BAC Information

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BAC

Clone NameB6Ng01-230I10
Chromosome9 (Build37)
Map Location 23,879,193 - 24,033,541
singlet/doubletdoublet
Overlap geneNpsr1
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893
Downstream geneDpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230I10.bB6Ng01-230I10.g
ACCGA043369GA043370
length603573
definitionB6Ng01-230I10.b B6Ng01-230I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,879,193 - 23,879,795)(24,032,980 - 24,033,541)
sequence
gaattcaaaggagtggttacaactatgttcaaacaacttaaagacatgga
taaattccaagagaacagagacaaagagatgaacctaatgggagcagtcc
ttccaagacaggaaaagaaaggtagaaatgctgaagaactcccaacctga
aatattaagaatgaaaaacttaataaaccaagtgaaatcctctgtataaa
gcctcatcaatagaggtaatcatgcagaaatcaagagttcagggacgtaa
gacagatagaggaactagatcatgcattatgggccaatgataaatcttaa
aggaaatatgaacaaagagttgggggagctctgagacactgtgaaagcac
ttacccttcaaatttcaggcataggaaaaggagaaaaccatagtgaccac
attgagaatatcttcaaggaaatttcccagacctagagatggagatagtc
atccaagtacaagaaacctacataactctacataaacagaacctaaaata
aaacccatgatgggatattatagttaaagtacaaaaagcaaacaataaag
agagggtattgaaaactttgagaaagcaatcacagtggggagggagagag
gga

aacagcatctttggaggttctttgcctcataattttttgtcaaggctttt
aaaaaatactatttttattatatattgtcatatattgttatttatttatt
tatttatttatgctctccaggtcctttgtgtataactttagcttccggtt
tagtgtttttatgggatttctgactgtgcaggtgactgggtctctgcata
tatatctgtttcttgtgactttttgtgggctcttttccttctgtttgttt
tgttctactccgatgtgttagtttttgttctttcttttatatgttataat
atattatattatgttatagtatattttatattaccttagaattctgacta
tttctaaagggagacatacagggatagatctggatggcaggagaagtggg
gaggaatttggagaagtagagagaggggaaaccataatcaggacatatta
gaaaagctctattttcaataacagtatataaaaagagaatacagtactca
ccaggagataaggcaggaaggagtgaggtcattctaggtttggcctctta
tactcttatgtttttgatgcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_23879193_23879795
seq2: B6Ng01-230I10.b_44_646

seq1  GAATTCAAAGGAGTGGTTACAACTATGTTCAAACAACTTAAAGACATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGAGTGGTTACAACTATGTTCAAACAACTTAAAGACATGGA  50

seq1  TAAATTCCAAGAGAACAGAGACAAAGAGATGAACCTAATGGGAGCAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCAAGAGAACAGAGACAAAGAGATGAACCTAATGGGAGCAGTCC  100

seq1  TTCCAAGACAGGAAAAGAAAGGTAGAAATGCTGAAGAACTCCCAACCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGACAGGAAAAGAAAGGTAGAAATGCTGAAGAACTCCCAACCTGA  150

seq1  AATATTAAGAATGAAAAACTTAATAAACCAAGTGAAATCCTCTGTATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAGAATGAAAAACTTAATAAACCAAGTGAAATCCTCTGTATAAA  200

seq1  GCCTCATCAATAGAGGTAATCATGCAGAAATCAAGAGTTCAGGGACGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATCAATAGAGGTAATCATGCAGAAATCAAGAGTTCAGGGACGTAA  250

seq1  GACAGATAGAGGAACTAGATCATGCATTATGGGCCAATGATAAATCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATAGAGGAACTAGATCATGCATTATGGGCCAATGATAAATCTTAA  300

seq1  AGGAAATATGAACAAAGAGTTGGGGGAGCTCTGAGACACTGTGAAAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATATGAACAAAGAGTTGGGGGAGCTCTGAGACACTGTGAAAGCAC  350

seq1  TTACCCTTCAAATTTCAGGCATAGGAAAAGGAGAAAACCATAGTGACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTTCAAATTTCAGGCATAGGAAAAGGAGAAAACCATAGTGACCAC  400

seq1  ATTGAGAATATCTTCAAGGAAATTTCCCAGACCTAGAGATGGAGATAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAATATCTTCAAGGAAATTTCCCAGACCTAGAGATGGAGATAGTC  450

seq1  ATCCAAGTACAAGAAACCTACATAACTCTACATAAACAGAACCTAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGTACAAGAAACCTACATAACTCTACATAAACAGAACCTAAAATA  500

seq1  AAACCCATGATGGGATATTATAGTTAAAGTACAAAAAGCAAACAATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATGATGGGATATTATAGTTAAAGTACAAAAAGCAAACAATAAAG  550

seq1  AGAGGGTATTGAAAACTTTGAGAAAGCAATCACAGTGGGGAGGGAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTATTGAAAACTTTGAGAAAGCAATCACAGTGGGGAGGGAGAGAG  600

seq1  GGA  603
      |||
seq2  GGA  603


seq1: chr9_24032980_24033541
seq2: B6Ng01-230I10.g_83_644 (reverse)

seq1  TATGCATCAAAAACATAAGAGTATAAGAGGCCAAACCTAGAATGACCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATCAAAAACATAAGAGTATAAGAGGCCAAACCTAGAATGACCTCA  50

seq1  CTCCTTCCTGCCTTATCTCCTGGTGAGTACTGTATTCTCTTTTTATATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCTGCCTTATCTCCTGGTGAGTACTGTATTCTCTTTTTATATAC  100

seq1  TGTTATTGAAAATAGAGCTTTTCTAATATGTCCTGATTATGGTTTCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTGAAAATAGAGCTTTTCTAATATGTCCTGATTATGGTTTCCCCT  150

seq1  CTCTCTACTTCTCCAAATTCCTCCCCACTTCTCCTGCCATCCAGATCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTACTTCTCCAAATTCCTCCCCACTTCTCCTGCCATCCAGATCTAT  200

seq1  CCCTGTATGTCTCCCTTTAGAAATAGTCAGAATTCTAAGGTAATATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTATGTCTCCCTTTAGAAATAGTCAGAATTCTAAGGTAATATAAAA  250

seq1  TATACTATAACATAATATAATATATTATAACATATAAAAGAAAGAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTATAACATAATATAATATATTATAACATATAAAAGAAAGAACAAA  300

seq1  AACTAACACATCGGAGTAGAACAAAACAAACAGAAGGAAAAGAGCCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACACATCGGAGTAGAACAAAACAAACAGAAGGAAAAGAGCCCACA  350

seq1  AAAAGTCACAAGAAACAGATATATATGCAGAGACCCAGTCACCTGCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCACAAGAAACAGATATATATGCAGAGACCCAGTCACCTGCACAG  400

seq1  TCAGAAATCCCATAAAAACACTAAACCGGAAGCTAAAGTTATACACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCCCATAAAAACACTAAACCGGAAGCTAAAGTTATACACAAAG  450

seq1  GACCTGGAGAGCATAAATAAATAAATAAATAAATAACAATATATGACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGAGAGCATAAATAAATAAATAAATAAATAACAATATATGACAAT  500

seq1  ATATAATAAAAATAGTATTTTTTAAAAGCCTTGACAAAAAATTATGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATAAAAATAGTATTTTTTAAAAGCCTTGACAAAAAATTATGAGGC  550

seq1  AAAGAACCTCCA  562
      ||||||||||||
seq2  AAAGAACCTCCA  562


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