BAC Information

Click to search

BAC

Clone NameB6Ng01-228D04
Chromosome9 (Build37)
Map Location 37,061,802 - 37,062,917
singlet/doubletsinglet
Overlap geneSlc37a2
Upstream geneLOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, LOC100042561
Downstream geneCcdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228D04.bB6Ng01-228D04.g
ACCGA041667GA041668
length1,2341,126
definitionB6Ng01-228D04.b B6Ng01-228D04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcatgggcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagataag
gcattctgtcaatccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaatacgtatctactccagtaagaacaaaa
cgctgtcctttccatgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctgggactcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagccttggtgagtggaagcccgtgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctgcggagagaggctgactgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcggctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttggagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
gtcagtgaataatcgtacatctggccatttcttcttgcaaacaaactgta
ataccatgtgtactgcccgaagttctgcccactgtgaagatttccccttc
acctgtgtctttcaaggttgtcccagaaaggggttgtaatgctgcagctg
tccacttctgggtggtgcctgcataacgtgcagagccatcagttaaacca
ggctctagttttctcctcttcggtcagttgatcatagggaacaccccatg
aggctataggcgcatgcttggcagcagatggcattgttaacaggagtaga
aaccattaggcattttggagcactttcttcatgtacttgcttgtgccttc
aggacctgctctggcccgatcacgtatataccacttccattgataaatag
actgctgctgtgccgcgtccactttatgaacttgcaaggactgatagtaa
ccaagctcagtgaatggtagtttcaagtcgcaatagatacctggggttct
attggtcaaccgttcagattttcaccataaagac
gaattctctttctacccaattatgacatcttctagctccttcattatgag
ggcagtacacgctctcactctcgtgttcatctccttttgagagacatttt
ctctctttctgaaaacataaaactgtttaatagttccaaatgtagaaagg
accacataaaccatctaaagaatgttttagatgattattagcctgagaga
ccttgaaacaaaatgacttattttaaaaccaggccaaattgatgactaag
tatctgcccaatctgacccttagtttagtttgagaatttagatttgagat
tgctgtgtcatctgttttgtttttgttttgttttttttagaagccagcaa
ctggctattttgttaagttttatagtttataaatgacggtaactaacaaa
atgttttaacactcttccttccccacctcttgcagaccaagtacactgct
ccaaaagctcaatggagattggctaaaacctcttctcccagcacaagggt
gaccttgtggtcctgggagcagctgctgtcaatgccagctcatgctttta
agggtgaccacccagtgttggagcagctgcagctctgatcccagagatct
tgccctagctaggtatccctgagactggaagggtcagacaggctttaata
gaaccagtgatttctggcttgttaactaatctaatcaataggggccttaa
gctctctggctccatttatattctacccagtttcttggcctgggttcctc
aaaggcaaatccggatccctccaaatacacagataagacttggaggcact
ccacaggtacccggctttgtgcgcttgtgtttgcagatacggggtggcaa
acccaaaaggatgaagactcctaggcaccctgtttgttcttcaccggggt
tagacagaagtctgggctaatgtggaatttatagttctgtgttactataa
cttccacgcctgccgccacccgaaggagcccttgcaagatagaactagaa
ccccattccccccactccaggacagcaaaacatccgccgctcgaagcaag
tctctgcgcgttcttgacagcttcccttccgagccctgactcacagctgg
tcctagagaaaggcggaagaaccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_37061802_37062917
seq2: B6Ng01-228D04.g_67_1192

seq1  GAATTCTCTTTCTACCCAATTATGACATCTTCTAGCTCCTTCATTATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTACCCAATTATGACATCTTCTAGCTCCTTCATTATGAG  50

seq1  GGCAGTACACGCTCTCACTCTCGTGTTCATCTCCTTTTGAGAGACATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTACACGCTCTCACTCTCGTGTTCATCTCCTTTTGAGAGACATTTT  100

seq1  CTCTCTTTCTGAAAACATAAAACTGTTTAATAGTTCCAAATGTAGAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCTGAAAACATAAAACTGTTTAATAGTTCCAAATGTAGAAAGG  150

seq1  ACCACATAAACCATCTAAAGAATGTTTTAGATGATTATTAGCCTGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATAAACCATCTAAAGAATGTTTTAGATGATTATTAGCCTGAGAGA  200

seq1  CCTTGAAACAAAATGACTTATTTTAAAACCAGGCCAAATTGATGACTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAACAAAATGACTTATTTTAAAACCAGGCCAAATTGATGACTAAG  250

