGGTTACCCACAGGCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGACACTCGGAGGCCCTCCCTCCTGACATGGTTACCCACAGGCAGAG  850

seq1  CTTGAACCTGCCTAACTAGCTCTTAGAGAACACATGTGCTAACTTTACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACCTGCCTAACTAGCTCTTAGAGAACACATGTGCTAACTTTACAA  900

seq1  CTAGGACAGTAGCTGGGGAAACAGCAAGGTGGGTGCATGGGAACAGAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACAGTAGCTGGGGAAACAGCAAGGTGGGTGCATGGGAACAGAAAT  950

seq1  GAGCACATGTGACCACGAGGTGGAGGAGCAGGAGCAGGGGACAGAGCCGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACATGTGACCACGAGGTGGAGGAGCAGGAGCAGGGGACAGAGCCGC  1000

seq1  -ACTC-GC-TTAGCAGATTAGATAGTGCT-GGAAGAAAGCT-GGAAGTGG  1045
       |||| || |||||||||   |||||||| ||||||||||| ||||||||
seq2  AACTCTGCTTTAGCAGATAGAATAGTGCTGGGAAGAAAGCTGGGAAGTGG  1050

seq1  CC-TCGTTT-CACAG-ACAG-CTGTCCAACCAGAAACATTGCAAGGCCAG  1091
      || |||||| ||||| |||| |||| |||||||||||||||||  || ||
seq2  CCTTCGTTTCCACAGAACAGCCTGTTCAACCAGAAACATTGCA--GCAAG  1098

seq1  GGTATGCAGCTGAGGAGCAGTGGAGCTG  1119
       |  ||||||||| |||||||| |||||
seq2  TGATTGCAGCTGA-GAGCAGTGAAGCTG  1125