BAC Information

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BAC

Clone NameB6Ng01-228H12
Chromosome9 (Build37)
Map Location 5,352,939 - 5,418,663
singlet/doubletdoublet
Overlap geneCasp12
Upstream gene8430410K20Rik, Gria4, EG664889, Casp1, Casp4
Downstream geneLOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228H12.bB6Ng01-228H12.g
ACCGA041874GA041875
length1,1401,003
definitionB6Ng01-228H12.b B6Ng01-228H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,417,510 - 5,418,663)(5,352,939 - 5,353,933)
sequence
gaattctccctcaaactgcacacacctagattccctatgacactgctaac
taaaagcatccttcatctgtggctgcagttgcagtccatgataccattcc
aatgggaactgggaaatgtatggaattatgagtaatggctgacacaaact
gatgtacacagaagctttcagggagaaatgaaagataggaagggcttgca
ctagaactcactgaaatattttagaagttgttcagtaagttaatgtccct
tagcaatttactaataaatgtctttactatttctgcagatcaacatcatt
cacctacctagtgctaagaaattgtgcatgcaatgtgtgacattcaattg
tttggcatgtatactgtatgagaataacctgtgtttagaatacatagagt
ggaacagagataaaggcttgagtttggtagttgttcagtctggcactgag
gtaggaatgaatttatgatggaatttatctcacatatcataaatactaac
gtgaatccaagaaataactgagagaatcatacatccaaaagaggtaatat
gctatccttatacacaagaaatctttgggacctgtgccaagatgtcaccg
attgacctgaaaatgattgccctggatattaatttctctagcaaaactct
tcagtgccatctgtaattaatttctgccctgattaccagggccaaataat
ttaacacatggtcatgttgtgtggctaccccatgcccactcattttatca
tttctaaagcaaggattgataatacattggtcttactccttaactttaaa
caaacatgattattccttctttctgtctatatcattattttcctcaatgt
ttagaaattggagatagttcatcttgggcaaattattcaatgttctgttt
ctgaattttctacttataaaatttggggaaatttagccttataatagctc
attataaatcagattaatttgaaattcttcttatgaagcatccatctcag
aataactactaattatttcaacattatttttagtttgtgctttattttaa
cagatgcacattacaaagtattgcactgagacaagttctgtgtatatact
cagtctgtgtttattgacgcctcctctatcccagcagttc

gaattcctgagttttgaccttctccaaagtgtagtttcatagaaattatt
cacagaatgccttgtaacattattttaacaaaacaggagtatttcttaag
tgttagtctgcgtgtctccattaactggtattctaagagacacataaact
ctgagccttgaaatttccacaatccagagaataaacacataagatttaac
aatatcagaacaaaatgcctaattattgaaagttatacaaaggttgtgat
ctcagttctgttcaaagcaacctgggcagatttgattaaactatgcaaaa
cttgatattgtttgatgtgaaaaaatttcacatttctaattttttttaac
ataaacttctctgtgtaccacttctttcaatgtgaattttccaaaaccta
attgtataaaagttagtttctattatattccatctcttatagtctgtaga
aatccaagattttccttaaaaccataggaatgaaaactatgtttaaaaaa
aacaaacaaacaaaaaacaaaaaaaactaatgttcataacattttcagat
ctgatgtaaaaatattacttatcttacttctttgcccaaattgcttgact
gatagaagttatttagtttttgtgaactccctttgttattcagatacaaa
ctttatttggagaattcattgggtttgactctagagtctttttaggaaat
ggagacagagtttaatgcagtttgctggccgtccagagcaccagttcctc
agacagcacattcctggtgtttatgtcccatggcatcctggaaggaatct
gtggggtgaagcaccgaaacaaaaagccagatgttcttcatgatgacact
tatcttcaaaattttccaacaactctaactgtcggagtcttgagaaacaa
accccaagattctcatcatgcaggcctgcagaggcagtgagtcagagtca
gggttctagcatgtgggttctaactttccctctatgaatctggcatgcct
cca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5417510_5418663
seq2: B6Ng01-228H12.b_48_1187 (reverse)

seq1  GAACTGCTGGGGAATAGA-GAGCGGTCAATAAACACAGGCCCTGAAGGTA  49
      |||||||||||  ||||| |||  ||||||||||||||   ||||  || 
seq2  GAACTGCTGGG--ATAGAGGAGGCGTCAATAAACACAG--ACTGA--GT-  43

seq1  ATATTACACAGACTTTGTCTCCAGTGC-ATACTTTTGTTAATGTGCATCT  98
      ||| ||||||||  |||||| |||||| |||||||   ||||||||||||
seq2  ATA-TACACAGAACTTGTCT-CAGTGCAATACTTT--GTAATGTGCATCT  89

