BAC Information

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BAC

Clone NameB6Ng01-231O06
Chromosome9 (Build37)
Map Location 53,758,966 - 53,760,155
singlet/doubletsinglet
Overlap geneElmod1
Upstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996
Downstream geneTnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231O06.bB6Ng01-231O06.g
ACCGA044365GA044366
length1,2041,180
definitionB6Ng01-231O06.b B6Ng01-231O06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggccagcctagtctacacagtgagtcacaggtcaggtagggc
tacataatgagatgctgtcaaaaatgaaaaagaaagaaagaaaaatagct
cattcattaaagcatcatcggacctcaagattaagggaatctctcagcca
tagcacattctgaattacacctggctgctctgaaaggcagtggtttataa
acaaacagcttcttgtcactgacattctacccagtcacatatttgcatat
cttaagacctataaagggcacagacatcagaatgaaacccactctccatt
actgtagaatgatatgcaatttattcatatactgacagttaggcagtact
caaaatttatttaaataagcaagtgattacacaaacatctaataatacta
aaatcgatagtcccaaagtataaaataccacgggtatgaaataccatggt
aaatactattcaacagactacagtcataattccaaactaaattacatttt
aaagaagatgattcttagcagtttgaggatgatcttgttttttttcttcc
aagccacttcttccaccgatacaaggatgctaatttcaggaaatattgca
tggtatcattgcttaggttcctgtgttctaacacattttcttgacaaaaa
gttttaaaatattgcccctcaacatagaaacaaaccagtcagcactcaaa
tcccctaagcaaggatactcagatctggggagtgctaagaactaagtctg
ggttcagcaagagtcagatagtgagaaaccctttgcagccttggaaagat
atggcttcttttctgggggctccgagcatcatacacatatttagacatcc
aagccatgaagcgatgggagaatagtagtagtttttctatcctgatgact
aggaacacagttgtactgtggttaagttaaggctacagttcggcaggatt
tcacacaaaggatgggttcctatttaagctaatttcttatagcttcatta
acattctggtgaagtgcagtattatgtgcaggaagagtttgggcttatcc
atgtggtctgtattattaaaggtcttaatgcctttaacccaaatggaggt
aacaggcaagggttccagcttgataggctaagcagccagtcttcttgaga
catttaaatgaatacgaacgaacggttccagcttactctcttaccgtaca
aatt
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaactgcaaatcaaaacaacactgagat
tccacctcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgttggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctatcaaaaaaaatgaatttatgaaatccctaggcaa
atggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaa
ggaactcgcacaatatgtactcactgataagtggataatagcccagaaac
ttaggatacccaagatgtaagatacaacttgccaaacgcatgaaattcaa
gaagaacgaagaccaaagtgtgggacactttacctctttcttagaaatgg
gaacaaaacacccatagaaggagttagagacaaaatttgggagctatgac
gaaaggatggaccatctagtgacagccatatgcagggatccatcccataa
tcagcttccaaaatgctgacaccattgcatacacctagcaagatttcgct
gaaaggacccagttatagctctctctttgtgagactatgccgggggccta
gcaaacacagaagtggatgcctcacaggtcagctatttggatggatcaca
agcgctcccaatggaaggagcctagagaaagtattccaagagctataggg
aactgccacccttataggtgtgaacactatatggaacttaccagtacccg
ggagctctttgtcgtagcttgctattgtatcaaagatggcctattcgtca
tactgcaaaagaaggccattggaacttgcaaactttattgactcagtacc
ggggaaccgcccaaggtctaaaaggggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_53758966_53760155
seq2: B6Ng01-231O06.b_48_1251

seq1  GAATTCCAGGCCAGCCTAGTCTACACAGTGAGTCACAGGTCAGGTAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCTAGTCTACACAGTGAGTCACAGGTCAGGTAGGGC  50

seq1  TACATAATGAGATGCTGTCAAAAATGAAAAAGAAAGAAAGAAAAATAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATGAGATGCTGTCAAAAATGAAAAAGAAAGAAAGAAAAATAGCT  100

seq1  CATTCATTAAAGCATCATCGGACCTCAAGATTAAGGGAATCTCTCAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTAAAGCATCATCGGACCTCAAGATTAAGGGAATCTCTCAGCCA  150

seq1  TAGCACATTCTGAATTACACCTGGCTGCTCTGAAAGGCAGTGGTTTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATTCTGAATTACACCTGGCTGCTCTGAAAGGCAGTGGTTTATAA  200

seq1  ACAAACAGCTTCTTGTCACTGACATTCTACCCAGTCACATATTTGCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAGCTTCTTGTCACTGACATTCTACCCAGTCACATATTTGCATAT  250

seq1  CTTAAGACCTATAAAGGGCACAGACATCAGAATGAAACCCACTCTCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGACCTATAAAGGGCACAGACATCAGAATGAAACCCACTCTCCATT  300

