BAC Information

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BAC

Clone NameB6Ng01-228J15
Chromosome9 (Build37)18 (Build37)
Map Location 46,407,122 - 46,408,1577,664,938 - 7,665,283
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722
Downstream geneEG667890, 2900052N01Rik, D930036J05, Cadm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228J15.bB6Ng01-228J15.g
ACCGA041974GA041975
length1,045330
definitionB6Ng01-228J15.b B6Ng01-228J15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,407,122 - 46,408,157)(7,664,938 - 7,665,283)
sequence
gaattcctggggggtgggggctggggaagcactccacactacagaggccc
tctccatggtgccccaaacttgaggagaactcaggctgggctggtatagg
cctctaggggtggggcatattctgggcaagaaaataatagaaggcccttt
ctaggggtcttagtgcaaaccaagagggcagagacaggactccaagtgtg
caagttgccaactaagctgagatctaaaggtatgcagtcaggggtagaag
agtctgatagattgtgtgacctgcagacctcagccctgttccacacaacc
tgagattcccattgaagacctaaacccccaggttctaaaaacacaggact
ggaccaaagaaaaaggtgagtctaagattggattcagttgctatagactc
aacaaatattgtgcccaaagatccaataactcctaagtcatggccttggt
accaccaaaggacaagaaacagtcatctgtacaagacatagtggtgcaca
cttgtctgtactttcaatactagaaggctgtggtggagagtggtaagttt
cagggtcagcctgggcaacattatgagttcttcagcaacccaacaccacc
ttgtctcaaaaatcccaatgcaaactatataaataaaatggctaccttct
tccgcccagtaactgactcccacagctcacagtagagacaaagtcctcag
ggaagtaggtctcctgctgtattaagggtgctttccaactttaccctgaa
gtccccagggtggccgtggctattttctgtcctctgaaaagctgagatca
agttagactgttacataaaaacttgatgaagttctcagttaaagacttcg
attaattccaaccaaagacggttgcctttgagagctcacagtgagccttc
tgagatgctttcccaacattgagggcctcttaggctggttcttcttacca
agctactgcattcctggggctcccaggactctagaggttcatatgaggtg
agtgaaggtagggtttcccccaacactgttggtttcctctgcttc
cttcagtcctgtccacatgttgtccacgaccgctcttgccccaggcatga
ggcacccactgcctgccctggcccttatgggtttgtccattctagaaata
ttcatgtaaatagaaatgtgtgagccacagtcttgtgtctgtctctggcc
tcatagtaatgttgaggtttgtggtggtttgaatatgcttggcccagaga
gtagcactatttggaggtgtggccttgttggaggaagtgagtcactgtgg
gggtgggctttgagagtctcctcctagtcttatgggagacagtcttttgt
ttgcctttggaacaagatgtagaactctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_46407122_46408157
seq2: B6Ng01-228J15.b_49_1093 (reverse)

seq1  GAAGC--AGGGAACCAACAGTGTTGGGGGAAACCCTACC-TCACTCACCT  47
      |||||  ||| |||||||||||||||||||||||||||| ||||||||||
seq2  GAAGCAGAGGAAACCAACAGTGTTGGGGGAAACCCTACCTTCACTCACCT  50

seq1  CATACTGAACCTCTAGAGTCCTGGGAGCCCC-GGAATGCAGTAGCTTTGG  96
      |||| |||||||||||||||||||||||||| ||||||||||||| ||||
seq2  CATA-TGAACCTCTAGAGTCCTGGGAGCCCCAGGAATGCAGTAGC-TTGG  98

seq1  TAAGGAAGACCAGCCT-AGAGG-CCTCAATGTTGGGAAAGCATCTCAGAA  144
      |||| |  |||||||| ||||| |||||||||||||||||||||||||||
seq2  TAAGAAGAACCAGCCTAAGAGGCCCTCAATGTTGGGAAAGCATCTCAGAA  148

seq1  GGCTCACTGTGAGCTCTCAAAGGCAACCGTC-TTGGTTGGAATTAATCGA  193
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCTCACTGTGAGCTCTCAAAGGCAACCGTCTTTGGTTGGAATTAATCGA  198

seq1  GGTCTTT-ACTGAGAACTTCATCAAG-TTTTATGTAAACAGTCTAACTTG  241
       |||||| |||||||||||||||||| |||||||| ||||||||||||||
seq2  AGTCTTTAACTGAGAACTTCATCAAGTTTTTATGT-AACAGTCTAACTTG  247

seq1  ATCTCAGCTTTTCAGAGGACAGAAAATAGCCACGGCCACCCTGGGGACTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGCTTTTCAGAGGACAGAAAATAGCCACGGCCACCCTGGGGACTT  297

seq1  CAGGGTAAAGTTGG-AAGCACCCTTAATACAGCAGGAGACCTACTTCCCT  340
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGGGTAAAGTTGGAAAGCACCCTTAATACAGCAGGAGACCTACTTCCCT  347

