BAC Information

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BAC

Clone NameB6Ng01-232N09
Chromosome9 (Build37)
Map Location 92,603,768 - 92,735,677
singlet/doubletdoublet
Overlap geneLOC100039944, LOC667009
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931
Downstream geneLOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232N09.bB6Ng01-232N09.g
ACCGA045070GA045071
length7891,140
definitionB6Ng01-232N09.b B6Ng01-232N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,603,768 - 92,604,554)(92,734,546 - 92,735,677)
sequence
gaattccaggtagagtcgagcttttctgtcatactggagcatggaaggtg
gggattgtgggactgtaaacaggtaagccagaggagcttgctatccaggc
atatagttgaagttaggagctgtaaattcactgaacagactcttgttcaa
aaagatatagcatagagtgatagggaaaatgtccagatcaaccactgact
tctacacgaacacacacacacacacacacacacacacacacacacacaca
cacacacacaaacatgtgtatatcatacacatatactacatatgcacaaa
aaaccccagattaaaaatattttatttaatatccataaatgcatacaatt
tgtttggatccaatctacctttcatgcccatctcttcaatttttctctag
attcttggtctccctcccaacataatacacttcctttctgtttttaaatt
taatacccactgagttcatttggtgattagcttctcagttcttattttac
caaagaaaagtggctcttccttttccagaatccatcgactgtcaaatagc
taatcatgggcgtcagacttcatgactcccaactatgatggaattttgga
tgatttgatcttgtgcacacagttccagccactgttgcatttgtgtgcaa
ttgcactatcacgtcgcgcagatttcgttttgctaaagatagctgctgcc
tctgctccaacaatctttccattctcccttttgtagtgattcctgagctt
tggggggcgagttacacgatgtaaaaggttatatctttt
gaattcctgtacactggggcattgagccttcacaaaaccaagggcctctc
ctttcattgatgtcccacaaggccatcctctactatatatgtggctggag
ccatgagtccctccttgagtactcttcggttgatggtttaatctctggga
gctctggggatactggctggttcatatttttgttcctcttatggggttgc
aaaccccttcagctccttgcgtcctgtttttagctcttatattggggaca
ctgtgttcagtccaatgaattgttgtgagaatccactgaactcatgtgct
caggcccacacatatataacacataacataatttttaataaaacaaacag
tattataagctcatttaatatttgcaggaaatagccaggctaaaatcaac
aaggaattttcagatagaaaatttaaatgacttgatttaaagaaactcag
tgaagtagaagaaaccacagggaagggttttaggaaaatgccagtgcaaa
ttaacaaagagacagatggcattttaaaaaatcagcagcaattctcatca
gaaagatgcatttagtgaaactataaatgctatataaataacagaataaa
tcgactgaagaaattgctggtggcatgaagatgggctattttgaatatac
agcttaaagaagaaaataaagattaacaagaactttgagacaatatttaa
gagtagttagttcagtttggggttccagaagaatgtgggaatggaaaaaa
aatgattttatctgttagtcaaaaggatgttagatcagaaacagaggtgg
tcaaggaattagtattaacgggtgataaatttattagttgagaaataatt
ttagttctacctgtaaccttccaccctagttagagtcactaaagatctaa
tcaattaatctgccttggagaagggtcatcattaagtgtggccttccttc
agaaactttcccttcacaatacactcatattttgctgtccgttcttttgg
tttcttctcttagctcaacactgtgtataactgagcctcccaagcaatct
atctcagaggtgggcagtagcttaggtcccccgcctgcccacatccattc
ccttggaatgccacagggcacacagaaagtccctccttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92603768_92604554
seq2: B6Ng01-232N09.b_49_837

seq1  GAATTCCAGGTAGAGTCGAGCTTTTCTGTCATAGTGGAGCATGGAAGGTG  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCCAGGTAGAGTCGAGCTTTTCTGTCATACTGGAGCATGGAAGGTG  50

seq1  GGGATTGTGGGACTGTAAACAGGTAAGCCAGAGGAGCTTGCTATCCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGTGGGACTGTAAACAGGTAAGCCAGAGGAGCTTGCTATCCAGGC  100

seq1  ATATAGTTGAAGTTAGGAGCTGTAAATTCACTGAACAGACTCTTGTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTGAAGTTAGGAGCTGTAAATTCACTGAACAGACTCTTGTTCAA  150

