BAC Information

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BAC

Clone NameB6Ng01-230C05
Chromosome9 (Build37)
Map Location 28,026,865 - 28,159,944
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneIgsf9b, Spata19, LOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230C05.bB6Ng01-230C05.g
ACCGA043079GA043080
length1,1751,167
definitionB6Ng01-230C05.b B6Ng01-230C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,158,761 - 28,159,944)(28,026,865 - 28,028,043)
sequence
gaattccttagtcagaacaaacacctcctcctgatattaatggatgacca
caaaataattgacttgaaacaacctcaaatcatctaatcagagaatctgt
gaatagaaactcaattaagacatctacttatggtttcataacaatgcaat
caagtcaggggtggactaagccaggttcttttctgagtctgagttttctt
caagtttaatgcagactggtagacttcagttctttgaatgaatgaaacta
aggttcccgttctctcctttaaaaatcccttttattttcatgagcatgag
tgttttacttacatgtatgtctgtcatgtgcatgcagttacccacaagac
tggatgaggattagagatcccatgatactaaagatacagtttcgagccac
catgtaggtgatggcaattgaacccaggtctcatggaaaagcagttcatg
ctcttacctactttcaagtcactaaaatttccattcttgtgctagctgaa
agcaattcactactgttagctacggtagccacccaaagacacttaccaca
aactatctactccacaactctcagcatacctgttggctcatctgagcttg
ccaagagagacccctctcattataaatcagtctcttcccaaggtctgaaa
taggtggggatagtataagtgcgatgatctgtttgtaattaactcgaagc
cagtggattaagggatcccatgattgccaagtcgatctgaggcagagcag
cctacaaacttagagcatgcctttgagggtgtctattaaggatatttcta
gagacaaccaaaatttgtgctggagaactgactaggaaagccccactttg
aataggagcagcaccagccaattttctaagagtgccaataggagaaaagg
cagaacggggcaggttcatatgcacatgtacttactccagtcttcttgag
ctggtgcagccatcactgtagaaaacagatgcactgggtctccaaactat
gatttcactggattctacagtggggggtgggggagcctcaggctttttgt
cctcctgagtaggctacatgtttcttcctctattctacgcctttcagttt
tagatggaatagcttattttgcttgactgtttcagtctactgcagcaaac
tatgatgatctagtactgaatatga

gaattctttgaatattgcaaacaatcctggcataatctttcccgagcatc
atcatgaaagcagacacaggaccatttcctcagtcccgtgtctgtgaagc
cataacagcattttaagaaaaataataatatccttttctactgcccttga
atgacaaagctgatggaaaataaagtcatagataactctggcttacagta
taagcatcctgtacccatctttggggttattaacaggtgccaatcaaagg
tggaaatatcaaatctcagtgaaactcccagaaaatggtaggaccagtat
catccatacaggatcagcctgcccacaccaacaacaaccaggaattgctt
cttctgataccagctttattttatgggagttctgtctgcgcacaaagaaa
agtcactggagttcattgttttcttagcaggtgggatctgtgagtttaaa
gggagctccagatgggaagagatgatgaaagacccatcagaaagactcat
tttctcatgggtgttaaacattacatttagagggtccatagggcccttga
aaccaatagaactaatgagagagctgatgttgaaacagtcctgtactaac
taagatgggggaatgtgccaagacaaagagcccagtgacctcattgagag
tgaagacaacagaattgtagtctcagaaaacctctctctctcagacagaa
gcaagagaaaaagaacactattctggagtttcattgttttagtctaaatc
acattgaggtgacccatggagccagagtagatggtgccagcagcagtgtg
caagtgacattttttccctcagatattgaaaatgacacaagatgagtctg
ctggggttccagtgtgtttgtgcattcctctcacatgcccagatttaagt
atattttcccctaaacaatgccagaatcaattctattatccagaagaaca
gattggcttagggaggctagaaattgttccctacattcagaaagcactgg
tatcatctgcacctcatatattttatcttgggggcaacttatgttcataa
atataatgagttttgcctacacacatatagaatgccatcattctatcatt
tcatctcaaatggagaattgagaacagggaacattaaaaggctttaacca
cttgaatataaatggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28158761_28159944
seq2: B6Ng01-230C05.b_46_1220 (reverse)

