BAC Information

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BAC

Clone NameB6Ng01-228C16
Chromosome9 (Build37)
Map Location 91,304,293 - 91,475,923
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039777, LOC100039925, EG434428, LOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228C16.bB6Ng01-228C16.g
ACCGA041645GA041646
length756943
definitionB6Ng01-228C16.b B6Ng01-228C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,304,293 - 91,305,047)(91,474,984 - 91,475,923)
sequence
gaattctttacacttcagattttcattcacagaccctgaccaaatctact
gtgataccagtattgtattctccatccgctcccaattattcctggcagag
aatttggagccgggaccatgatgtcggctagggatgaactctggagtgca
ctggagatttgagattttaatgtgtaggaattgatctcaaaccgcagttt
tataaaaatccaggctcagagatgttggggcgggagatgggggcgggagg
aaggctctgctttcagactattttgtataaaagtcgtgaattcagaatta
gagggggaaggagagcaggtaggtgttagaggaagtgcaggggcagctcc
ctcccctggttagaggtgtggcatccctttggcttctgacagttcaggag
ccccttagtttgtcaacagaggaactgccagtagcacttgggctaatctg
tcgctagggaaagactgtttctgcagggagggtctgagctctttgtctgt
tttatctagaggtatgctgggactgagaaaaggagccctaaccaatttcc
tagtctactgatatgtagctcttgaaggtcagacccctccctagttcatc
tgtttctcaactttctgcaggctcccttcctccactttcccccacctatg
ctccagactctctactaacgtaaactttcctctcctctcctactttggac
ctcttccggtcctttcaactcctcacaggaaccctgcagatctctgttgg
tctccc

gaattctttgaggctttatatttttgaaattccattataaaagaattgtt
acaaattgagaaaatgtaaatttctgaacatttttatgaaattcttctat
gagtgtgcatttcatgttacatattagtaagaatatataaaggagtgtgc
ttgtttattcaacttgaatgccaggagtgtggaaaattatttttgtgaag
catttcgagcaacttagaaagtaaatgtaattggacccaacaagaagtat
tatctatggatcaataaaaatccctgatcacaaaaactctccaaaacaga
cctacatgtgagaaatagaaaaaaaatctcttttggattgctatttataa
tatcaagtgatttcaaaacttgtatgttaaaatttcaaaatattactcca
tagctcctttgactttcaagagctacagcttaaacattaattgatactaa
tctaagttgagaaggagctatgtattacacttttatgatgtgtagaagat
gggtctcattcaatggcttttgacatttgataattacttcttcacttaag
attacatctttctcccaagatctttttaatgttatttgcttatagtcaca
tgatagaagttctcttcctaatttaagaaaatcattaaattgcttacaaa
ccaaagtagaaaataaagcttttaccttgatcaaattttcatcaaggaat
gattccctacacattgccccatgtcaggtaaggacaaattaataagcttg
aagtcttaagcacagacagaaatgtgttggttggaataagaaaggcccct
ataggatcataaatttgaatgtttagttcccagtgaatggaattgcttga
gaaaggattaggagttatggccttgttagaagaggtgtgtcactataggt
tgctttgcgatttaaagtccactctaggcaatagtccctagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_91304293_91305047
seq2: B6Ng01-228C16.b_47_802

seq1  GAATTCTTTACACTTCAGATTTTCATTCACAGACCCTGACCAAATCTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACACTTCAGATTTTCATTCACAGACCCTGACCAAATCTACT  50

seq1  GTGATACCAGTATTGTATTCTCCATCCGCTCCCAATTATTCCTGGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACCAGTATTGTATTCTCCATCCGCTCCCAATTATTCCTGGCAGAG  100

seq1  AATTTGGAGCCGGGACCATGATGTCGGCTAGGGATGAACTCTGGAGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGAGCCGGGACCATGATGTCGGCTAGGGATGAACTCTGGAGTGCA  150

seq1  CTGGAGATTTGAGATTTTAATGTGTAGGAATTGATCTCAAACCGCAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATTTGAGATTTTAATGTGTAGGAATTGATCTCAAACCGCAGTTT  200

seq1  TATAAAAATCCAGGCTCAGAGATGTTGGGGCGGGAGATGGGGGCGGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATCCAGGCTCAGAGATGTTGGGGCGGGAGATGGGGGCGGGAGG  250

seq1  AAGGCTCTGCTTTCAGACTATTTTGTATAAAAGTCGTGAATTCAGAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCTGCTTTCAGACTATTTTGTATAAAAGTCGTGAATTCAGAATTA  300

seq1  GAGGGGGAAGGAGAGCAGGTAGGTGTTAGAGGAAGTGCAGGGGCAGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGAAGGAGAGCAGGTAGGTGTTAGAGGAAGTGCAGGGGCAGCTCC  350

seq1  CTCCCCTGGTTAGAGGTGTGGCATCCCTTTGGCTTCTGACAGTTCAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTGGTTAGAGGTGTGGCATCCCTTTGGCTTCTGACAGTTCAGGAG  400

seq1  CCCCTTAGTTTGTCAACAGAGGAACTGCCAGTAGCACTTGGGCTAATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTAGTTTGTCAACAGAGGAACTGCCAGTAGCACTTGGGCTAATCTG  450

seq1  TCGCTAGGGAAAGACTGTTTCTGCAGGGAGGGTCTGAGCTCTTTGTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTAGGGAAAGACTGTTTCTGCAGGGAGGGTCTGAGCTCTTTGTCTGT  500

