BAC Information

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BAC

Clone NameB6Ng01-227O03
Chromosome9 (Build37)
Map Location 107,500,791 - 107,693,130
singlet/doubletdoublet
Overlap geneSema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6
Upstream geneLOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835
Downstream geneMon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227O03.bB6Ng01-227O03.g
ACCGA041436GA041437
length515995
definitionB6Ng01-227O03.b B6Ng01-227O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,692,645 - 107,693,130)(107,500,791 - 107,501,784)
sequence
tctcctttgggactaatgttcatttaaggcagtggtggcatacgcctttg
atcccaacacttggaggcagaggcaggtggatttctgagttggaggccag
cctggtcaacagagtgagttccaggacagccagggctacagagaaaccct
gtcttgaaaaaaagaactccatatgcactttaaaaacaaagctaagcacc
aaactcttgtacattttaattttagcgtgttttctaagtttttcttaatt
actttttttctagtcacagttggttttatattagatagtaataggacgtt
tcttctttcctgaaaagtatatataaaatagattgtttgtttgtttgttt
gtttgtttgtttgtttgtttgtttgtttgagatagggtctctctacatag
tccaggaactcactctgtaaacaaggctggcctccaactcagaaatccac
ctgcctctgcctccaagtgttgggatcaaaggcgtatgccaccactgcct
taaatgaacattagt
gaattctttccccagggctgccacccaagacaactctctggtcctggtcc
actctggaaccccacgtctctgtcccctccctcctggttagatcctgaat
tgagcttaggccactctttgaggctacatccacgggttatcttgttaata
aataagctaccctttggccagggcctatgtaagggttaggtgtctctgtt
ggcccaaggacctcagtgtggcccagccataactcatttgtcttcctggc
atctgtctgcccctctttggagtgtcatattcagcctcgtcccattgtgg
ggacagccgagtcaccagtgagctgcactacgtggtccacgctcagcacg
gagctcagagacatgcatccgtctgttgcgacccttacgacgtgaatctg
ctgccacagagtggtgcccgggctgcgggcggcacattcgcagggagttt
gcacctccgccaccgcctggctccaccaactgcagaaagtcccggtacca
gagtttagggccaggaggtgcaggagcggctgcttcctctgcccgtgcca
gtcgttcagcctgcgccgcactcaacacatgcagcaccaggcgacgcagt
ggttgtgaaaagccttgttcaaccgcgacgcaaagatacacgccagagtc
ctggcgccgcagcccccgcaacagcagcccccgcgcagtgcgctctactc
tctcctcagccagcacctgtgtgtgagggaagggacagaaacaaggatca
ttggaagccaaaggtggacaaggaaaatgggtgctggcattgactcactt
taaagggtatgtgaacttagccttcggaggatgagtccatctaggtgagt
gggggattgggtagactagaaacctcagtgcgcgcgtggggggttgaggc
tttctctcctccagatggtagagggtgggtcaaggagtctaagtggcact
agttgggcatcactaaggtgtggagctaacgacagtcagaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107692645_107693130
seq2: B6Ng01-227O03.b_46_515 (reverse)

seq1  GGAGGCAGAGGCAGAGAGGCAGAGGCAGAGGGATCTCTGTGAGTTCGAGG  50
                     |||||||||||||  |||| ||  |||||| ||||
seq2  --------------GGAGGCAGAGGCAGGTGGATTTC--TGAGTTGGAGG  34

seq1  CCAGCCTTGTTTACAGAGTGAGTTCCTGGACTATGTAGAGAGACCCTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTGTTTACAGAGTGAGTTCCTGGACTATGTAGAGAGACCCTATC  84

seq1  TCAAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAATC  134

seq1  TATTTTATATATACTTTTCAGGAAAGAAGAAACGTCCTATTACTATCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATATATACTTTTCAGGAAAGAAGAAACGTCCTATTACTATCTAA  184

seq1  TATAAAACCAACTGTGACTAGAAAAAAAGTAATTAAGAAAAACTTAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACCAACTGTGACTAGAAAAAAAGTAATTAAGAAAAACTTAGAAA  234

seq1  ACACGCTAAAATTAAAATGTACAAGAGTTTGGTGCTTAGCTTTGTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCTAAAATTAAAATGTACAAGAGTTTGGTGCTTAGCTTTGTTTTTA  284

seq1  AAGTGCATATGGAGTTCTTTTTTTCAAGACAGGGTTTCTCTGTAGCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATATGGAGTTCTTTTTTTCAAGACAGGGTTTCTCTGTAGCCCTG  334

seq1  GCTGTCCTGGAACTCACTCTGTTGACCAGGCTGGCCTCCAACTCAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTCACTCTGTTGACCAGGCTGGCCTCCAACTCAGAAAT  384

seq1  CCACCTGCCTCTGCCTCCAAGTGTTGGGATCAAAGGCGTATGCCACCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCCTCTGCCTCCAAGTGTTGGGATCAAAGGCGTATGCCACCACT  434