seq1  TCATAATCAGTTACTAGATCATTCCATAG-TTGCTGCCAGTAGACTGGAA  49
      ||||| |||| |||||||||||  ||||| |||||| ||||||||||   
seq2  TCATATTCAG-TACTAGATCAT--CATAGTTTGCTG-CAGTAGACTG---  43

seq1  AACCAGACAAGCAAA--TAGCTATT-CATCTAAAAACTGAAAGCCTTAGA  96
      || ||| ||||||||   ||||||| ||||| ||||||||||| | ||||
seq2  AAACAGTCAAGCAAAATAAGCTATTCCATCT-AAAACTGAAAGGCGTAGA  92

seq1  ATAAGAGGAAGAAACAATGTAGCCTTACTCAG--AGACAAAAAGCCTGGA  144
      || |||||||||||| |||||||| |||||||   |||||||||||||  
seq2  AT-AGAGGAAGAAAC-ATGTAGCC-TACTCAGGAGGACAAAAAGCCTG--  137

seq1  AGCCTTCCCCACCCCCACTTGTAGAATTCCAGTTGAAATTCATAGTTTGG  194
      || || ||||||||||   ||||||| ||||| ||||| |||||||||||
seq2  AGGCTCCCCCACCCCCCACTGTAGAA-TCCAG-TGAAA-TCATAGTTTGG  184

seq1  AGA-CCAGTGCATCTGTTTTCTACAGTGATGGCTGCACCAGCTCAAGAAG  243
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGTGCATCTGTTTTCTACAGTGATGGCTGCACCAGCTCAAGAAG  234

seq1  ACTGGAGTAAGTACATGTGCATATGAACCTGCCCCCTTCTGCCTTTTCTC  293
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTGGAGTAAGTACATGTGCATATGAACCTGCCCCGTTCTGCCTTTTCTC  284

seq1  CTATTGGCACTCTTAGAAAATTGGCTGGTGCTGCTCCTATTCAAAGTGGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGCACTCTTAGAAAATTGGCTGGTGCTGCTCCTATTCAAAGTGGG  334

seq1  GCTTTCCTAGTCAGTTCTCCAGCACAAATTTTGGTTGTCTCTAGAAATAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTAGTCAGTTCTCCAGCACAAATTTTGGTTGTCTCTAGAAATAT  384

seq1  CCTTAATAGACACCCTCAAAGGCATGCTCTAAGTTTGTAGGCTGCTCTGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATAGACACCCTCAAAGGCATGCTCTAAGTTTGTAGGCTGCTCTGC  434

seq1  CTCAGATCGACTTGGCAATCATGGGATCCCTTAATCCACTGGCTTCGAGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATCGACTTGGCAATCATGGGATCCCTTAATCCACTGGCTTCGAGT  484

seq1  TAATTACAAACAGATCATCGCACTTATACTATCCCCACCTATTTCAGACC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACAAACAGATCATCGCACTTATACTATCCCCACCTATTTCAGACC  534

seq1  TTGGGAAGAGACTGATTTATAATGAGAGGGGTCTCTCTTGGCAAGCTCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGAGACTGATTTATAATGAGAGGGGTCTCTCTTGGCAAGCTCAG  584

seq1  ATGAGCCAACAGGTATGCTGAGAGTTGTGGAGTAGATAGTTTGTGGTAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCAACAGGTATGCTGAGAGTTGTGGAGTAGATAGTTTGTGGTAAG  634

seq1  TGTCTTTGGGTGGCTACCGTAGCTAACAGTAGTGAATTGCTTTCAGCTAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGGGTGGCTACCGTAGCTAACAGTAGTGAATTGCTTTCAGCTAG  684

