BAC Information

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BAC

Clone NameB6Ng01-227J11
Chromosome9 (Build37)
Map Location 6,893,592 - 6,894,719
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034
Downstream geneDync2h1, LOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227J11.bB6Ng01-227J11.g
ACCGA041223GA041224
length1,1281,189
definitionB6Ng01-227J11.b B6Ng01-227J11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctatagaaaacatcttctcagataaggtcttaacatattgaaca
tctattccttaaaaatctgtgcagtgagggcagagccaatgggatctgtg
tcttaatactgtctctccttctctcagggctgctgaggttttggtaacat
tggtgtacaaaatgtcttccagaaggaagacaagacatgaatactgtctg
tactggctagttttgtgtcaacttgacacagctggagttatcacagagaa
aggagcttcagttgaggaaatgcctccatgagatctaactgtaaggcatt
ttctcaattagtgatcaagggggaaaggccccttgtggatgggaccattt
ctgggctgggagtcttgggttctataagagagcaggctgagcaagccagg
ggaagcaagccagtaaagaacatccctccatggcttctgcatcagctcct
gctttctgacctgcttgagtttcagtcctgacttccttggtgataaagag
cagtatggaagtataagcccaataagctctttcctccccaacttgcttct
tggtcatgatgtttgtgcaagaataggaaccctgactaagacactgtcag
tagaaggagtggctgcaaagttcatcttctaacagcattgtcagcaatgt
gcctagatcaagtttgggcaacacttaggaatttttcttcacagacctat
gtaatgtgtttattgtttattgttctagataaggcagttttaagcatgaa
tctccagcattccaaggtctctaaagtctaccctgaaggtaaacaaaagt
tcctattgaaatccttcttttatgcttggtaagtggtgttgtcttcaact
atgtaccagattgagactggattcaatagtgttctgtacacagagacatt
ctatatactatataatataagcacacagcaagagttcaacatactacaag
gactatggcttctctggtggctatgtaattttcaaatcatgccctttagc
tactgaaggtaattgaattaaggagtagaaagcattatacagtgttcgtt
attatagtcacatcatctaatatgctcttggaggctagaagaatggtcag
agttcaaagtaaggcctgattttttgtt
gaattcctttgatgaaggctccaggaaatgcttttttgtttgtttgtttg
tttgttttttatcaatcttgccctgtagtaaagcttgaggtcagggatgg
tgattcacccagaagttattttattgttgagaataattttcattatcctg
gtttctttgtacactcaaacaagagaaagtagggaagagcttcttgaaca
gaaaaccagtagcttatactctaagatgaagaattgacaaatggaacctc
ataaaatttcaaagcttctgtaaggcaaaggacactgttaacaggacaaa
aaagcaaccaacagattggaaaaagatctttatcaatcctacatccaata
gagggctaatatctaatatatacaaagaactcagaaggtagactccagag
aagcaaataaccctattaaaaatggggtacagagctaaacagaattctca
actgaggaatactgaatggtcaagaagctcctaaatgcaagtcaaaacaa
ccctgagattccaccagtcaaaatggctaagatcaaaaactcaggtgaca
gcagatgctggtgatgatgtagagaaaagaggaacactcctctattgttg
gtagaattgaaagctggtactctagaagtcagtctggctgttcctcaaaa
aattggaggtagtactactggaagatccaacaataccactcctgggaata
tacccagaagatgctcccacatgtaataaggacacatgctccactatgtt
cacagcagccttatttataatagccagaagctggaaagaacccacatgcc
cttcaacagaggaatggatacagaaaatgtgttacatttacacaatggag
tactaccaagccattaaaatcaacgaattcatgaaattctcaggcaaatt
gatggaactagaaaatagagtcctgagtgaggtaacccaatcacaaagaa
cacgtatgaatacacactcactgataagtatagaaaggggtaacaaaaca
ctcacaggcggaaatatggagaacaaaggtgaggacagagactgaaggaa
ggcattcagaagactgccccacctgagatcatccattatatagtcaacaa
tgcagaacctattatcaatctagatgccttggctgacagggacttatatc
aggctgttcttctgaaggtttcctggtgcccaggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_6893592_6894719
seq2: B6Ng01-227J11.b_44_1171

seq1  GAATTCCTATAGAAAACATCTTCTCAGATAAGGTCTTAACATATTGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATAGAAAACATCTTCTCAGATAAGGTCTTAACATATTGAACA  50

