BAC Information

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BAC

Clone NameB6Ng01-229F09
Chromosome9 (Build37)
Map Location 71,720,388 - 71,846,835
singlet/doubletdoublet
Overlap geneTcf12
Upstream geneLipc, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
Downstream geneEG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229F09.bB6Ng01-229F09.g
ACCGA042514GA042515
length1,0201,049
definitionB6Ng01-229F09.b B6Ng01-229F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,720,388 - 71,721,416)(71,845,782 - 71,846,835)
sequence
gaattcacttgttaaaatttattgaacaattaaaagcagcaagctaggta
gtgaccagggttcgagctgaattatttctgggaataatgtaaatgtatgc
agtgtttctgatctgctcttactctcatcagggctttagggaatagaact
ggttcataaactaagagaatggacacaccctcctgtatagctcagggtac
ttctaggctttagttcattcgctagttctctctttctcttgtttctaaga
caatgtcttactatgtacctgtgggtggcctggaacttgctatgtagacc
aggctggcttcaaactcatagagatccacctgtcttctgcctcctgagtg
cacaacttgtggctccagttatttctcttacttcaggcccccaatagttt
ctctttgtaacctcaccctaaactcaagccttcatgggcctccatcttac
cctactggaatcctaatgttacagtttaccacaacacagccagtcaccct
ctcggtaaatgactagaagaggagggcaggcactttctcctatgcagatc
tgtactgtgctcttccctttatactcacaaaaaccactttcctcttatta
aatttcatttcatgaagcctgtgccctaacttgaccacaactcagtgtca
attctgtggctttattttcattgtattttctcatctcgactggaaacttg
ctcaagtaaggcgagtattttacactgggcatgctcatagacgatgtaca
caacataatgttttgattaaactaacataaacttagactcaacttttagt
atgaggttctgaggactggtacaaggttctaacattacagacattcccca
cctaaattccatatgaaggtaaagaaagtcaaggaatgttctgcttgcct
gcctcccaagctccataccgaacatattcgctaacataaatgttgtgcca
cttccgaactgtagcagcatagccatttcccttcactgtgcaaagtacta
agtctgttcaaggctgaagg
gaattcatgactcctcttgattcagctttcctcatagatgtgacccacac
cctctgcagttacctcacatgcacagatatggacctacgccactattaaa
attgtggtaaataaatgaagtctttaggatatatgtatgtatatgtatat
gcatatgtatatgtatatatgccatttcagagcatctgttaactaaaaac
tacttctctaattcagtttgaggttctgtttcctcatttggagcctttat
ggacatgcatttgttcttttttctgtttttggagaattattagagtacct
ttaaaggttatccctactctgtaaaatctacatttaaagtaagtctataa
gagtaagattagtgaacaggctgatttcttcactgttcaaatgaacaaaa
attctcatttatgtgacctacctagtgcagtgagtctggtacgactatac
agaatgtgttttatctactgtatttaaactgcccaattttaaagtatttt
acatttaaaggggatggggagaaataaccttgcagtgattgattaggtgc
atgcatcaaaaagcattccttacctttattgttagtaaaatgattgtatg
aatatctcagtatggcaccttacactaagtgatgtgcatagcaggaactt
gcttttggaaatgaatatttcttgtagtgcagtaggcaatcagtaagatg
tgagatgcagtggttgaactgctaagaacccaaatatatcgatgttagta
ctggatgaagttacaagagtctcttttctagatgtagtagtattaaaggg
attttcagtggtagaaacacttttagagctctctgctggtgtgtgtgtgg
tgttttgagaaacactgaaccattgatacctgattccttgcacagttaaa
gagatgagaggagcagaaaacagaagtgtcattgctgctagcatactata
gcattaaacagaaggagaaattattcattctaggatatgttattcttgat
attatggtgatctggtaatacatgggtctggagaagaatagatgataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_71720388_71721416
seq2: B6Ng01-229F09.b_45_1064

seq1  GAATTCACTTGTTAAAATTTATTGAACAATTAAAAGCAGCAAGCTAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGTTAAAATTTATTGAACAATTAAAAGCAGCAAGCTAGGTA  50

seq1  GTGACCAGGGTTCGAGCTGAATTATTTCTGGGAATAATGTAAATGTATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAGGGTTCGAGCTGAATTATTTCTGGGAATAATGTAAATGTATGC  100

seq1  AGTGTTTCTGATCTGCTCTTACTCTCATCAGGGCTTTAGGGAATAGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCTGATCTGCTCTTACTCTCATCAGGGCTTTAGGGAATAGAACT  150