seq1  CACAAGAATGGAAATTTTAGTGACTTGAAAGTAGGTAAGAGCATGAACTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAATGGAAATTTTAGTGACTTGAAAGTAGGTAAGAGCATGAACTG  734

seq1  CTTTTCCATGAGACCTGGGTTCAATTGCCATCACCTACATGGTGGCTCGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCATGAGACCTGGGTTCAATTGCCATCACCTACATGGTGGCTCGA  784

seq1  AACTGTATCTTTAGTATCATGGGATCTCTAATCCTCATCCAGTCTTGTGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATCTTTAGTATCATGGGATCTCTAATCCTCATCCAGTCTTGTGG  834

seq1  GTAACTGCATGCACATGACAGACATACATGTAAGTAAAACACTCATGCTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGCATGCACATGACAGACATACATGTAAGTAAAACACTCATGCTC  884

seq1  ATGAAAATAAAAGGGATTTTTAAAGGAGAGAACGGGAACCTTAGTTTCAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATAAAAGGGATTTTTAAAGGAGAGAACGGGAACCTTAGTTTCAT  934

seq1  TCATTCAAAGAACTGAAGTCTACCAGTCTGCATTAAACTTGAAGAAAACT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAAAGAACTGAAGTCTACCAGTCTGCATTAAACTTGAAGAAAACT  984

seq1  CAGACTCAGAAAAGAACCTGGCTTAGTCCACCCCTGACTTGATTGCATTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGAAAAGAACCTGGCTTAGTCCACCCCTGACTTGATTGCATTG  1034

seq1  TTATGAAACCATAAGTAGATGTCTTAATTGAGTTTCTATTCACAGATTCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAACCATAAGTAGATGTCTTAATTGAGTTTCTATTCACAGATTCT  1084

seq1  CTGATTAGATGATTTGAGGTTGTTTCAAGTCAATTATTTTGTGGTCATCC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAGATGATTTGAGGTTGTTTCAAGTCAATTATTTTGTGGTCATCC  1134

seq1  ATTAATATCAGGAGGAGGTGTTTGTTCTGACTAAGGAATTC  1184
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATCAGGAGGAGGTGTTTGTTCTGACTAAGGAATTC  1175


seq1: chr9_28026865_28028043
seq2: B6Ng01-230C05.g_67_1233

seq1  GAATTCTTTGAATATTGCAAACAATCCTGGCATAATCTTTCCCGAGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAATATTGCAAACAATCCTGGCATAATCTTTCCCGAGCATC  50

seq1  ATCATGAAAGCAGACACAGGACCATTTCCTCAGTCCCGTGTCTGTGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAAAGCAGACACAGGACCATTTCCTCAGTCCCGTGTCTGTGAAGC  100

seq1  CATAACAGCATTTTAAGAAAAATAATAATATCCTTTTCTACTGCCCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAGCATTTTAAGAAAAATAATAATATCCTTTTCTACTGCCCTTGA  150

seq1  ATGACAAAGCTGATGGAAAATAAAGTCATAGATAACTCTGGCTTACAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAGCTGATGGAAAATAAAGTCATAGATAACTCTGGCTTACAGTA  200

seq1  TAAGCATCCTGTACCCATCTTTGGGGTTATTAACAGGTGCCAATCAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATCCTGTACCCATCTTTGGGGTTATTAACAGGTGCCAATCAAAGG  250

seq1  TGGAAATATCAAATCTCAGTGAAACTCCCAGAAAATGGTAGGACCAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATATCAAATCTCAGTGAAACTCCCAGAAAATGGTAGGACCAGTAT  300

seq1  CATCCATACAGGATCAGCCTGCCCACACCAACAACAACCAGGAATTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATACAGGATCAGCCTGCCCACACCAACAACAACCAGGAATTGCTT  350

seq1  CTTCTGATACCAGCTTTATTTTATGGGAGTTCTGTCTGCGCACAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGATACCAGCTTTATTTTATGGGAGTTCTGTCTGCGCACAAAGAAA  400

