BAC Information

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BAC

Clone NameB6Ng01-227J03
Chromosome9 (Build37)
Map Location 79,954,511 - 80,039,969
singlet/doubletdoublet
Overlap geneSenp6, LOC100041249, Myo6
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490
Downstream geneImpg1, EG666534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227J03.bB6Ng01-227J03.g
ACCGA041209GA041210
length1,1431,048
definitionB6Ng01-227J03.b B6Ng01-227J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,954,511 - 79,955,636)(80,038,923 - 80,039,969)
sequence
gaattcctgtttggccttaacttttctctctgggatttagcatccgttgg
tgagtgttaaggggaggggtgttgaacttttcggacagcctcacatggct
cagcctcaaacttccctggattgctgggactgtaggattgcaccatcatc
catagcttcattagtgggtcctgatgagcctgttcctcattcatgcaaca
gttgttgatttttgtctaatggtaattttctgtttttatttattttgcat
tattggtggtacttacaaattgcaggaaaatatttgcatatttaaattat
aagcattttcgggagaggtgtttaagagtctcagatcctagagtggctct
tgtcttctgtagtggtgggtatcagacccagagctttgtgtatgccacgt
aagcactctcccaactgaactacttcagcccaagctgtacccattatgag
aggaatataaaagttatactgagacgctacctcttttctttaattatatc
agaggtaatggagccctccattgtcagccatgtttgtgttaagcaggtag
gtcaatgcctggttataggatactagcagattgaatagaatgctgcatga
aaatcacattcaattttagtatttcctttgaaggctcagtcatgtttcga
tcatagttcctggaatatttttgccttttaaaagaaatcaccgtgatact
aacaaggtgagggcagtggaaaaaaatacttgagtacttatgttagacaa
cctgaatttgatctcatattcttaaaaggtggaaggtgagacttgactcc
aagactgccctccacgtgtgcaccatggtgtgtacatgcctgtactcaaa
cacattatacatgttaccaccaccaccgtcaaatgaaatttaaaatgtaa
ataaaaattaggttcctgacatgtaagaatgatttagttttacatttttt
atgtgtattttattagtgtgtgtgtgtgtgtatagcccaagttgttacat
cccatgttgcaactctaagaggataattcaaccttgtggattggaccttc
ttgacgttccatctcatgaactaggtttattgctcataaagtctattaag
gtgtaaatattgtaggttcgttcatacacacttgggaaatttg

gaattcatttccttggttttcctaaggaaatgctctttaaaaaaacacac
acaccataaaattgtaaatattacttatgaacccagttgaactgctgtaa
tcccagcaatcagaagacagaggcaggcagatctcctttaaggataccct
ggcctacaaagcaagttccaggctagccagggctactttttttttttcct
caataaaataaaattaaaaagtcacataagacactacaaccattccctga
cagagcagggaagatgtccaatggaaactaagagtggcagtaacttattc
taaggtagaaatttccatcctgctgactaaccatgtttatagaagctact
atacgggcagctcagggagagaagcctgcaatggtctctcctagcttgag
tcttacttgttacaataccaacctgctaagagtacagtattttgacacaa
tgttatagaggcaatgcagagactcctggctgctcaaggtgtcagagaag
tggcagttgagtgctgaactttaaacaggacacccatatcacccccttcc
aaggctcaaggaaataggggcagagagaacagaaaagcccaaacacaagg
aaggctgcaaaagctgccttccttccatacagggcgctgccacggcatcc
ataacctccgaacagctgtggcagcacaagaagacgccagtaaatactca
gtcacagcggggagaggctcatggagcctgaggaggcccagaggagcaaa
gggcagtgcagagctgctagaatgaaggaattatccactgccttgagtta
caagttgcctcttgtactttcatgcctatgcttaagcaagtaagtacggt
taaaacccagtgggtcacaaaacaaaaacaaaacaaacaaacaaaaactg
aaaaacggtctgggccatggtgggtgagagcggggaagcagcagaatggg
aagaggatggagaaggcaaggggcgagcatgaccagaacgtagtacgtac
gtatgcacgtatgtattatatgtatgtatgtatggtatggggtgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_79954511_79955636
seq2: B6Ng01-227J03.b_44_1186

seq1  GAATTCCTGTTTGGCCTTAACTTTTCTCTCTGGGATTTAGCATCCGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTTGGCCTTAACTTTTCTCTCTGGGATTTAGCATCCGTTGG  50

seq1  TGAGTGTTAAGGGGAGGGGTGTTGAACTTTTCGGACAGCCTCACATGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTAAGGGGAGGGGTGTTGAACTTTTCGGACAGCCTCACATGGCT  100

seq1  CAGCCTCAAACTTCCCTGGATTGCTGGGACTGTAGGATTGCACCATCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAAACTTCCCTGGATTGCTGGGACTGTAGGATTGCACCATCATC  150