seq1  GGTTCATAAACTAAGAGAATGGACACACCCTCCTGTATAGCTCAGGGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATAAACTAAGAGAATGGACACACCCTCCTGTATAGCTCAGGGTAC  200

seq1  TTCTAGGCTTTAGTTCATTCGCTAGTTCTCTCTTTCTCTTGTTTCTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGCTTTAGTTCATTCGCTAGTTCTCTCTTTCTCTTGTTTCTAAGA  250

seq1  CAATGTCTTACTATGTACCTGTGGGTGGCCTGGAACTTGCTATGTAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTTACTATGTACCTGTGGGTGGCCTGGAACTTGCTATGTAGACC  300

seq1  AGGCTGGCTTCAAACTCATAGAGATCCACCTGTCTTCTGCCTCCTGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCTTCAAACTCATAGAGATCCACCTGTCTTCTGCCTCCTGAGTG  350

seq1  CACAACTTGTGGCTCCAGTTATTTCTCTTACTTCAGGCCCCCAATAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTGTGGCTCCAGTTATTTCTCTTACTTCAGGCCCCCAATAGTTT  400

seq1  CTCTTTGTAACCTCACCCTAAACTCAAGCCTTCATGGGCCTCCATCTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTAACCTCACCCTAAACTCAAGCCTTCATGGGCCTCCATCTTAC  450

seq1  CCTACTGGAATCCTAATGTTACAGTTTACCACAACACAGCCAGTCACCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGGAATCCTAATGTTACAGTTTACCACAACACAGCCAGTCACCCT  500

seq1  CTCGGTAAATGACTAGAAGAGGAGGGCAGGCACTTTCTCCTATGCAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTAAATGACTAGAAGAGGAGGGCAGGCACTTTCTCCTATGCAGATC  550

seq1  TGTACTGTGCTCTTCCCTTTATACTCACAAAAACCACTTTCCTCTTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTGCTCTTCCCTTTATACTCACAAAAACCACTTTCCTCTTATTA  600

seq1  AATTTCATTTCATGAAGCCTGTGCCCTAACTTGACCACAACTCAGTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTTCATGAAGCCTGTGCCCTAACTTGACCACAACTCAGTGTCA  650

seq1  ATTCTGTGGCTTTATTTTCATTGTATTTTCTCATCTCGACTGGAAACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGGCTTTATTTTCATTGTATTTTCTCATCTCGACTGGAAACTTG  700

seq1  CTCAAGTAAGGCGAGTATTTTACACTGGGCATGCTCATAGACGATGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTAAGGCGAGTATTTTACACTGGGCATGCTCATAGACGATGTACA  750

seq1  CAACATAATGTTTTGATTAAACTAACATAAACTTAGACTCAACTTTTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATAATGTTTTGATTAAACTAACATAAACTTAGACTCAACTTTTAGT  800

seq1  ATGAGGTTCTGAGGACTGGTACAAGGTTCTAACATTACAGACATTCCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTTCTGAGGACTGGTACAAGGTTCTAACATTACAGACATTCCCCA  850

seq1  CCTAAATTCCATATGAAGGTAAAGAAAGTCAAGGAATGTTCTGCTTGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATTCCATATGAAGGTAAAGAAAGTCAAGGAATGTTCTGCTTGCCT  900

seq1  GCCTCCCAAGCTCCCATACCGAACATATTCGCCTAACATAAATGTTGTGC  950
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  GCCTCCCAAGCT-CCATACCGAACATATTCG-CTAACATAAATGTTGTGC  948

seq1  CACTTCCGAACTGTAGCAGGCATAGCCATTTCCCTTTCACCTTGTTGCCA  1000
      |||||||||||||||||| ||||||||||||||| |||||  ||    ||
seq2  CACTTCCGAACTGTAGCA-GCATAGCCATTTCCC-TTCACTGTG----CA  992

seq1  AAGTACTAAGTCTGTTCAAGGGCTGAAGG  1029
      ||||||||||||||||||| |||||||||
seq2  AAGTACTAAGTCTGTTCAA-GGCTGAAGG  1020

seq1: chr9_71845782_71846835
seq2: B6Ng01-229F09.g_64_1112 (reverse)

seq1  TTTATCATCTATTCTTTCTCCAGACAAATGTATTTACAGATCAACATAAT  50
      |||||||||||||| ||||||||||  |||||||  ||||||| ||||||
seq2  TTTATCATCTATTC-TTCTCCAGACCCATGTATTACCAGATCACCATAAT  49