seq1  TATCTGCCCAATCTGACCCTTAGTTTAGTTTGAGAATTTAGATTTGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCCCAATCTGACCCTTAGTTTAGTTTGAGAATTTAGATTTGAGAT  300

seq1  TGCTGTGTCATCTGTTTTGTTTTTGTTTTGTTTTTTTTAGAAGCCAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTCATCTGTTTTGTTTTTGTTTTGTTTTTTTTAGAAGCCAGCAA  350

seq1  CTGGCTATTTTGTTAAGTTTTATAGTTTATAAATGACGGTAACTAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTATTTTGTTAAGTTTTATAGTTTATAAATGACGGTAACTAACAAA  400

seq1  ATGTTTTAACACTCTTCCTTCCCCACCTCTTGCAGACCAAGTACACTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTAACACTCTTCCTTCCCCACCTCTTGCAGACCAAGTACACTGCT  450

seq1  CCAAAAGCTCAATGGAGATTGGCTAAAACCTCTTCTCCCAGCACAAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGCTCAATGGAGATTGGCTAAAACCTCTTCTCCCAGCACAAGGGT  500

seq1  GACCTTGTGGTCCTGGGAGCAGCTGCTGTCAATGCCAGCTCATGCTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGTGGTCCTGGGAGCAGCTGCTGTCAATGCCAGCTCATGCTTTTA  550

seq1  AGGGTGACCACCCAGTGTTGGAGCAGCTGCAGCTCTGATCCCAGAGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGACCACCCAGTGTTGGAGCAGCTGCAGCTCTGATCCCAGAGATCT  600

seq1  TGCCCTAGCTAGGTATCCCTGAGACTGGAAGGGTCAGACAGGC-TTAATA  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCCCTAGCTAGGTATCCCTGAGACTGGAAGGGTCAGACAGGCTTTAATA  650

seq1  GAACCAGTGATTTCTGGCTTGTTAACTAATCTAATCAATAGGGGCCTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGTGATTTCTGGCTTGTTAACTAATCTAATCAATAGGGGCCTTAA  700

seq1  GCTCTCTGGCTCCATTTATATTCTA-CCAG-TTCTTGGCCTGGGTTCCTC  747
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  GCTCTCTGGCTCCATTTATATTCTACCCAGTTTCTTGGCCTGGGTTCCTC  750

seq1  AAAGGCAAATCCGGAT-CCTCCAAATACACAGATAAGACTTGGAGGCACT  796
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAGGCAAATCCGGATCCCTCCAAATACACAGATAAGACTTGGAGGCACT  800

seq1  CCACAGGTACCCG--CTTGTGCGCTTGTGTTTGCAGATACGGGGTGGCAA  844
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  CCACAGGTACCCGGCTTTGTGCGCTTGTGTTTGCAGATACGGGGTGGCAA  850

seq1  ACCAAAAAGGATGAAGACTCCTAGGCACCCTGTTTGTTCTTCACCGGGGT  894
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAAGGATGAAGACTCCTAGGCACCCTGTTTGTTCTTCACCGGGGT  900

seq1  TAGACAGAAGTCTGGGCTAATGTGGAATTAATAGTTCTGTGTTACTA-AA  943
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  TAGACAGAAGTCTGGGCTAATGTGGAATTTATAGTTCTGTGTTACTATAA  950

seq1  CTTCCACGCCTG-CGCCA-CCGAAGGAGCCC-TGCCAGATAGAACTAGAA  990
      |||||||||||| ||||| |||||||||||| ||| ||||||||||||||
seq2  CTTCCACGCCTGCCGCCACCCGAAGGAGCCCTTGCAAGATAGAACTAGAA  1000

seq1  CCCCAT--CCCCCACTCCAGGGACAAGCAGAAACATCCGCCGCCCG-AGC  1037
      ||||||  ||||||||||| |||| |||| ||||||||||||| || |||
seq2  CCCCATTCCCCCCACTCCA-GGAC-AGCA-AAACATCCGCCGCTCGAAGC  1047

seq1  AAGTCTCTGCGCG-TCTTGGCAGCCTCCCTCCCCAGCCCTG-CTCACCAG  1085
      ||||||||||||| ||||| |||| ||||| || ||||||| |||| |||
seq2  AAGTCTCTGCGCGTTCTTGACAGCTTCCCTTCCGAGCCCTGACTCA-CAG  1096

seq1  CTGTCCCTAGAGAAGGCGCGAAGGAACCAGA  1116
      |||  ||||||||| | ||| | ||||||||
seq2  CTGGTCCTAGAGAAAG-GCGGAAGAACCAGA  1126