seq1  CATAGCTTCATTAGTGGGTCCTGATGAGCCTGTTCCTCATTCATGCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTTCATTAGTGGGTCCTGATGAGCCTGTTCCTCATTCATGCAACA  200

seq1  GTTGTTGATTTTTGTCTAATGGTAATTTTCTGTTTTTATTTATTTTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGATTTTTGTCTAATGGTAATTTTCTGTTTTTATTTATTTTGCAT  250

seq1  TATTGGTGGTACTTACAAATTGCAGGAAAATATTTGCATATTTAAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTGGTACTTACAAATTGCAGGAAAATATTTGCATATTTAAATTAT  300

seq1  AAGCATTTTCGGGAGAGGTGTTTAAGAGTCTCAGATCCTAGAGTGGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTTCGGGAGAGGTGTTTAAGAGTCTCAGATCCTAGAGTGGCTCT  350

seq1  TGTCTTCTGTAGTGGTGGGTATCAGACCCAGAGCTTTGTGTATGCCACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTGTAGTGGTGGGTATCAGACCCAGAGCTTTGTGTATGCCACGT  400

seq1  AAGCACTCTCCCAACTGAACTACTTCAGCCCAAGCTGTACCCATTATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCTCCCAACTGAACTACTTCAGCCCAAGCTGTACCCATTATGAG  450

seq1  AGGAATATAAAAGTTATACTGAGACGCTACCTCTTTTCTTTAATTATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATAAAAGTTATACTGAGACGCTACCTCTTTTCTTTAATTATATC  500

seq1  AGAGGTAATGGAGCCCTCCATTGTCAGCCATGTTTGTGTTAAGCAGGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAATGGAGCCCTCCATTGTCAGCCATGTTTGTGTTAAGCAGGTAG  550

seq1  GTCAATGCCTGGTTATAGGATACTAGCAGATTGAATAGAATGCTGCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGCCTGGTTATAGGATACTAGCAGATTGAATAGAATGCTGCATGA  600

seq1  AAATCACATTCAATTTTAGTATTTCCTTTGAAGGCTCAGTCATGTTTCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACATTCAATTTTAGTATTTCCTTTGAAGGCTCAGTCATGTTTCGA  650

seq1  TCATAGTTCCTGGAATATTTTTGCCTTTTAAAAGAAATCACCGTGATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTTCCTGGAATATTTTTGCCTTTTAAAAGAAATCACCGTGATACT  700

seq1  AACAAGGTGAGGGCAGTGGAAAAAAATACTTGAGTACTTATGTTAGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTGAGGGCAGTGGAAAAAAATACTTGAGTACTTATGTTAGACAA  750

seq1  CCTGAATTTGATCTCATATTCTT-AAAGGTGGAAGGTGAGACTTGACTCC  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCTGAATTTGATCTCATATTCTTAAAAGGTGGAAGGTGAGACTTGACTCC  800

seq1  AAGACTGCCCTCCACGTGTGCACCATGGTGTGTACATGCCTGTACTCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGCCCTCCACGTGTGCACCATGGTGTGTACATGCCTGTACTCAAA  850

seq1  CACATTATACATGTTACCACCACCACCGTCAAATG-AATTTAAAATGTAA  898
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACATTATACATGTTACCACCACCACCGTCAAATGAAATTTAAAATGTAA  900

seq1  ATAAAAATTAGGTTCCTGACATGTAAG-ATGATTTAGTTTTACATTTTTT  947
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATAAAAATTAGGTTCCTGACATGTAAGAATGATTTAGTTTTACATTTTTT  950

seq1  ATGTGTA-TTTATTAGTGTGTGTGTGTGTGTATAGCCCAAG-TGTTACAT  995
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGTGTATTTTATTAGTGTGTGTGTGTGTGTATAGCCCAAGTTGTTACAT  1000

seq1  CCCATGTGCAAACTCT-AGAAGATAA-TCCACCTTGTGGATT-GAACTTC  1042
      |||||||   |||||| ||| ||||| || |||||||||||| || ||||
seq2  CCCATGTTGCAACTCTAAGAGGATAATTCAACCTTGTGGATTGGACCTTC  1050

seq1  -TGA-GTTCAATCTCATGAACTAAG-TTAATGCTCATAA--GCTATT-AG  1086
       ||| |||| ||||||||||||| | ||| |||||||||   ||||| ||
seq2  TTGACGTTCCATCTCATGAACTAGGTTTATTGCTCATAAAGTCTATTAAG  1100

seq1  GTGTAAATATTTTAGGTTTTGTTAATACACA-TTGG---ATTTG  1126
      ||||||||||| |||| || ||| ||||||| ||||   |||||
seq2  GTGTAAATATTGTAGG-TTCGTTCATACACACTTGGGAAATTTG  1143


seq1: chr9_80038923_80039969
seq2: B6Ng01-227J03.g_64_1111 (reverse)

