BAC Information

Click to search

BAC

Clone NameB6Ng01-229P09
Chromosome9 (Build37)
Map Location 51,521,720 - 51,640,412
singlet/doubletdoublet
Overlap geneArhgap20
Upstream geneDixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070
Downstream geneLOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876, AI593442, Gm1715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229P09.bB6Ng01-229P09.g
ACCGA042951GA042952
length1,1791,044
definitionB6Ng01-229P09.b B6Ng01-229P09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,521,720 - 51,522,905)(51,639,368 - 51,640,412)
sequence
gaattcctttatagataacctcaatcctatttctaggaccaaagcagctc
acttgtgtccacccttctctcagaagattagattatatctccaagatagc
caagaagtagtccctagtgaggtgtggacaggtgaacaggcttgcacatg
aagatgtcaactgaccgcctctgaagatgctttcctgacatgaggcacaa
gggggcacagtacaggctgatggtatctccaagttgccatgttccacagc
tcccccctccccctgcactccaagatgtacactaaaatcccaagttattt
ttgaacagtttttttttctgaaagggagataggacatattttacttaatg
tttggttatcctgatttctaactttcaaactgggacagaaataagaaact
agacttcatttatacccctgccttggacaccagtaatgttgagtatgagt
catgacaataataagtaaatataattgaaggaaaagggagataaaaattt
ataaaagactattaaatgaaaagatcttcccctccaaaaccacataaaca
tgtactgtgggatgagacaggatctcggagcccgcccaagagccacggca
caaaataaatgtttactaaactcttgtcgatgaattaatgaagaacaaac
atgctcactgctgttcgtgtccataaatagcactgtgtatatgacatagc
ttgagagatgcaggcagctcagcatggtcagccacattcccaactctatc
ctgcaggtctgcctacaggcttgttgtcatcccaggtcacactggttctg
tgcatccctccctgcttaatatctcagcagtgtttctgaccagtcccttt
cttccttctgctaacctaataggagccaacaccaggcactcctttccctt
ggcaagcccccgttcctgtggcaaccaccaccttacctcacccctgcatt
acgatggtgctgtggatccttccctgctatacacaggatggtcatgtttg
catgtcacagcactaacacagggatcgcaccagctggcatgagggaaagg
ctggcttgtgcattgcatgatttgatgggtgcttgtagagctggttttca
agccagttttgttccctggattcaatgtgttgatgcctcttgcgtatggt
taaggtcctggcatcagctgcctagattt
gaattcatggtagatcagtaggctaaggggagacctcggcagaaatcata
ttagtcttcacacagttatcagggccgggatccctcccggtcagggcatc
atggtcttctgacatccacgatggacaggctcccttttataacgtgatca
tttagaacacacagtggagtgtattaccatacaaagagggcattgatgca
cctgcagcatcgcccaagccttgactctgcagtgggcagaaggttgaagg
gggaagactggcaagggaagaaggggcagattctggcctcctgttctgag
tataggtcagttaacacctacagctagtttacagaaccatcttccaaaat
tctgttttcttctcttgaaaattcatatttgcaggttcatctgggtggaa
gttgggtctttgcctttgtgtccgggaatgcgagcttttgctgaaagggg
gggttctaggaaggagggggagcaactcaccgctcagttgctgggctgtc
gccaggcgggtaggtttcaggatgaactggcattgcatctcgcggggcag
ctgctccatgaggaaaggctcttggagctgggatgggctggcagagtctc
ttgatccctgcgtcagaagggcagtgtctcggaggtggctcattttaatt
ccataaggatactcgtgtcctacaagaagaagaaaatccaaatgcagact
tcaggctgggcgagtacctcgggcgagtgctgcaaaccggagcgcactgt
gacttacacctgggccatctgggataaagaatgctttgttcagtgagaga
tccatgtgcccagtctgcagccggggcctctgcatattgcaggttggctc
tactaaatctgagaggttgtctcacagcaaggtgaagggtaagcggaggg
aaaaaaaacctcttcaaaagattccttagaatgactgtagacatcggttt
gtgggttgcataatgactttctacgtttgcatcaagattatctagcagct
ttctaaaatgaggacaagaagccctgcctggttaagattactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_51521720_51522905
seq2: B6Ng01-229P09.b_44_1222

seq1  GAATTCCTTTATAGATAACCTCAATCCTATTTCTAGGACCAAAGCAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTATAGATAACCTCAATCCTATTTCTAGGACCAAAGCAGCTC  50

seq1  ACTTGTGTCCACCCTTCTCTCAGAAGATTAGATTATATCTCCAAGATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGTCCACCCTTCTCTCAGAAGATTAGATTATATCTCCAAGATAGC  100

seq1  CAAGAAGTAGTCCCTAGTGAGGTGTGGACAGGTGAACAGGCTTGCACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTAGTCCCTAGTGAGGTGTGGACAGGTGAACAGGCTTGCACATG  150

seq1  AAGATGTCAACTGACCGCCTCTGAAGATGCTTTCCTGACATGAGGCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCAACTGACCGCCTCTGAAGATGCTTTCCTGACATGAGGCACAA  200

