BAC Information

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BAC

Clone NameB6Ng01-233O17
Chromosome9 (Build37)
Map Location 118,901,439 - 119,067,409
singlet/doubletdoublet
Overlap geneCtdspl, Vill, Plcd1, Dlec1, Acaa1b
Upstream geneLOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4, Itga9, LOC100039768
Downstream geneEG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233O17.bB6Ng01-233O17.g
ACCGA045836GA045837
length1,150970
definitionB6Ng01-233O17.b B6Ng01-233O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,901,439 - 118,902,566)(119,066,858 - 119,067,409)
sequence
gaattcttccaacccttctgtcgccttattttgcacaacgttgcaacagc
tcagagccatgcagagccacccagaggagctgtaaacaggaagggggacc
aaccacagctggatttcagaagaggcactctgtgagagctgaggagggaa
ggcttgtcatcagacctctgccaaagtctcagggatgcaggaaccacggt
gtgggctgggagcccgctgaacactagaaacagccgggttctggtagctg
actaagggggtgcaggcagaaatgaaagacctggttgttccctcttgtaa
ggtcttgggagggacatggaagttgtcaggtagcagagccctgagatctt
tctgagacccctgaaaatggcccgaagactccctgagagctgccatctcc
gattagttcaagtgtgttctcaaagtacctggtcgccttggcagagtgga
gctctgtgtaggaggaaccacgtgctgttccttattccatgttcaatccc
caatgtgtggaatctattttgaaatatgagctctatgcgatttcatctag
agaggttcttcagggtgatttgttaattttttccccccatctatgaaagt
actgtgtcttagaaaattcatgttaaggaacaaatactttcatgaaagtt
ctttaaattatctctcctaaagtcatactcaggaaatccaaaatggataa
ttaaaaaactgtaatccatgggaggtgacattctgacataaactgttagc
aaggtgctgtgaaccacgacgagtgtgccttgctgtctgctgttcctctg
ctttctctcagaaaataaaacacccaccgttgtaagccagtgtgccatcc
aacagcatggactcacaccgttgtaagccagtgtgccatccaacagcatg
gactcacacgtttgtaagccagtgtgccatccaacaaccattggacctca
ccaagcatcccctcccttctgacggcatcctgccggacccagtctgaaaa
cagaatggtaatgcccccacttcgaacgaagggttaccacgccgcaacct
ccccttgttccgaacttagaaaatgacccaggagccaatcaaaggcactt
atcgagccaagtcctgggggaccttggagtttcatgggcccggacaccca

gaattcaacattttgacattacaacaggcacactcagcatccgtgtaagc
aacttacaaacaaacaaacaaaaataaaacacaaaatctcatttctcttc
gggccttagataagctatgtttttgtcttgggtggctgtccttggcctag
ccccatgcagacagtgggctgtgggttctacatgcgtcctaggaactgat
ggcatcacaggcttccccccgggcttctaagaggtccacaaaggcgagca
ctggaagacagtggggaggggacaaggaaggaggcctggtgcagcgtgct
ctctggggtgtctaaagagcacacgaccctgcacttaggaagtctgtgcc
cttggacatggtgacaggaaggctagatcagcctctgggtgtctaagact
ccagtgctcctgccctggaaagcacgggcaggtgagtgtgcatattatgt
gtagggcagaggttgatattggatgccattctaaaccccttcctactctg
ctttctgagatggggtttctgtctgaacacagtgatttgcctggggtagg
tagccactttgccccaaggatcctctgcctttcccacctgagcactaaag
gtcatgggacccttgtcaagcctgcccagccttgtgcactggggatctga
cctctggcctcccactttgcagggcaagccccgttaccttctgagccctc
tcccagcctcctctccttttcatgttttgggatcccctggggtctgagaa
aaacactgttgtaactgccatggtttggggctgacctgtcactgtgactg
gggaacccggttcttactctttaaggctggtaacacatttctagaatcca
ggaagccccggtccattcacttcaacaggaagccattgaatcagttaatg
ctttcaggcacacttgccaagtcctttgcaaacacctttcttaaggagcg
aggggagcgggtgcctgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_118901439_118902566
seq2: B6Ng01-233O17.b_48_1197

seq1  GAATTCTTCCAACCCTTCTGTCGCCTTATTTTGCACAACGTTGCAACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAACCCTTCTGTCGCCTTATTTTGCACAACGTTGCAACAGC  50

