BAC Information

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BAC

Clone NameB6Ng01-229F19
Chromosome9 (Build37)
Map Location 81,244,163 - 81,356,748
singlet/doubletdoublet
Overlap genenone
Upstream geneImpg1, EG666534
Downstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik, LOC100039085
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229F19.bB6Ng01-229F19.g
ACCGA042532GA042533
length1,0881,129
definitionB6Ng01-229F19.b B6Ng01-229F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,355,670 - 81,356,748)(81,244,163 - 81,245,321)
sequence
gaattctaagcacacatttcatcattctgctatatcccccagactacttt
ttattgtctgtctgtctgtctgtctgtctatctatctatctatctatcta
tctatctatctatctatctatctatctatctatctgtaggcggggctaat
ttgacagggctctgagcaacacttaggtttaaagtgtttttaaagtttat
ataacttgacataatatgtttttctctaaggatatttaattcttttgttt
ccttcctgtttaatttcttaggatttgtagggtttattatggatattctg
taccttttgactaatatccacttatcagtgagtacataccatacatgtct
ctttgggtctgggttacctcattcaggatgatattgtctagttgcattca
cttgcctgaaaaaaatccctgttcttgttttaaatagctgatttgtatac
cattgtgtaaatgaaaaacattttctgtatccattcttagttgagggaca
tctgggtttgcttctagtttctggctattacagataaggctgccatgaaa
acagtgaattatgtattcttgccatatgctggagcatcttttgggtatat
gtccaggaatagtatatatgggttagaattatttccatttttctgaggat
caatttccagaatggctatacaagtttgcaatcccaccagcaatggagga
gtgtttctctttctctacatcttcatcagcatctgctgtcatttgagttt
ttgatcttagccattacaattggtgtaaggtaaaatctcagagtcaattt
gtttgaatttccccgatgtctaagtatgtttgaacattaacgtgcttcta
ggccattcagattcctctgtttggaattgctctgtttagtttttgttccc
tacaagtgaggtaaactgggaaactaactttcaaaagaattgattatatt
tttttaaaaagataaagatttttgacttttatataacccatgagatatgt
tggcaaagtcataggtatgtgactgccagtatagaatcatataaaactaa
tcttcttagaaaaatccctgatctttaccacattagtc

gaattcattcctaggaattcaatcttcctgttgtacatgaaaatctctgc
ttctttgctcctcattctctcctttgtactctgacctggacagaatatga
gacaagtctcctatttgtgaaggcattgtacaaaaatgtaagagaaataa
gtttgcagtttactttgcaagttcatgtctgctttatgaataaggaacca
tgttctgcatcatgttcagggtttattttccaggattcaatcagaatttt
taattatactgattatagaaattgtgggtcagtgccctcatacttgatct
gtggactgcttctttgtattacacacatctccataagtattttaatcaac
aaatcatatttctcaaaagctagtcattttcacccatttctttatttttt
atttttattttttattaatcattttattcatttgcattccacatgatatg
ccccttccaggttatacctgcacaattccccatctcatccccctccccct
cccctttgcctccatgagggtgttcctccgcctactcacccactcctgcc
tcacccctgtagcctcccactacactgggacatcaagcctccctcccctc
ccattgatgtcagacaaggccatcctctactacatacatatctggtgtca
tggctcattccaggtatactctttggttagtgaattagtccatgggagct
ctggattatctagttagtcgatgttgttcttcctatggggttgcaatccc
cttcagctccttcagtccctcccctggctcttcactggagtccccagact
caatctaatggttggccatgagttaactgcatctgtattggtcaggtagc
acctctcatgaaacacttataccaggctcctgtccacaagcatgtcttga
catcagcaatagtatgggagtttggtgactgcaaatgatgatccctagta
gggcagtctctggatgctttctcagactctgttcattttttatccctgtt
ctttctttgcacagaaatttctgggtaaaattttgagatggattgtgtcc
atccccactgtgacggtccttctacgagagctgactgataacaacattgc
agtaatatttattcttgctctatagttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_81355670_81356748
seq2: B6Ng01-229F19.b_46_1133 (reverse)

seq1  GACTAATGT-GTTAAGATCAGG--ATTTTCTAAGAAGATTAGTTTT-TAT  46
      ||||||||| || |||||||||   ||||||||||||||||||||| |||
seq2  GACTAATGTGGTAAAGATCAGGGATTTTTCTAAGAAGATTAGTTTTATAT  50

seq1  GATTCTATACCTGCAGTCACATACCTATGACTTTGCCAACATATTCTCAT  96
      ||||||||||  ||||||||||||||||||||||||||||||| ||||||
seq2  GATTCTATACTGGCAGTCACATACCTATGACTTTGCCAACATA-TCTCAT  99

seq1  TGGTTATATAAATGTCAAAAATCTTTATCTTTTT-AAAAAATAT-ATC-A  143
       ||||||||||| ||||||||||||||||||||| ||||||||| ||| |
seq2  GGGTTATATAAAAGTCAAAAATCTTTATCTTTTTAAAAAAATATAATCAA  149