seq1  --CACACACACATA-CATACATACATACATAT-ATACATACGTGCATACG  46
        ||||| | |||| ||||||||||||||||| |||||||||||||||||
seq2  CTCACAC-CCCATACCATACATACATACATATAATACATACGTGCATACG  49

seq1  TACGTACCTACGTTCTGGTCATGCTCGCCCCTTGCCCTTCTCCATCCTCT  96
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  TACGTA-CTACGTTCTGGTCATGCTCGCCCCTTG-CCTTCTCCATCCTCT  97

seq1  TCCCATTCTGCTGCTTCCCCGCTCTCACCCACCATGGCCCAGACCCTTTT  146
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCCCATTCTGCTGCTTCCCCGCTCTCACCCACCATGGCCCAGACCGTTTT  147

seq1  TCAGTTTTTGTTTGTTTGTTTTGTTTTTGTTTTGTGACCCACTGGGTTTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTTGTTTGTTTGTTTTGTTTTTGTTTTGTGACCCACTGGGTTTT  197

seq1  AACCGTACTTACTTGCTTAAGCATAGGCATGAAAGTACAAGAGGCAACTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTACTTACTTGCTTAAGCATAGGCATGAAAGTACAAGAGGCAACTT  247

seq1  GTAACTCAAGGCAGTGGATAATTCCTTCATTCTAGCAGCTCTGCACTGCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCAAGGCAGTGGATAATTCCTTCATTCTAGCAGCTCTGCACTGCC  297

seq1  CTTTGCTCCTCTGGGCCTCCTCAGGCTCCATGAGCCTCTCCCCGCTGTGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCCTCTGGGCCTCCTCAGGCTCCATGAGCCTCTCCCCGCTGTGA  347

seq1  CTGAGTATTTACTGGCGTCTTCTTGTGCTGCCACAGCTGTTCGGAGGTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTATTTACTGGCGTCTTCTTGTGCTGCCACAGCTGTTCGGAGGTTA  397

seq1  TGGATGCCGTGGCAGCGCCCTGTATGGAAGGAAGGCAGCTTTTGCAGCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCCGTGGCAGCGCCCTGTATGGAAGGAAGGCAGCTTTTGCAGCCT  447

seq1  TCCTTGTGTTTGGGCTTTTCTGTTCTCTCTGCCCCTATTTCCTTGAGCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGTTTGGGCTTTTCTGTTCTCTCTGCCCCTATTTCCTTGAGCCT  497

seq1  TGGAAGGGGGTGATATGGGTGTCCTGTTTAAAGTTCAGCACTCAACTGCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGGGTGATATGGGTGTCCTGTTTAAAGTTCAGCACTCAACTGCC  547

seq1  ACTTCTCTGACACCTTGAGCAGCCAGGAGTCTCTGCATTGCCTCTATAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTGACACCTTGAGCAGCCAGGAGTCTCTGCATTGCCTCTATAAC  597

seq1  ATTGTGTCAAAATACTGTACTCTTAGCAGGTTGGTATTGTAACAAGTAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTCAAAATACTGTACTCTTAGCAGGTTGGTATTGTAACAAGTAAG  647

seq1  ACTCAAGCTAGGAGAGACCATTGCAGGCTTCTCTCCCTGAGCTGCCCGTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGCTAGGAGAGACCATTGCAGGCTTCTCTCCCTGAGCTGCCCGTA  697

seq1  TAGTAGCTTCTATAAACATGGTTAGTCAGCAGGATGGAAATTTCTACCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCTTCTATAAACATGGTTAGTCAGCAGGATGGAAATTTCTACCTT  747

seq1  AGAATAAGTTACTGCCACTCTTAGTTTCCATTGGACATCTTCCCTGCTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGTTACTGCCACTCTTAGTTTCCATTGGACATCTTCCCTGCTCT  797

seq1  GTCAGGGAATGGTTGTAGTGTCTTATGTGACTTTTTAATTTTATTTTATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGAATGGTTGTAGTGTCTTATGTGACTTTTTAATTTTATTTTATT  847

seq1  GAGGAAAAAAAAAAAGTAGCCCTGGCTAGCCTGGAACTTGCTTTGTAGGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAAAAAAAAGTAGCCCTGGCTAGCCTGGAACTTGCTTTGTAGGC  897

seq1  CAGGGTATCCTTAAAGGAGATCTGCCTGCCTCTGTCTTCTGATTGCTGGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTATCCTTAAAGGAGATCTGCCTGCCTCTGTCTTCTGATTGCTGGG  947

seq1  ATTACAGCAGTTCAACTGGGTTCATAAGTAATATTTACAATTTTATGGTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGCAGTTCAACTGGGTTCATAAGTAATATTTACAATTTTATGGTG  997

seq1  TGTGTGTTTTTTTAAAGAGCATTTCCTTAGGAAAACCAAGGAAATGAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTTTTTAAAGAGCATTTCCTTAGGAAAACCAAGGAAATGAATT  1047

seq1  C  1047
      |
seq2  C  1048


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