seq1  TCTATTCCTTAAAAATCTGTGCAGTGAGGGCAGAGCCAATGGGATCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCTTAAAAATCTGTGCAGTGAGGGCAGAGCCAATGGGATCTGTG  100

seq1  TCTTAATACTGTCTCTCCTTCTCTCAGGGCTGCTGAGGTTTTGGTAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATACTGTCTCTCCTTCTCTCAGGGCTGCTGAGGTTTTGGTAACAT  150

seq1  TGGTGTACAAAATGTCTTCCAGAAGGAAGACAAGACATGAATACTGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTACAAAATGTCTTCCAGAAGGAAGACAAGACATGAATACTGTCTG  200

seq1  TACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAA  250

seq1  AGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCTAACTGTAAGGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCTAACTGTAAGGCATT  300

seq1  TTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGATGGGACCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGATGGGACCATTT  350

seq1  CTGGGCTGGGAGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTGGGAGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGG  400

seq1  GGAAGCAAGCCAGTAAAGAACATCCCTCCATGGCTTCTGCATCAGCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAGCCAGTAAAGAACATCCCTCCATGGCTTCTGCATCAGCTCCT  450

seq1  GCTTTCTGACCTGCTTGAGTTTCAGTCCTGACTTCCTTGGTGATAAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGACCTGCTTGAGTTTCAGTCCTGACTTCCTTGGTGATAAAGAG  500

seq1  CAGTATGGAAGTATAAGCCCAATAAGCTCTTTCCTCCCCAACTTGCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGGAAGTATAAGCCCAATAAGCTCTTTCCTCCCCAACTTGCTTCT  550

seq1  TGGTCATGATGTTTGTGCAAGAATAGGAACCCTGACTAAGACACTGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATGATGTTTGTGCAAGAATAGGAACCCTGACTAAGACACTGTCAG  600

seq1  TAGAAGGAGTGGCTGCAAAGTTCATCTTCTAACAGCATTGTCAGCAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGAGTGGCTGCAAAGTTCATCTTCTAACAGCATTGTCAGCAATGT  650

seq1  GCCTAGATCAAGTTTGGGCAACACTTAGGAATTTTTCTTCACAGACCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGATCAAGTTTGGGCAACACTTAGGAATTTTTCTTCACAGACCTAT  700

seq1  GTAATGTGTTTATTGTTTATTGTTCTAGATAAGGCAGTTTTAAGCATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTGTTTATTGTTTATTGTTCTAGATAAGGCAGTTTTAAGCATGAA  750

seq1  TCTCCAGCATTCCAAGGTCTCTAAAGTCTACCCTGAAGGTAAACAAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCATTCCAAGGTCTCTAAAGTCTACCCTGAAGGTAAACAAAAGT  800

seq1  TCCTATTGAAATCCTTCTTTTATGCTTGGTAAGTGGTGTTGTCTTCAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTGAAATCCTTCTTTTATGCTTGGTAAGTGGTGTTGTCTTCAACT  850

seq1  ATGTACCAGATTGAGACTGGATTCAATAGTGTTCTGTACACAGAGACATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCAGATTGAGACTGGATTCAATAGTGTTCTGTACACAGAGACATT  900

seq1  CTATATACTATATAATATAAGCACACAGCAAGAGTTCAACATACTACAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATACTATATAATATAAGCACACAGCAAGAGTTCAACATACTACAAG  950

seq1  GACTATGGCTTCTCTGGTGGCTATGTAATTTTCAAATCATG-CCTTTAGC  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACTATGGCTTCTCTGGTGGCTATGTAATTTTCAAATCATGCCCTTTAGC  1000

seq1  TACTG-AGGTAATTGAATTAAGAAGTAGAAAGCATTAATACAGTGTTCGT  1048
      ||||| |||||||||||||||| ||||||||||||| |||||||||||||
seq2  TACTGAAGGTAATTGAATTAAGGAGTAGAAAGCATT-ATACAGTGTTCGT  1049

seq1  --ATATAGTCACATCATCTAATTATTGCTCTT-GAGGCTAGA--GATGGT  1093
         |||||||||||||||||||   ||||||| |||||||||   |||||
seq2  TATTATAGTCACATCATCTAAT--ATGCTCTTGGAGGCTAGAAGAATGGT  1097

seq1  CCAGAGTTTCAAAGTAAGGGCTGTTTTTTTTTGTT  1128
       ||||| |||||||||||| |||   |||||||||
seq2  -CAGAG-TTCAAAGTAAGGCCTG--ATTTTTTGTT  1128