seq1  TTCTTTTGAAAGTTAGTTT-CCAGTTTACCTCACTTGTAGGGAAC-AAAA  191
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  TTCTTTTGAAAGTTAGTTTCCCAGTTTACCTCACTTGTAGGGAACAAAAA  199

seq1  CTAAACAGAGC-ATTCCAAACAGAGGAATCTTGAATGGCCTAGAAGCACG  240
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  CTAAACAGAGCAATTCCAAACAGAGGAATC-TGAATGGCCTAGAAGCACG  248

seq1  TTAATGTTC-AACATACTTAGACATCGGGGAAATTCAAACAAATTGACTC  289
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTCAAACATACTTAGACATCGGGGAAATTCAAACAAATTGACTC  298

seq1  TGAGATTTTACCTTACACCAATTGTAATGGCTAAGATCAAAAACTCAAAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTACCTTACACCAATTGTAATGGCTAAGATCAAAAACTCAAAT  348

seq1  GACAGCAGATGCTGATGAAGATGTAGAGAAAGAGAAACACTCCTCCATTG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGATGCTGATGAAGATGTAGAGAAAGAGAAACACTCCTCCATTG  398

seq1  CTGGTGGGATTGCAAACTTGTATAGCCATTCTGGAAATTGATCCTCAGAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGGATTGCAAACTTGTATAGCCATTCTGGAAATTGATCCTCAGAA  448

seq1  AAATGGAAATAATTCTAACCCATATATACTATTCCTGGACATATACCCAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAATAATTCTAACCCATATATACTATTCCTGGACATATACCCAA  498

seq1  AAGATGCTCCAGCATATGGCAAGAATACATAATTCACTGTTTTCATGGCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTCCAGCATATGGCAAGAATACATAATTCACTGTTTTCATGGCA  548

seq1  GCCTTATCTGTAATAGCCAGAAACTAGAAGCAAACCCAGATGTCCCTCAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATCTGTAATAGCCAGAAACTAGAAGCAAACCCAGATGTCCCTCAA  598

seq1  CTAAGAATGGATACAGAAAATGTTTTTCATTTACACAATGGTATACAAAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATGGATACAGAAAATGTTTTTCATTTACACAATGGTATACAAAT  648

seq1  CAGCTATTTAAAACAAGAACAGGGATTTTTTTCAGGCAAGTGAATGCAAC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTTAAAACAAGAACAGGGATTTTTTTCAGGCAAGTGAATGCAAC  698

seq1  TAGACAATATCATCCTGAATGAGGTAACCCAGACCCAAAGAGACATGTAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAATATCATCCTGAATGAGGTAACCCAGACCCAAAGAGACATGTAT  748

seq1  GGTATGTACTCACTGATAAGTGGATATTAGTCAAAAGGTACAGAATATCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTACTCACTGATAAGTGGATATTAGTCAAAAGGTACAGAATATCC  798

seq1  ATAATAAACCCTACAAATCCTAAGAAATTAAACAGGAAGGAAACAAAAGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAACCCTACAAATCCTAAGAAATTAAACAGGAAGGAAACAAAAGA  848

seq1  ATTAAATATCCTTAGAGAAAAACATATTATGTCAAGTTATATAAACTTTA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATCCTTAGAGAAAAACATATTATGTCAAGTTATATAAACTTTA  898

seq1  AAAACACTTTAAACCTAAGTGTTGCTCAGAGCCCTGTCAAATTAGCCCCG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTTTAAACCTAAGTGTTGCTCAGAGCCCTGTCAAATTAGCCCCG  948

seq1  CCTACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA  998

seq1  GATAGATAGATAGACAGACAGACAGACAGACAGACAATAAAAAGTAGTCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGACAGACAGACAGACAGACAGACAATAAAAAGTAGTCT  1048

seq1  GGGGGATATAGCAGAATGATGAAATGTGTGCTTAGAATTC  1079
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATATAGCAGAATGATGAAATGTGTGCTTAGAATTC  1088


seq1: chr9_81244163_81245321
seq2: B6Ng01-229F19.g_66_1194

seq1  GAATTCATTCCTAGGAATTCAATCTTCCTGTTGTACATGAAAATCTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTAGGAATTCAATCTTCCTGTTGTACATGAAAATCTCTGC  50

seq1  TTCTTTGCTCCTCATTCTCTCCTTTGTACTCTGACCTGGACAGAATATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCTCCTCATTCTCTCCTTTGTACTCTGACCTGGACAGAATATGA  100

seq1  GACAAGTCTCCTATTTGTGAAGGCATTGTACAAAAATGTAAGAGAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTCTCCTATTTGTGAAGGCATTGTACAAAAATGTAAGAGAAATAA  150