seq1  AAAGATATAGCATAGAGTGATAGGGAAAATGTCCAGATCAACCACTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATAGCATAGAGTGATAGGGAAAATGTCCAGATCAACCACTGACT  200

seq1  TCTACACGAACACACACACACACACACACACACACACACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACGAACACACACACACACACACACACACACACACACACACACACA  250

seq1  CACACACACAAACATGTGTATATCATACACATATACTACATATGCACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAAACATGTGTATATCATACACATATACTACATATGCACAAA  300

seq1  AAACCCCAGATTAAAAATATTTTATTTAATATCCATAAATGCATACAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCAGATTAAAAATATTTTATTTAATATCCATAAATGCATACAATT  350

seq1  TGTTTGGATCCAATCTACCTTTCATGCCCATCTCTTCAATTTTTCTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGATCCAATCTACCTTTCATGCCCATCTCTTCAATTTTTCTCTAG  400

seq1  ATTCTTGGTCTCCCTCCCAACATAATACACTTCCTTTCTGTTTTTAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGTCTCCCTCCCAACATAATACACTTCCTTTCTGTTTTTAAATT  450

seq1  TAATACCCACTGAGTTCATTTGGTGATTAGCTTCTCAGTTCTTATTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCCACTGAGTTCATTTGGTGATTAGCTTCTCAGTTCTTATTTTAC  500

seq1  CAAAGAAAAGTGGCTCTTCCTTTTCCAGAATCCATCGACTGTCAAATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAAGTGGCTCTTCCTTTTCCAGAATCCATCGACTGTCAAATAGC  550

seq1  TAATCATGGGCGTCAGACTTCATGACTCCCAACTATGATGGAATTTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATGGGCGTCAGACTTCATGACTCCCAACTATGATGGAATTTTGGA  600

seq1  TGATTTGATCTTGTGCACACAGTTCCAGCCACTGTTGCATTTGTGTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGATCTTGTGCACACAGTTCCAGCCACTGTTGCATTTGTGTGCAA  650

seq1  TTGCACTATCACGTCGCGCAGATTTCGTTTTGCTAAAGATAGCTGCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTATCACGTCGCGCAGATTTCGTTTTGCTAAAGATAGCTGCTGCC  700

seq1  TCTGCTCCAACAATCTTTCCATTCTCCCTTTTGTAGTGATTCCTGAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCAACAATCTTTCCATTCTCCCTTTTGTAGTGATTCCTGAGCTT  750

seq1  TGGGGGGCGAG-TACACGATGT-AAAGGTTTTATCTTTT  787
      ||||||||||| |||||||||| ||||||| ||||||||
seq2  TGGGGGGCGAGTTACACGATGTAAAAGGTTATATCTTTT  789

seq1: chr9_92734546_92735677
seq2: B6Ng01-232N09.g_69_1208 (reverse)

seq1  AGAAGGA--GAC--TCTCTGTGCCCTGT-GCATTTCCAGGGAATGAATGT  45
      |||||||  |||  ||| |||||||||| ||||| | |||||||| ||||
seq2  AGAAGGAGGGACTTTCTGTGTGCCCTGTGGCATTCCAAGGGAATGGATGT  50

seq1  -GGCAGGCGGGGGAACT-AGCTACTGCACAACCTCTGAGATAGA-TGCTT  92
       ||||||||||||| || ||||||||| | |||||||||||||| |||||
seq2  GGGCAGGCGGGGGACCTAAGCTACTGC-CCACCTCTGAGATAGATTGCTT  99

seq1  -GGAGGCTCAGTTATTAACACAGTG-TGAGCTAAGAGGAAGGAAACAAAA  140
       ||||||||||||||  |||||||| |||||||||| |||| || |||||
seq2  GGGAGGCTCAGTTAT--ACACAGTGTTGAGCTAAGA-GAAGAAACCAAAA  146

seq1  GACGGGAACAGCAAATATTGAGTGTATTGTGAA-GGAAAGTTTCTGAAGG  189
      ||  || ||||||||   ||||||||||||||| ||||||||||||||||
seq2  GAACGG-ACAGCAAAATATGAGTGTATTGTGAAGGGAAAGTTTCTGAAGG  195