seq1  ACTGTAGAATGATATGCAATTTATTCATATACTGACAGTTAGGCAGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGAATGATATGCAATTTATTCATATACTGACAGTTAGGCAGTACT  350

seq1  CAAAATTTATTTAAATAAGCAAGTGATTACACAAACATCTAATAATACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTATTTAAATAAGCAAGTGATTACACAAACATCTAATAATACTA  400

seq1  AAATCGATAGTCCCAAAGTATAAAATACCACGGGTATGAAATACCATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGATAGTCCCAAAGTATAAAATACCACGGGTATGAAATACCATGGT  450

seq1  AAATACTATTCAACAGACTACAGTCATAATTCCAAACTAAATTACATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTATTCAACAGACTACAGTCATAATTCCAAACTAAATTACATTTT  500

seq1  AAAGAAGATGATTCTTAGCAGTTTGAGGATGATCTTGTTTTTTTTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGATGATTCTTAGCAGTTTGAGGATGATCTTGTTTTTTTTCTTCC  550

seq1  AAGCCACTTCTTCCACCGATACAAGGATGCTAATTTCAGGAAATATTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTTCTTCCACCGATACAAGGATGCTAATTTCAGGAAATATTGCA  600

seq1  TGGTATCATTGCTTAGGTTCCTGTGTTCTAACACATTTTCTTGAC-AAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGTATCATTGCTTAGGTTCCTGTGTTCTAACACATTTTCTTGACAAAAA  650

seq1  GTTTTAAAATATTGCCCCTCAACATAGAAACAAACCAGTCAGCACTC-AA  698
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTTTAAAATATTGCCCCTCAACATAGAAACAAACCAGTCAGCACTCAAA  700

seq1  TCCCCTAAGCAAGGATACTCAGATCTGGGGAGTGCTAAGAACTAAGTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAAGCAAGGATACTCAGATCTGGGGAGTGCTAAGAACTAAGTCTG  750

seq1  GGTTCAGCAAGAGTCAGATAGTGAGAAACCCTTTGCAGCCTTGGAAAGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGCAAGAGTCAGATAGTGAGAAACCCTTTGCAGCCTTGGAAAGAT  800

seq1  ATGGCTTCTTTTCTGGGGGCTCCGAGCATCATACACATATTTAGACATCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCTTTTCTGGGGGCTCCGAGCATCATACACATATTTAGACATCC  850

seq1  AAGCCATGAAGCGATGGGAGAATAGTAGTAG-TTTTCTATCCTGATGACT  897
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGCCATGAAGCGATGGGAGAATAGTAGTAGTTTTTCTATCCTGATGACT  900

seq1  AGG-ACACAGTTGTACTGTGGTTAAGTT-AGGCTACAGTTCGGCAGGATT  945
      ||| |||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGGAACACAGTTGTACTGTGGTTAAGTTAAGGCTACAGTTCGGCAGGATT  950

seq1  TCACAC-AAGGAT-GGTTCCTATTTAAGCTAATTTCTTATAGCCTCATT-  992
      |||||| |||||| ||||||||||||||||||||||||||||| ||||| 
seq2  TCACACAAAGGATGGGTTCCTATTTAAGCTAATTTCTTATAGCTTCATTA  1000

seq1  ACATTCTGGTGAAGTGCAGTTATATGTGCAGGAAGAGTTT-GGCTTAT-C  1040
      ||||||||||||||||||||  |||||||||||||||||| ||||||| |
seq2  ACATTCTGGTGAAGTGCAGTATTATGTGCAGGAAGAGTTTGGGCTTATCC  1050

seq1  ATGT-GTCTGTATTATTTTAAAAGTCTT-ATGC--TTTACCCAAAT-GAG  1085
      |||| ||||||||||  ||||| ||||| ||||  || |||||||| |||
seq2  ATGTGGTCTGTATTA--TTAAAGGTCTTAATGCCTTTAACCCAAATGGAG  1098

seq1  GT-ACAAGCAAGGG-TCCAGCTTGAGAGGCT-AGCAG-CAGTCTTCGTGA  1131
      || ||| ||||||| |||||||||| ||||| ||||| |||||||| |||
seq2  GTAACAGGCAAGGGTTCCAGCTTGATAGGCTAAGCAGCCAGTCTTCTTGA  1148

seq1  GACATTTTAATAAATAGGAACACAGAACGAGATTCAGCTAACTCTCTTA-  1180
      ||||||| ||| |||| ||||   ||||| | | ||||| ||||||||| 
seq2  GACATTTAAATGAATACGAAC---GAACG-GTTCCAGCTTACTCTCTTAC  1194

seq1  CGTACAAATT  1190
      ||||||||||
seq2  CGTACAAATT  1204