seq1  GTTTGCAGTTTACTTTGCAAGTTCATGTCTGCTTTATGAATAAGGAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGTTTACTTTGCAAGTTCATGTCTGCTTTATGAATAAGGAACCA  200

seq1  TGTTCTGCATCATGTTCAGGGTTTATTTTCCAGGATTCAATCAGAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGCATCATGTTCAGGGTTTATTTTCCAGGATTCAATCAGAATTTT  250

seq1  TAATTATACTGATTATAGAAATTGTGGGTCAGTGCCCTCATACTTGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATACTGATTATAGAAATTGTGGGTCAGTGCCCTCATACTTGATCT  300

seq1  GTGGACTGCTTCTTTGTATTACACACATCTCCATAAGTATTTTAATCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTGCTTCTTTGTATTACACACATCTCCATAAGTATTTTAATCAAC  350

seq1  AAATCATATTTCTCAAAAGCTAGTCATTTTCACCCATTTCTTTATTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATATTTCTCAAAAGCTAGTCATTTTCACCCATTTCTTTATTTTTT  400

seq1  ATTTTTATTTTTTATTAATCATTTTATTCATTTGCATTCCACATGATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTTTTATTAATCATTTTATTCATTTGCATTCCACATGATATG  450

seq1  CCCCTTCCAGGTTATACCTGCACAATTCCCCATCTCATCCCCCTCCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCAGGTTATACCTGCACAATTCCCCATCTCATCCCCCTCCCCCT  500

seq1  CCCCTTTGCCTCCATGAGGGTGTTCCTCCGCCTACTCACCCACTCCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTGCCTCCATGAGGGTGTTCCTCCGCCTACTCACCCACTCCTGCC  550

seq1  TCACCCCTGTAGCCTCCCACTACACTGGGACATCAAGCCTCCCTCCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCTGTAGCCTCCCACTACACTGGGACATCAAGCCTCCCTCCCCTC  600

seq1  CCATTGATGTCAGACAAGGCCATCCTCTACTACATACATATCTGGTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGATGTCAGACAAGGCCATCCTCTACTACATACATATCTGGTGTCA  650

seq1  TGGCTCATTCCAGGTATACTCTTTGGTTAGTGAATTAGTCCATGGGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATTCCAGGTATACTCTTTGGTTAGTGAATTAGTCCATGGGAGCT  700

seq1  CTGGATTATCTAGTTAGTCGATGTTGTTCTTCCTATGGGGTTGCAATCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTATCTAGTTAGTCGATGTTGTTCTTCCTATGGGGTTGCAATCCC  750

seq1  CTTCAGCTCCTTCAGTCCCTCCCCTGGCTCTTCACTGGAGTCCCCAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTCCTTCAGTCCCTCCCCTGGCTCTTCACTGGAGTCCCCAGACT  800

seq1  CAATCTAATGGTTGGCCATGAGTTAACTGCATCTGTATTGGTCAGGTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTAATGGTTGGCCATGAGTTAACTGCATCTGTATTGGTCAGGTAGC  850

seq1  ACCTCTCATGAAACACTTATACCAGGCTCCTGTCCACAAGCATGTCTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCATGAAACACTTATACCAGGCTCCTGTCCACAAGCATGTCTTGA  900

seq1  CATCAGCAATAGTATGGGAGTTTGGTGACTGCAAATGGAATGGATCCCTA  950
      |||||||||||||||||||||||||||||||||||||  || ||||||||
seq2  CATCAGCAATAGTATGGGAGTTTGGTGACTGCAAATG--AT-GATCCCTA  947

seq1  GGTAGGGCAGTCTCTGGATGGCCTTTCCTTCAGACTCTGTTCCATTTTTT  1000
       |||||||||||||||||||  |||||  |||||||||||| ||||||||
seq2  -GTAGGGCAGTCTCTGGATG--CTTTC--TCAGACTCTGTT-CATTTTTT  991

seq1  ATCCCTGTCTTTCCTTTGCACAGGAAAATTTCTGGGTTAAAAATTTTGAG  1050
      ||||||||  || ||||||||||  ||||||||||||  |||||||||||
seq2  ATCCCTGTTCTTTCTTTGCACAG--AAATTTCTGGGT--AAAATTTTGAG  1037

seq1  ATGAATGGTTGGTCCCATCCCCCAACTGTGAACCGTTCCTTTCTACGGGA  1100
      ||| || ||  || ||||||||  |||||||  || ||| ||||||| | 
seq2  ATGGATTGT--GT-CCATCCCC--ACTGTGA--CGGTCC-TTCTACGAG-  1078

seq1  GGGAAGCTGGACTGATAAACAACATTTCCAGTAATATTTTATTCTTGCTC  1150
          |||| ||||||| ||||||| || |||||||| |||||||||||||
seq2  ----AGCT-GACTGAT-AACAACA-TTGCAGTAATA-TTTATTCTTGCTC  1120

seq1  TATAATTAC  1159
      |||| ||||
seq2  TATAGTTAC  1129


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