seq1  GGGGGCACAGTACAGGCTGATGGTATCTCCAAGTTGCCATGTTCCACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCACAGTACAGGCTGATGGTATCTCCAAGTTGCCATGTTCCACAGC  250

seq1  TCCCCCCTCCCCCTGCACTCCAAGATGTACACTAAAATCCCAAGTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTCCCCCTGCACTCCAAGATGTACACTAAAATCCCAAGTTATTT  300

seq1  TTGAACAGTTTTTTTTTCTGAAAGGGAGATAGGACATATTTTACTTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAGTTTTTTTTTCTGAAAGGGAGATAGGACATATTTTACTTAATG  350

seq1  TTTGGTTATCCTGATTTCTAACTTTCAAACTGGGACAGAAATAAGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTATCCTGATTTCTAACTTTCAAACTGGGACAGAAATAAGAAACT  400

seq1  AGACTTCATTTATACCCCTGCCTTGGACACCAGTAATGTTGAGTATGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCATTTATACCCCTGCCTTGGACACCAGTAATGTTGAGTATGAGT  450

seq1  CATGACAATAATAAGTAAATATAATTGAAGGAAAAGGGAGATAAAAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAATAATAAGTAAATATAATTGAAGGAAAAGGGAGATAAAAATTT  500

seq1  ATAAAAGACTATTAAATGAAAAGATCTTCCCCTCCAAAACCACATAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGACTATTAAATGAAAAGATCTTCCCCTCCAAAACCACATAAACA  550

seq1  TGTACTGTGGGATGAGACAGGATCTCGGAGCCCGCCCAAGAGCCACGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTGGGATGAGACAGGATCTCGGAGCCCGCCCAAGAGCCACGGCA  600

seq1  CAAAATAAATGTTTACTAAACTCTTGTCGATGAATTAATGAAGAACAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAATGTTTACTAAACTCTTGTCGATGAATTAATGAAGAACAAAC  650

seq1  ATGCTCACTGCTGTTCGTGTCCATAAATAGCACTGTGTATATGACATAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCACTGCTGTTCGTGTCCATAAATAGCACTGTGTATATGACATAGC  700

seq1  TTGAGAGATGCAGGCAGCTCAGCATGGTCAGCCACATTCCCAACTCTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGATGCAGGCAGCTCAGCATGGTCAGCCACATTCCCAACTCTATC  750

seq1  CTGCAGGTCTGCCTACAGGCTTGTTGTCATCCCAGGTCACACTGGTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGTCTGCCTACAGGCTTGTTGTCATCCCAGGTCACACTGGTTCTG  800

seq1  TGCATCCCTCCCTGCTTAATATCTCAGCAGTGTTTCTGACCAGTCCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCCTCCCTGCTTAATATCTCAGCAGTGTTTCTGACCAGTCCCTTT  850

seq1  CTTCCTTCTGCTAACCTAATAGGAGCCAACACCAGGCACTCCTTTCCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTGCTAACCTAATAGGAGCCAACACCAGGCACTCCTTTCCCTT  900

seq1  GGCAAGCCCCCGTTCCTGTGGCAACCACCACCTTACCTCACCCCTGCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCCCCCGTTCCTGTGGCAACCACCACCTTACCTCACCCCTGCATT  950

seq1  ACGATGGTGCTGTGGATCCTTCCCTGCTATACACAGGGATGGTCATGTTT  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACGATGGTGCTGTGGATCCTTCCCTGCTATACACA-GGATGGTCATGTTT  999

seq1  GCATGTTCACAGCACCTAACACAGGGATTCGCACCCAGCTGGCATGAGGG  1050
      ||||| |||||||| |||||||||||| ||||| ||||||||||||| ||
seq2  GCATG-TCACAGCA-CTAACACAGGGA-TCGCA-CCAGCTGGCATGA-GG  1044

seq1  GAAAGGCTGGC-TGTGCATTGCATGGATTTTGGATTGGGTGC-TGTAGAG  1098
      ||||||||||| |||||||||||| |||||  || ||||||| |||||||
seq2  GAAAGGCTGGCTTGTGCATTGCAT-GATTT--GA-TGGGTGCTTGTAGAG  1090

seq1  CT-GTTTTCAGGCAGGTTTTTGTCCCTGAATTC-ATGTGTGAGTGCTCTT  1146
      || ||||||| ||  |||||  |||||| |||| ||||||   |||   |
seq2  CTGGTTTTCAAGCCAGTTTTGTTCCCTGGATTCAATGTGTTGATGCCTCT  1140

seq1  TGCTAATGGTGTAGGTTCTGGCATCAGGCTGCCTAGATTT  1186
      |||  |||||  |||| ||||||||| |||||||||||||
seq2  TGCGTATGGTTAAGGTCCTGGCATCA-GCTGCCTAGATTT  1179

seq1: chr9_51639368_51640412
seq2: B6Ng01-229P09.g_68_1111 (reverse)