seq1  GTT-AAATAAAGCACAAAACTTAAAAATAATGTTG-AATATTTAGTAGTT  146
      ||| ||||||||||||||   |||||||||||||| |||| |||||||||
seq2  GTTAAAATAAAGCACAAA--CTAAAAATAATGTTGAAATAATTAGTAGTT  137

seq1  ATTCTGAGATGGATGCTTTCATAAGAAG-ATTTCAAATTAATCTTGATTT  195
      |||||||||||||||| ||||||||||| |||||||||||||| |||  |
seq2  ATTCTGAGATGGATGC-TTCATAAGAAGAATTTCAAATTAATC-TGA--T  183

seq1  TTATAATGAGCTATTTATAAGGCTAAATTTCCCC-AATTTTATAAGTAAG  244
      ||||||||||||| |||||||||||||||||||| |||||||||||| ||
seq2  TTATAATGAGCTA-TTATAAGGCTAAATTTCCCCAAATTTTATAAGT-AG  231

seq1  AAAATTCAGAAACAGAACATTTGAATAATTTGCCCAAGATGAACTATCTC  294
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAATTCAGAAACAGAACA-TTGAATAATTTGCCCAAGATGAACTATCTC  280

seq1  CAATTTCTAAACATTGAGGAAAATAATGATATAGACAGAAAGAAGGAATA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTAAACATTGAGGAAAATAATGATATAGACAGAAAGAAGGAATA  330

seq1  ATCATGTTTGTTTAAAGTTAAGGAGTAAGACCAATGTATTATCAATCCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTTGTTTAAAGTTAAGGAGTAAGACCAATGTATTATCAATCCTT  380

seq1  GCTTTAGAAATGATAAAATGAGTGGGCATGGGGTAGCCACACAACATGAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGAAATGATAAAATGAGTGGGCATGGGGTAGCCACACAACATGAC  430

seq1  CATGTGTTAAATTATTTGGCCCTGGTAATCAGGGCAGAAATTAATTACAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTAAATTATTTGGCCCTGGTAATCAGGGCAGAAATTAATTACAG  480

seq1  ATGGCACTGAAGAGTTTTGCTAGAGAAATTAATATCCAGGGCAATCATTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACTGAAGAGTTTTGCTAGAGAAATTAATATCCAGGGCAATCATTT  530

seq1  TCAGGTCAATCGGTGACATCTTGGCACAGGTCCCAAAGATTTCTTGTGTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCAATCGGTGACATCTTGGCACAGGTCCCAAAGATTTCTTGTGTA  580

seq1  TAAGGATAGCATATTACCTCTTTTGGATGTATGATTCTCTCAGTTATTTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATAGCATATTACCTCTTTTGGATGTATGATTCTCTCAGTTATTTC  630

seq1  TTGGATTCACGTTAGTATTTATGATATGTGAGATAAATTCCATCATAAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTCACGTTAGTATTTATGATATGTGAGATAAATTCCATCATAAAT  680

seq1  TCATTCCTACCTCAGTGCCAGACTGAACAACTACCAAACTCAAGCCTTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTACCTCAGTGCCAGACTGAACAACTACCAAACTCAAGCCTTTA  730

seq1  TCTCTGTTCCACTCTATGTATTCTAAACACAGGTTATTCTCATACAGTAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTCCACTCTATGTATTCTAAACACAGGTTATTCTCATACAGTAT  780

seq1  ACATGCCAAACAATTGAATGTCACACATTGCATGCACAATTTCTTAGCAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCAAACAATTGAATGTCACACATTGCATGCACAATTTCTTAGCAC  830

seq1  TAGGTAGGTGAATGATGTTGATCTGCAGAAATAGTAAAGACATTTATTAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGGTGAATGATGTTGATCTGCAGAAATAGTAAAGACATTTATTAG  880

seq1  TAAATTGCTAAGGGACATTAACTTACTGAACAACTTCTAAAATATTTCAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGCTAAGGGACATTAACTTACTGAACAACTTCTAAAATATTTCAG  930

seq1  TGAGTTCTAGTGCAAGCCCTTCCTATCTTTCATTTCTCCCTGAAAGCTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTAGTGCAAGCCCTTCCTATCTTTCATTTCTCCCTGAAAGCTTC  980

seq1  TGTGTACATCAGTTTGTGTCAGCCATTACTCATAATTCCATACATTTCCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACATCAGTTTGTGTCAGCCATTACTCATAATTCCATACATTTCCC  1030

seq1  AGTTCCCATTGGAATGGTATCATGGACTGCAACTGCAGCCACAGATGAAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCATTGGAATGGTATCATGGACTGCAACTGCAGCCACAGATGAAG  1080

seq1  GATGCTTTTAGTTAGCAGTGTCATAGGGAATCTAGGTGTGTGCAGTTTGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTTAGTTAGCAGTGTCATAGGGAATCTAGGTGTGTGCAGTTTGA  1130