seq1  GAGGAC-TTGTCTCTACTGTGAGCTGTGGGAGTCAGTTACTGGGCGGAAG  389
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTTTGTCTCTACTGTGAGCTGTGGGAGTCAGTTACTGGGCGGAAG  397

seq1  AAGGTAGCCATTTTATTTATATAGTTTGCATTGGGATTTTTGAGACAAGG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGCCATTTTATTTATATAGTTTGCATTGGGATTTTTGAGACAAGG  447

seq1  TGGTGTTGGGTTGCTGAAGAACTCATAATGTTGCCCAGGCTGACCCTG-A  488
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGTGTTGGGTTGCTGAAGAACTCATAATGTTGCCCAGGCTGACCCTGAA  497

seq1  ACTTACCACTCTCCACCACAGCCTTCTAGTATTGAAAGTACAGACAAGTG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCACTCTCCACCACAGCCTTCTAGTATTGAAAGTACAGACAAGTG  547

seq1  TGCACCACTATGTCTTGTACAGATGACTGTTTCTTGTCCTTTGGTGGTAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACTATGTCTTGTACAGATGACTGTTTCTTGTCCTTTGGTGGTAC  597

seq1  CAAGGCCATGACTTAGGAGTTATTGGATCTTTGGGCACAATATTTGTTGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCATGACTTAGGAGTTATTGGATCTTTGGGCACAATATTTGTTGA  647

seq1  GTCTATAGCAACTGAATCCAATCTTAGACTCACCTTTTTCTTTGGTCCAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATAGCAACTGAATCCAATCTTAGACTCACCTTTTTCTTTGGTCCAG  697

seq1  TCCTGTGTTTTTAGAACCTGGGGGTTTAGGTCTTCAATGGGAATCTCAGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTTTTTAGAACCTGGGGGTTTAGGTCTTCAATGGGAATCTCAGG  747

seq1  TTGTGTGGAACAGGGCTGAGGTCTGCAGGTCACACAATCTATCAGACTCT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGAACAGGGCTGAGGTCTGCAGGTCACACAATCTATCAGACTCT  797

seq1  TCTACCCCTGACTGCATACCTTTAGATCTCAGCTTAGTTGGCAACTTGCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCCTGACTGCATACCTTTAGATCTCAGCTTAGTTGGCAACTTGCA  847

seq1  CACTTGGAGTCCTGTCTCTGCCCTCTTGGTTTGCACTAAGACCCCTAGAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGAGTCCTGTCTCTGCCCTCTTGGTTTGCACTAAGACCCCTAGAA  897

seq1  AGGGCCTTCTATTATTTTCTTGCCCAGAATATGCCCCACCCCTAGAGGCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTTCTATTATTTTCTTGCCCAGAATATGCCCCACCCCTAGAGGCC  947

seq1  TATACCAGCCCAGCCTGAGTTCTCCTCAAGTTTGGGGCACCATGGAGAGG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAGCCCAGCCTGAGTTCTCCTCAAGTTTGGGGCACCATGGAGAGG  997

seq1  GCCTCTGTAGTGTGGAGTGCTTCCCCAGCCCCCACCCCCCAGGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTAGTGTGGAGTGCTTCCCCAGCCCCCACCCCCCAGGAATTC  1045

seq1: chr18_7664938_7665283
seq2: B6Ng01-228J15.g_250_406 (reverse)

seq1  TGAGAGTTCTACATCTTCATCTGAAGGCTGCTAGCAGAATACAGAGTTCC  50
      |||||||||||||||||  ||  |||   || | || || || |  | ||
seq2  TGAGAGTTCTACATCTTGTTCCAAAG---GCAAACAAAAGACTGTCTCCC  47

seq1  AGTTAG-CTAAAACTAGGGTATAAAAGCCCACACCCACAGTGACACACCT  99
      | | || |||  |  ||  | | ||||||||| ||||||||||| ||| |
seq2  A-TAAGACTAGGAGGAGACTCTCAAAGCCCACCCCCACAGTGACTCACTT  96

seq1  ACTTCAACAAGACCACACCTCCAAATTATGCTACTTCCTGGGCCAAGCAT  149
       || ||||||| ||||||||||||||  |||||||  |||||||||||||
seq2  CCTCCAACAAGGCCACACCTCCAAATAGTGCTACTCTCTGGGCCAAGCAT  146

seq1  ATTCA------CTTTTTTTGTTCGTTTGTTTTGTTTTGTTTTTCGAGACA  193
      |||||                                             
seq2  ATTCAAACCAC---------------------------------------  157

seq1  GTGTTTCTCTGTGTAGCCTTGGCTGTCCTGGGATTCACTTTGTAGACCAG  243
                                                        
seq2  --------------------------------------------------  157

seq1  GCTGGCCTTGAATTCAGAAATCTGCCTGCTTCTGCCTCCCAAGTGCTGGG  293
                                                        
seq2  --------------------------------------------------  157

seq1  ATTAAAGGCGTGTGCCACCACTGCCTGGCTTGGGCCAAGCATATTCAAAC  343
                                                        
seq2  --------------------------------------------------  157

seq1  CAC  346
         
seq2  ---  157