seq1  GGAGTAATCTTTACCAGGCA-GGCTTCTTTGTCCTCATTTTTAGAAGCTC  49
      ||||||||||| |||||||| |||||| |||||||||||||   ||||| 
seq2  GGAGTAATCTTAACCAGGCAGGGCTTC-TTGTCCTCATTTTAGAAAGCTG  49

seq1  TTAGATATTCTTGATGCAAACGTAGAAAAGGTCAATTATGCAACCCACAA  99
       |||||| ||||||||||||||||||||  ||| ||||||||||||||||
seq2  CTAGATAATCTTGATGCAAACGTAGAAA--GTC-ATTATGCAACCCACAA  96

seq1  ACCGATGTCTACAGTCATTCTAAGGAATCTTTTGAAGA-GTTTTTTTTCC  148
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACCGATGTCTACAGTCATTCTAAGGAATCTTTTGAAGAGGTTTTTTTTCC  146

seq1  CTCCGCTTACCCTTCACC-TGCTGTGAGACAACCTCTCAGATTTGGTAGA  197
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  CTCCGCTTACCCTTCACCTTGCTGTGAGACAACCTCTCAGATTTAGTAGA  196

seq1  GCC-ACCTGCAATATGCAGAGGCCCCGGCTGCAGACTGGGCACATGGATC  246
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCTGCAATATGCAGAGGCCCCGGCTGCAGACTGGGCACATGGATC  246

seq1  TCTCACTGAACAAAAGCATTCTTTATCCCAGATGGCCCAGGTGTAAGTCA  296
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGAAC-AAAGCATTCTTTATCCCAGATGGCCCAGGTGTAAGTCA  295

seq1  CAGTGCGCTCCGGTTTGCAGCACTCGCCCGAGGTACTCGCCCAGCCTGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCGCTCCGGTTTGCAGCACTCGCCCGAGGTACTCGCCCAGCCTGAA  345

seq1  GTCTGCATTTGGATTTTCTTCTTCTTGTAGGACACGAGTATCCTTATGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATTTGGATTTTCTTCTTCTTGTAGGACACGAGTATCCTTATGGA  395

seq1  ATTAAAATGAGCCACCTCCGAGACACTGCCCTTCTGACGCAGGGATCAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATGAGCCACCTCCGAGACACTGCCCTTCTGACGCAGGGATCAAG  445

seq1  AGACTCTGCCAGCCCATCCCAGCTCCAAGAGCCTTTCCTCATGGAGCAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGCCAGCCCATCCCAGCTCCAAGAGCCTTTCCTCATGGAGCAGC  495

seq1  TGCCCCGCGAGATGCAATGCCAGTTCATCCTGAAACCTACCCGCCTGGCG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCGCGAGATGCAATGCCAGTTCATCCTGAAACCTACCCGCCTGGCG  545

seq1  ACAGCCCAGCAACTGAGCGGTGAGTTGCTCCCCCTCCTTCCTAGAACCCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCAGCAACTGAGCGGTGAGTTGCTCCCCCTCCTTCCTAGAACCCC  595

seq1  CCCTTTCAGCAAAAGCTCGCATTCCCGGACACAAAGGCAAAGACCCAACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCAGCAAAAGCTCGCATTCCCGGACACAAAGGCAAAGACCCAACT  645

seq1  TCCACCCAGATGAACCTGCAAATATGAATTTTCAAGAGAAGAAAACAGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCAGATGAACCTGCAAATATGAATTTTCAAGAGAAGAAAACAGAA  695

seq1  TTTTGGAAGATGGTTCTGTAAACTAGCTGTAGGTGTTAACTGACCTATAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAGATGGTTCTGTAAACTAGCTGTAGGTGTTAACTGACCTATAC  745

seq1  TCAGAACAGGAGGCCAGAATCTGCCCCTTCTTCCCTTGCCAGTCTTCCCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACAGGAGGCCAGAATCTGCCCCTTCTTCCCTTGCCAGTCTTCCCC  795

seq1  CTTCAACCTTCTGCCCACTGCAGAGTCAAGGCTTGGGCGATGCTGCAGGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCTTCTGCCCACTGCAGAGTCAAGGCTTGGGCGATGCTGCAGGT  845

seq1  GCATCAATGCCCTCTTTGTATGGTAATACACTCCACTGTGTGTTCTAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAATGCCCTCTTTGTATGGTAATACACTCCACTGTGTGTTCTAAAT  895

seq1  GATCACGTTATAAAAGGGAGCCTGTCCATCGTGGATGTCAGAAGACCATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACGTTATAAAAGGGAGCCTGTCCATCGTGGATGTCAGAAGACCATG  945

seq1  ATGCCCTGACCGGGAGGGATCCCGGCCCTGATAACTGTGTGAAGACTAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTGACCGGGAGGGATCCCGGCCCTGATAACTGTGTGAAGACTAAT  995

seq1  ATGATTTCTGCCGAGGTCTCCCCTTAGCCTACTGATCTACCATGAATTC  1045
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCTGCCGAGGTCTCCCCTTAGCCTACTGATCTACCATGAATTC  1044