seq1  GGGAGAATTC  1154
      ||||||||||
seq2  GGGAGAATTC  1140


seq1: chr9_5352939_5353933
seq2: B6Ng01-228H12.g_69_1071

seq1  GAATTCCTGAGTTTTGACCTTCTCCAAAGTGTAGTTTCATAGAAATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGTTTTGACCTTCTCCAAAGTGTAGTTTCATAGAAATTATT  50

seq1  CACAGAATGCCTTGTAACATTATTTTAACAAAACAGGAGTATTTCTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATGCCTTGTAACATTATTTTAACAAAACAGGAGTATTTCTTAAG  100

seq1  TGTTAGTCTGCGTGTCTCCATTAACTGGTATTCTAAGAGACACATAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTCTGCGTGTCTCCATTAACTGGTATTCTAAGAGACACATAAACT  150

seq1  CTGAGCCTTGAAATTTCCACAATCCAGAGAATAAACACATAAGATTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTTGAAATTTCCACAATCCAGAGAATAAACACATAAGATTTAAC  200

seq1  AATATCAGAACAAAATGCCTAATTATTGAAAGTTATACAAAGGTTGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGAACAAAATGCCTAATTATTGAAAGTTATACAAAGGTTGTGAT  250

seq1  CTCAGTTCTGTTCAAAGCAACCTGGGCAGATTTGATTAAACTATGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTCTGTTCAAAGCAACCTGGGCAGATTTGATTAAACTATGCAAAA  300

seq1  CTTGATATTGTTTGATGTGAAAAAATTTCACATTTCTAATTTTTTTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATTGTTTGATGTGAAAAAATTTCACATTTCTAATTTTTTTTAAC  350

seq1  ATAAACTTCTCTGTGTACCACTTCTTTCAATGTGAATTTTCCAAAACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTCTCTGTGTACCACTTCTTTCAATGTGAATTTTCCAAAACCTA  400

seq1  ATTGTATAAAAGTTAGTTTCTATTATATTCCATCTCTTATAGTCTGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATAAAAGTTAGTTTCTATTATATTCCATCTCTTATAGTCTGTAGA  450

seq1  AATCCAAGATTTTCCTTAAAACCATAGGAATGAAAACTATGTTTAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAGATTTTCCTTAAAACCATAGGAATGAAAACTATGTTTAAAAAA  500

seq1  AACAAACAAACAAAAAACAAAAAAAACTAATGTTCATAACATTTTCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAAAAACAAAAAAAACTAATGTTCATAACATTTTCAGAT  550

seq1  CTGATGTAAAAATATTACTTATCTTACTTCTTTGCCCAAATTGCTTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTAAAAATATTACTTATCTTACTTCTTTGCCCAAATTGCTTGACT  600

seq1  GATAGAAGTTATTTAGTTTTTGTGAACTCCCTTTGTTATTCAGATACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGTTATTTAGTTTTTGTGAACTCCCTTTGTTATTCAGATACAAA  650

seq1  CTTTATTTGGAGAATTCATTGGGTTTGACTCTAGAGTCTTTTTAGGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTGGAGAATTCATTGGGTTTGACTCTAGAGTCTTTTTAGGAAAT  700

seq1  GGAGACAGAG-TTAATGCAGTTTGCTGGCCGTCCAGAGCACCAG-TCCTC  748
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  GGAGACAGAGTTTAATGCAGTTTGCTGGCCGTCCAGAGCACCAGTTCCTC  750

seq1  AGACAGCACATTCCTGGTGTTTATGTCCCATGGCATCCTGGAAGGAATCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCACATTCCTGGTGTTTATGTCCCATGGCATCCTGGAAGGAATCT  800

seq1  GTGGGGTGAAGCACCGAAACAAAAAGCCAGATGTTCTTCATGATGACAC-  847
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGGGGTGAAGCACCGAAACAAAAAGCCAGATGTTCTTCATGATGACACT  850

seq1  TATCTTCAAAATTTT-CAACAACTCTAACTGTCGGAGTC-TGAGAAACAA  895
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  TATCTTCAAAATTTTCCAACAACTCTAACTGTCGGAGTCTTGAGAAACAA  900

seq1  A-CCCAAGATTCTCATCATGCAGGCCTGCAGAGGCAGTGAGTCAGAGTCA  944
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGATTCTCATCATGCAGGCCTGCAGAGGCAGTGAGTCAGAGTCA  950

seq1  GGGTTCTAGCATGT-GGTTCTAAACTTTCCTCTATGAGTCTGGCATG-CT  992
      |||||||||||||| ||||||||  || ||||||||| ||||||||| ||
seq2  GGGTTCTAGCATGTGGGTTCTAACTTTCCCTCTATGAATCTGGCATGCCT  1000

seq1  CCA  995
      |||
seq2  CCA  1003


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