seq1  TCAGAGCCATGCAGAGCCACCCAGAGGAGCTGTAAACAGGAAGGGGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCATGCAGAGCCACCCAGAGGAGCTGTAAACAGGAAGGGGGACC  100

seq1  AACCACAGCTGGATTTCAGAAGAGGCACTCTGTGAGAGCTGAGGAGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGCTGGATTTCAGAAGAGGCACTCTGTGAGAGCTGAGGAGGGAA  150

seq1  GGCTTGTCATCAGACCTCTGCCAAAGTCTCAGGGATGCAGGAACCACGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTCATCAGACCTCTGCCAAAGTCTCAGGGATGCAGGAACCACGGT  200

seq1  GTGGGCTGGGAGCCCGCTGAACACTAGAAACAGCCGGGTTCTGGTAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGGGAGCCCGCTGAACACTAGAAACAGCCGGGTTCTGGTAGCTG  250

seq1  ACTAAGGGGGTGCAGGCAGAAATGAAAGACCTGGTTGTTCCCTCTTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGGGGTGCAGGCAGAAATGAAAGACCTGGTTGTTCCCTCTTGTAA  300

seq1  GGTCTTGGGAGGGACATGGAAGTTGTCAGGTAGCAGAGCCCTGAGATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGGGAGGGACATGGAAGTTGTCAGGTAGCAGAGCCCTGAGATCTT  350

seq1  TCTGAGACCCCTGAAAATGGCCCGAAGACTCCCTGAGAGCTGCCATCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGACCCCTGAAAATGGCCCGAAGACTCCCTGAGAGCTGCCATCTCC  400

seq1  GATTAGTTCAAGTGTGTTCTCAAAGTACCTGGTCGCCTTGGCAGAGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTTCAAGTGTGTTCTCAAAGTACCTGGTCGCCTTGGCAGAGTGGA  450

seq1  GCTCTGTGTAGGAGGAACCACGTGCTGTTCCTTATTCCATGTTCAATCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGTAGGAGGAACCACGTGCTGTTCCTTATTCCATGTTCAATCCC  500

seq1  CAATGTGTGGAATCTATTTTGAAATATGAGCTCTATGCGATTTCATCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGTGGAATCTATTTTGAAATATGAGCTCTATGCGATTTCATCTAG  550

seq1  AGAGGTTCTTCAGGGTGATTTGTTAATTTTTTCCCCCCATCTATGAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTCTTCAGGGTGATTTGTTAATTTTTTCCCCCCATCTATGAAAGT  600

seq1  ACTGTGTCTTAGAAAATTCATGTTAAGGAACAAATACTTTCATGAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCTTAGAAAATTCATGTTAAGGAACAAATACTTTCATGAAAGTT  650

seq1  CTTTAAATTATCTCTCCTAAAGTCATACTCAGGAAATCCAAAATGGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATTATCTCTCCTAAAGTCATACTCAGGAAATCCAAAATGGATAA  700

seq1  TTAAAAAACTGTAATCCATGGGAGGTGACATTCTGACATAAACTGTTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAACTGTAATCCATGGGAGGTGACATTCTGACATAAACTGTTAGC  750

seq1  AAGGTGCTGTGAACCACGACGAGTGTGCCTTGCTGTCTGCTGTTCCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCTGTGAACCACGACGAGTGTGCCTTGCTGTCTGCTGTTCCTCTG  800

seq1  CTTTCTCTCAGAAAATAAAACA-CCACCGTTGTAAGCCAGTGTGCCATCC  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTTCTCTCAGAAAATAAAACACCCACCGTTGTAAGCCAGTGTGCCATCC  850

seq1  AACAGCATGGACTCACACCGTTGTAAGCCAGTGTGCCATCCAACAGCATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATGGACTCACACCGTTGTAAGCCAGTGTGCCATCCAACAGCATG  900

seq1  GACTCACACCGTTGTAAGCCAGTGTGCCATCCAACAGC--ATGGA-CTCA  946
      |||||||||  ||||||||||||||||||||||||| |   |||| ||||
seq2  GACTCACACGTTTGTAAGCCAGTGTGCCATCCAACAACCATTGGACCTCA  950

seq1  -CAAGCATCCCCTCCCATCTGACGGCAT-CTGCC-GACCCAGTCTGAAAA  993
       ||||||||||||||| ||||||||||| ||||| |||||||||||||||
seq2  CCAAGCATCCCCTCCCTTCTGACGGCATCCTGCCGGACCCAGTCTGAAAA  1000