seq1  AATTAAAAGAATAACATATCCTAG-ATGAATAATTTCTCTTCTTGTTTAA  99
      |     |||||||||||||||||| |||||||||||||| |  |||||||
seq2  A---TCAAGAATAACATATCCTAGAATGAATAATTTCTCCTTCTGTTTAA  96

seq1  TGCTTATTAGTATGCTGGCAGCAATGACAACTTCTGTTTTCTGCTCCTCT  149
      ||||   ||||||||| ||||||||||| |||||||||||||||||||||
seq2  TGCT--ATAGTATGCTAGCAGCAATGAC-ACTTCTGTTTTCTGCTCCTCT  143

seq1  CTTCTCTTTAACTGTTGCAGGAATCAGGTATCAATGGTTCAGTGTTTCTC  199
      | |||||||||||||   ||||||||||||||||||||||||||||||||
seq2  CATCTCTTTAACTGTGCAAGGAATCAGGTATCAATGGTTCAGTGTTTCTC  193

seq1  AAAACACCACACACACACCAGCAGAGAGCTCTAAAAGTGTTTCTACCACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCACACACACACCAGCAGAGAGCTCTAAAAGTGTTTCTACCACT  243

seq1  GAAAATCCC-TTAATACTACTACATCTAGAAAAGAGACTCTTGTAACTTC  298
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCCCTTTAATACTACTACATCTAGAAAAGAGACTCTTGTAACTTC  293

seq1  ATCCAGTACTAACATCGATATATTTGGGTTCTTAGCAGTTCAACCACTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTACTAACATCGATATATTTGGGTTCTTAGCAGTTCAACCACTGC  343

seq1  ATCTCACATCTTACTGATTGCCTACTGCACTACAAGAAATATTCATTTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACATCTTACTGATTGCCTACTGCACTACAAGAAATATTCATTTCC  393

seq1  AAAAGCAAGTTCCTGCTATGCACATCACTTAGTGTAAGGTGCCATACTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAGTTCCTGCTATGCACATCACTTAGTGTAAGGTGCCATACTGA  443

seq1  GATATTCATACAATCATTTTACTAACAATAAAGGTAAGGAATGCTTTTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCATACAATCATTTTACTAACAATAAAGGTAAGGAATGCTTTTTG  493

seq1  ATGCATGCACCTAATCAATCACTGCAAGGTTATTTCTCCCCATCCCCTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCACCTAATCAATCACTGCAAGGTTATTTCTCCCCATCCCCTTT  543

seq1  AAATGTAAAATACTTTAAAATTGGGCAGTTTAAATACAGTAGATAAAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAAATACTTTAAAATTGGGCAGTTTAAATACAGTAGATAAAACA  593

seq1  CATTCTGTATAGTCGTACCAGACTCACTGCACTAGGTAGGTCACATAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTATAGTCGTACCAGACTCACTGCACTAGGTAGGTCACATAAAT  643

seq1  GAGAATTTTTGTTCATTTGAACAGTGAAGAAATCAGCCTGTTCACTAATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTTTGTTCATTTGAACAGTGAAGAAATCAGCCTGTTCACTAATC  693

seq1  TTACTCTTATAGACTTACTTTAAATGTAGATTTTACAGAGTAGGGATAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTATAGACTTACTTTAAATGTAGATTTTACAGAGTAGGGATAAC  743

seq1  CTTTAAAGGTACTCTAATAATTCTCCAAAAACAGAAAAAAGAACAAATGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGGTACTCTAATAATTCTCCAAAAACAGAAAAAAGAACAAATGC  793

seq1  ATGTCCATAAAGGCTCCAAATGAGGAAACAGAACCTCAAACTGAATTAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCATAAAGGCTCCAAATGAGGAAACAGAACCTCAAACTGAATTAGA  843

seq1  GAAGTAGTTTTTAGTTAACAGATGCTCTGAAATGGCATATATACATATAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGTTTTTAGTTAACAGATGCTCTGAAATGGCATATATACATATAC  893

seq1  ATATGCATATACATATACATACATATATCCTAAAGACTTCATTTATTTAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATATACATATACATACATATATCCTAAAGACTTCATTTATTTAC  943

seq1  CACAATTTTAATAGTGGCGTAGGTCCATATCTGTGCATGTGAGGTAACTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTTAATAGTGGCGTAGGTCCATATCTGTGCATGTGAGGTAACTG  993

seq1  CAGAGGGTGTGGGTCACATCTATGAGGAAAGCTGAATCAAGAGGAGTCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGTGTGGGTCACATCTATGAGGAAAGCTGAATCAAGAGGAGTCAT  1043

seq1  GAATTC  1054
      ||||||
seq2  GAATTC  1049