seq1  AGTCACTGGAGTTCATTGTTTTCTTAGCAGGTGGGATCTGTGAGTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGGAGTTCATTGTTTTCTTAGCAGGTGGGATCTGTGAGTTTAAA  450

seq1  GGGAGCTCCAGATGGGAAGAGATGATGAAAGACCCATCAGAAAGACTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTCCAGATGGGAAGAGATGATGAAAGACCCATCAGAAAGACTCAT  500

seq1  TTTCTCATGGGTGTTAAACATTACATTTAGAGGGTCCATAGGGCCCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATGGGTGTTAAACATTACATTTAGAGGGTCCATAGGGCCCTTGA  550

seq1  AACCAATAGAACTAATGAGAGAGCTGATGTTGAAACAGTCCTGTACTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATAGAACTAATGAGAGAGCTGATGTTGAAACAGTCCTGTACTAAC  600

seq1  TAAGATGGGGGAATGTGCCAAGACAAAGAGCCCAGTGACCTCATTGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGGGGAATGTGCCAAGACAAAGAGCCCAGTGACCTCATTGAGAG  650

seq1  TGAAGACAACAGAATTGTAGTCTCAGAAAACCTCTCTCTCTCAGACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAACAGAATTGTAGTCTCAGAAAACCTCTCTCTCTCAGACAGAA  700

seq1  GCAAGAGAAAAAGAACACTATTCTGGAGTTTCATTGTTTTAGTCTAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGAAAAAGAACACTATTCTGGAGTTTCATTGTTTTAGTCTAAATC  750

seq1  ACATTGAGGTGACCCATGGAGCCAGAGTAGATGGTGCCAGCAGCAGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAGGTGACCCATGGAGCCAGAGTAGATGGTGCCAGCAGCAGTGTG  800

seq1  CAAGTGACATTTTTTCCCTCAGATATTGAAAATGACACAAGATGAGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGACATTTTTTCCCTCAGATATTGAAAATGACACAAGATGAGTCTG  850

seq1  CTGGGGTTCCAGTGTGTTTGTGCATTCCTCTCACATGCCCAGATTTAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTTCCAGTGTGTTTGTGCATTCCTCTCACATGCCCAGATTTAAGT  900

seq1  ATATTTTCCCCTAAACAATGCCAGAATCAATTCTATTATCCAGAAAGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATATTTTCCCCTAAACAATGCCAGAATCAATTCTATTATCCAG-AAGAAC  949

seq1  AGATTGGCTTAGGGAGGCTAGAAA-TGTTCCCTACATTCAGAAAGCAACT  999
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  AGATTGGCTTAGGGAGGCTAGAAATTGTTCCCTACATTCAGAAAGC-ACT  998

seq1  GGTATCATCTGCA-CTCATATA-TTTATCTTGGGGGCAACTTATGTTCAT  1047
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  GGTATCATCTGCACCTCATATATTTTATCTTGGGGGCAACTTATGTTCAT  1048

seq1  -AATAT-ATGAGTTTTGCCTAACAACAACAATATAGATAGCCATCATTCC  1095
       ||||| |||||||||||||    |||   |||||||  ||||||||| |
seq2  AAATATAATGAGTTTTGCCT----ACACACATATAGAATGCCATCATT-C  1093

seq1  TATCATTTTCATCTCAAAAATGAGAAAATTGAGAACCAGGAACATTTAAA  1145
      ||||| |||||||||  ||||| || ||||||||||  |||||| |||||
seq2  TATCA-TTTCATCTC--AAATG-GAGAATTGAGAACAGGGAACA-TTAAA  1138

seq1  AAGCTTTTTAACCACACTGAATTAATAAATGGCA  1179
      | ||  |||||||||  |||||  ||||||||||
seq2  AGGC--TTTAACCAC-TTGAAT--ATAAATGGCA  1167


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