seq1  CAGAAGGGTAATG-CCCCACTCAGAACGAAGGGTTA-CAAGCAGCAA-CT  1040
      ||||| ||||||| |||||||  ||||||||||||| || || |||| ||
seq2  CAGAATGGTAATGCCCCCACTTCGAACGAAGGGTTACCACGCCGCAACCT  1050

seq1  CCCC-TGTTCCAGAGTTAGAAAA-GACACAGGAG-CAAGCAAAGGCACT-  1086
      |||| ||||||  | |||||||| ||| |||||| ||| |||||||||| 
seq2  CCCCTTGTTCCGAACTTAGAAAATGACCCAGGAGCCAATCAAAGGCACTT  1100

seq1  -TCCAGCCAAG-CCT-GGTGACCT--GAGTTCAA--GGCCCGG-GACCCA  1128
       || ||||||| ||| || |||||  |||||  |  |||||||  |||||
seq2  ATCGAGCCAAGTCCTGGGGGACCTTGGAGTTTCATGGGCCCGGACACCCA  1150

seq1: chr9_119066858_119067409
seq2: B6Ng01-233O17.g_476_1041 (reverse)

seq1  TGCA-GCACCCGCTCCCCTCGCCCCCTTAGCAAAGGTGTCTGCCAAGGCC  49
      |||| |||||||||||||||| | |||||  |||||||| ||| |||| |
seq2  TGCAGGCACCCGCTCCCCTCG-CTCCTTAAGAAAGGTGTTTGCAAAGGAC  49

seq1  TTG--CAGTGTGCCTG-AAGCATTAACTGA-TCAATGGCTTCCTGTTG-A  94
      |||   |||||||||| ||||||||||||| ||||||||||||||||| |
seq2  TTGGCAAGTGTGCCTGAAAGCATTAACTGATTCAATGGCTTCCTGTTGAA  99

seq1  GTGAATGGACCGGGGCTTCCTGGA-TCTAG-AATGTGTTACCAGCCTTAA  142
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  GTGAATGGACCGGGGCTTCCTGGATTCTAGAAATGTGTTACCAGCCTTAA  149

seq1  AGAGTAAG-ACCGGGTTCCCCAGTCACAGTGACAGGTCAGCCCCAAACCA  191
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGAACCGGGTTCCCCAGTCACAGTGACAGGTCAGCCCCAAACCA  199

seq1  TGGCAGTTAC-ACAGTG-TTTTCTCAGACCCCAGGGGATCCCAAAACATG  239
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  TGGCAGTTACAACAGTGTTTTTCTCAGACCCCAGGGGATCCCAAAACATG  249

seq1  -AAAGGAGAGGAGGCTGGGAGAGGGCTCAGAAGGTAAC-GGGCTTGCCCT  287
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAAGGAGAGGAGGCTGGGAGAGGGCTCAGAAGGTAACGGGGCTTGCCCT  299

seq1  GC-AAGTGGGAGGCCAGAGGTCAGATCCCCAGTGCACAAGGCTGGGCAGG  336
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGGGAGGCCAGAGGTCAGATCCCCAGTGCACAAGGCTGGGCAGG  349

seq1  CTTGACAAGGGTCCCATGACC-TTAGTGCTCAGGTGGGAAAGGCAGAGGA  385
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTGACAAGGGTCCCATGACCTTTAGTGCTCAGGTGGGAAAGGCAGAGGA  399

seq1  TCCTTGGGGCAAAGTGGCTACCTACCCCAGGCAAATCACTGTGTTCAGAC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGGGCAAAGTGGCTACCTACCCCAGGCAAATCACTGTGTTCAGAC  449

seq1  AGAAACCCCATCTCAGAAAGCAGAGTAGGAAGGGGTTTAGAATGGCATCC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCCATCTCAGAAAGCAGAGTAGGAAGGGGTTTAGAATGGCATCC  499

seq1  AATATCAACCTCTGCCCTACACATAATATGCACACTCACCTGCCCGTGCT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAACCTCTGCCCTACACATAATATGCACACTCACCTGCCCGTGCT  549

seq1  TTCCAGGGCAGGAGCAC  552
      |||||||||||||||||
seq2  TTCCAGGGCAGGAGCAC  566