seq1  GCCTTAAATGAACATTAGTCCCAAAGGAGAGAATTC  486
      ||||||||||||||||||||||||||||||||||||
seq2  GCCTTAAATGAACATTAGTCCCAAAGGAGAGAATTC  470

seq1: chr9_107500791_107501784
seq2: B6Ng01-227O03.g_68_1062

seq1  GAATTCTTTCCCCAGGGCTGCCACCCAAGACAACTCTCTGGTCCTGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCCAGGGCTGCCACCCAAGACAACTCTCTGGTCCTGGTCC  50

seq1  ACTCTGGAACCCCACGTCTCTGTCCCCTCCCTCCTGGTTAGATCCTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGAACCCCACGTCTCTGTCCCCTCCCTCCTGGTTAGATCCTGAAT  100

seq1  TGAGCTTAGGCCACTCTTTGAGGCTACATCCACGGGTTATCTTGTTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTAGGCCACTCTTTGAGGCTACATCCACGGGTTATCTTGTTAATA  150

seq1  AATAAGCTACCCTTTGGCCAGGGCCTATGTAAGGGTTAGGTGTCTCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTACCCTTTGGCCAGGGCCTATGTAAGGGTTAGGTGTCTCTGTT  200

seq1  GGCCCAAGGACCTCAGTGTGGCCCAGCCATAACTCATTTGTCTTCCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAGGACCTCAGTGTGGCCCAGCCATAACTCATTTGTCTTCCTGGC  250

seq1  ATCTGTCTGCCCCTCTTTGGAGTGTCATATTCAGCCTCGTCCCATTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTGCCCCTCTTTGGAGTGTCATATTCAGCCTCGTCCCATTGTGG  300

seq1  GGACAGCCGAGTCACCAGTGAGCTGCACTACGTGGTCCACGCTCAGCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCGAGTCACCAGTGAGCTGCACTACGTGGTCCACGCTCAGCACG  350

seq1  GAGCTCAGAGACATGCATCCGTCTGTTGCGACCCTTACGACGTGAATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGAGACATGCATCCGTCTGTTGCGACCCTTACGACGTGAATCTG  400

seq1  CTGCCACAGAGTGGTGCCCGGGCTGCGGGCGGCACATTCGCAGGGAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACAGAGTGGTGCCCGGGCTGCGGGCGGCACATTCGCAGGGAGTTT  450

seq1  GCACCTCCGCCACCGCCTGGCTCCACCAACTGCAGAAAGTCCCGGTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCCGCCACCGCCTGGCTCCACCAACTGCAGAAAGTCCCGGTACCA  500

seq1  GAGTTTAGGGCCAGGAGGTGCAGGAGCGGCTGCTTCCTCTGCCCGTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGGGCCAGGAGGTGCAGGAGCGGCTGCTTCCTCTGCCCGTGCCA  550

seq1  GTCGTTCAGCCTGCGCCGCACTCAACACATGCAGCACCAGGCGACGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTCAGCCTGCGCCGCACTCAACACATGCAGCACCAGGCGACGCAGT  600

seq1  GGTTGTGAAAAGCCTTGTTCAACCGCGACGCAAAGATACACGCCAGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAAAAGCCTTGTTCAACCGCGACGCAAAGATACACGCCAGAGTC  650

seq1  CTGGCGCCGCAGCCCCCGCAACAGCAGCCCCCGCGCAGTGCGCTCTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGCCGCAGCCCCCGCAACAGCAGCCCCCGCGCAGTGCGCTCTACTC  700

seq1  TCTCCTCAGCCAGCACCTGTGTGTGAGGGAAGGGACAGAAACAAGGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCAGCCAGCACCTGTGTGTGAGGGAAGGGACAGAAACAAGGATCA  750

seq1  TTGGAAGCCAAAGGTGGACAAGGAAAATGGGTGCTGGCATTGACTCACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGCCAAAGGTGGACAAGGAAAATGGGTGCTGGCATTGACTCACTT  800

seq1  TAAAGGGTATGTGAACTTAGCCTTCGGAGGATGAGTCCATCTAGGTGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGTATGTGAACTTAGCCTTCGGAGGATGAGTCCATCTAGGTGAGT  850

seq1  GGGGGATTGGGTAGACTAGAAACCTCAGTGCGCGCGTGGGGGGTTGAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGGGGATTGGGTAGACTAGAAACCTCAGTGCGCGCGTGGGGGGTTGA-GG  899

seq1  CTTTCTCT-CTCCAGATGGTAGAGGGTGGGTC-AGGAGTCTAGGTGGGCA  948
      |||||||| ||||||||||||||||||||||| ||||||||| || ||||
seq2  CTTTCTCTCCTCCAGATGGTAGAGGGTGGGTCAAGGAGTCTAAGT-GGCA  948

seq1  C-AGTTGGGGCATCACTAGGTTGTGGAGCTAAGGACAGT-AGAGGATG  994
      | |||| ||||||||||| | ||||||||||| |||||| ||||||||
seq2  CTAGTT-GGGCATCACTAAGGTGTGGAGCTAACGACAGTCAGAGGATG  995