seq1  TTTATCTAGAGGTATGCTGGGACTGAGAAAAGGAGCCCTAACCAATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTAGAGGTATGCTGGGACTGAGAAAAGGAGCCCTAACCAATTTCC  550

seq1  TAGTCTACTGATATGTAGCTCTTGAAGGTCAGACCCCTCCCTAGTTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTACTGATATGTAGCTCTTGAAGGTCAGACCCCTCCCTAGTTCATC  600

seq1  TGTTTCTCAACTTTCTGCAGGCTCCCTTCCTCCACTTTCCCCCACCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCAACTTTCTGCAGGCTCCCTTCCTCCACTTTCCCCCACCTATG  650

seq1  CTCCAGACTCTCTACTAACGTAAACTTTCCTCTCCTCTCCTACTTTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACTCTCTACTAACGTAAACTTTCCTCTCCTCTCCTACTTTGGAC  700

seq1  CTCTTCCGGTCCTTTCAACTCCTCACAGGAACCCTGCAGATCTCTG-TGG  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCTTCCGGTCCTTTCAACTCCTCACAGGAACCCTGCAGATCTCTGTTGG  750

seq1  TCTCCC  755
      ||||||
seq2  TCTCCC  756


seq1: chr9_91474984_91475923
seq2: B6Ng01-228C16.g_68_1010 (reverse)

seq1  GACTA-GGACTA-TGCCTAGAGTGGACTTTAAATCGCAAAGCAACCTATA  48
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  GACTAGGGACTATTGCCTAGAGTGGACTTTAAATCGCAAAGCAACCTATA  50

seq1  GTGACACACCTCTTCTAACAAGGCCATAACTCCTAATCC-TTCTCAAGCA  97
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGACACACCTCTTCTAACAAGGCCATAACTCCTAATCCTTTCTCAAGCA  100

seq1  ATTCCATTCACTGGGAACTAAACATTCAAATTTATGATCCTATAGGGGCC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTCACTGGGAACTAAACATTCAAATTTATGATCCTATAGGGGCC  150

seq1  TTTCTTATTCCAACCAACACATTTCTGTCTGTGCTTAAGACTTCAAGCTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTCCAACCAACACATTTCTGTCTGTGCTTAAGACTTCAAGCTT  200

seq1  ATTAATTTGTCCTTACCTGACATGGGGCAATGTGTAGGGAATCATTCCTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTGTCCTTACCTGACATGGGGCAATGTGTAGGGAATCATTCCTT  250

seq1  GATGAAAATTTGATCAAGGTAAAAGCTTTATTTTCTACTTTGGTTTGTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAATTTGATCAAGGTAAAAGCTTTATTTTCTACTTTGGTTTGTAA  300

seq1  GCAATTTAATGATTTTCTTAAATTAGGAAGAGAACTTCTATCATGTGACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTAATGATTTTCTTAAATTAGGAAGAGAACTTCTATCATGTGACT  350

seq1  ATAAGCAAATAACATTAAAAAGATCTTGGGAGAAAGATGTAATCTTAAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAAATAACATTAAAAAGATCTTGGGAGAAAGATGTAATCTTAAGT  400

seq1  GAAGAAGTAATTATCAAATGTCAAAAGCCATTGAATGAGACCCATCTTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTAATTATCAAATGTCAAAAGCCATTGAATGAGACCCATCTTCT  450

seq1  ACACATCATAAAAGTGTAATACATAGCTCCTTCTCAACTTAGATTAGTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCATAAAAGTGTAATACATAGCTCCTTCTCAACTTAGATTAGTAT  500

seq1  CAATTAATGTTTAAGCTGTAGCTCTTGAAAGTCAAAGGAGCTATGGAGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATGTTTAAGCTGTAGCTCTTGAAAGTCAAAGGAGCTATGGAGTA  550

seq1  ATATTTTGAAATTTTAACATACAAGTTTTGAAATCACTTGATATTATAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGAAATTTTAACATACAAGTTTTGAAATCACTTGATATTATAAA  600

seq1  TAGCAATCCAAAAGAGATTTTTTTTCTATTTCTCACATGTAGGTCTGTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATCCAAAAGAGATTTTTTTTCTATTTCTCACATGTAGGTCTGTTT  650

seq1  TGGAGAGTTTTTGTGATCAGGGATTTTTATTGATCCATAGATAATACTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTTTTTGTGATCAGGGATTTTTATTGATCCATAGATAATACTTC  700

seq1  TTGTTGGGTCCAATTACATTTACTTTCTAAGTTGCTCGAAATGCTTCACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGGTCCAATTACATTTACTTTCTAAGTTGCTCGAAATGCTTCACA  750

seq1  AAAATAATTTTCCACACTCCTGGCATTCAAGTTGAATAAACAAGCACACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTTCCACACTCCTGGCATTCAAGTTGAATAAACAAGCACACT  800

seq1  CCTTTATATATTCTTACTAATATGTAACATGAAATGCACACTCATAGAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATATATTCTTACTAATATGTAACATGAAATGCACACTCATAGAAG  850

seq1  AATTTCATAAAAATGTTCAGAAATTTACATTTTCTCAATTTGTAACAATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATAAAAATGTTCAGAAATTTACATTTTCTCAATTTGTAACAATT  900

seq1  CTTTTATAATGGAATTTCAAAAATATAAAGCCTCAAAGAATTC  940
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAATGGAATTTCAAAAATATAAAGCCTCAAAGAATTC  943


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