seq1  AA-GCCACACTTAATGATGACCCTTCTCCAAGGCAGATTAATTGATTAGA  238
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCACACTTAATGATGACCCTTCTCCAAGGCAGATTAATTGATTAGA  245

seq1  TCTTTAGTGACTCTAACTAGGGTGGAAGGTTACAGGTAGAACTAAAATTA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTGACTCTAACTAGGGTGGAAGGTTACAGGTAGAACTAAAATTA  295

seq1  TTTCTCAACTAATAAATTTATCACCC-TTAATACTAATTCCTTGACCACC  337
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTCTCAACTAATAAATTTATCACCCGTTAATACTAATTCCTTGACCACC  345

seq1  TCTGTTTCTGATCTAACATCCTTTTGACTAACAGATAAAATCATTTTTTT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCTGATCTAACATCCTTTTGACTAACAGATAAAATCATTTTTTT  395

seq1  TCCATTCCCACATTCTTCTGGAACCCCAAACTGAACTAACTACTCTTAAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCCACATTCTTCTGGAACCCCAAACTGAACTAACTACTCTTAAA  445

seq1  TATTGTCTCAAAGTTCTTGTTAATCTTTATTTTCTTCTTTAAGCTGTATA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCTCAAAGTTCTTGTTAATCTTTATTTTCTTCTTTAAGCTGTATA  495

seq1  TTCAAAATAGCCCATCTTCATGCCACCAGCAATTTCTTCAGTCGATTTAT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATAGCCCATCTTCATGCCACCAGCAATTTCTTCAGTCGATTTAT  545

seq1  TCTGTTATTTATATAGCATTTATAGTTTCACTAAATGCATCTTTCTGATG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATTTATATAGCATTTATAGTTTCACTAAATGCATCTTTCTGATG  595

seq1  AGAATTGCTGCTGATTTTTTAAAATGCCATCTGTCTCTTTGTTAATTTGC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGCTGCTGATTTTTTAAAATGCCATCTGTCTCTTTGTTAATTTGC  645

seq1  ACTGGCATTTTCCTAAAACCCTTCCCTGTGGTTTCTTCTACTTCACTGAG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCATTTTCCTAAAACCCTTCCCTGTGGTTTCTTCTACTTCACTGAG  695

seq1  TTTCTTTAAATCAAGTCATTTAAATTTTCTATCTGAAAATTCCTTGTTGA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAAATCAAGTCATTTAAATTTTCTATCTGAAAATTCCTTGTTGA  745

seq1  TTTTAGCCTGGCTATTTCCTGCAAATATTAAATGAGCTTATAATACTGTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCCTGGCTATTTCCTGCAAATATTAAATGAGCTTATAATACTGTT  795

seq1  TGTTTTATTAAAAATTATGTTATGTGTTATATATGTGTGGGCCTGAGCAC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTAAAAATTATGTTATGTGTTATATATGTGTGGGCCTGAGCAC  845

seq1  ATGAGTTCAGTGGATTCTCACAACAATTCATTGGACTGAACACAGTGTCC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCAGTGGATTCTCACAACAATTCATTGGACTGAACACAGTGTCC  895

seq1  CCAATATAAGAGCTAAAAACAGGACGCAAGGAGCTGAAGGGGTTTGCAAC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATAAGAGCTAAAAACAGGACGCAAGGAGCTGAAGGGGTTTGCAAC  945

seq1  CCCATAAGAGGAACAAAAATATGAACCAGCCAGTATCCCCAGAGCTCCCA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAAGAGGAACAAAAATATGAACCAGCCAGTATCCCCAGAGCTCCCA  995

seq1  GAGATTAAACCATCAACCGAAGAGTACTCAAGGAGGGACTCATGGCTCCA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAAACCATCAACCGAAGAGTACTCAAGGAGGGACTCATGGCTCCA  1045

seq1  GCCACATATATAGTAGAGGATGGCCTTGTGGGACATCAATGAAAGGAGAG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATATATAGTAGAGGATGGCCTTGTGGGACATCAATGAAAGGAGAG  1095

seq1  GCCCTTGGTTTTGTGAAGGCTCAATGCCCCAGTGTACAGGAATTC  1132
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGTTTTGTGAAGGCTCAATGCCCCAGTGTACAGGAATTC  1140