BAC Information

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BAC

Clone NameB6Ng01-234L09
Chromosome9 (Build37)
Map Location 28,810,025 - 28,958,523
singlet/doubletdoublet
Overlap geneHnt, LOC625222
Upstream geneOpcml
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234L09.bB6Ng01-234L09.g
ACCGA046399GA046400
length950453
definitionB6Ng01-234L09.b B6Ng01-234L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,957,576 - 28,958,523)(28,810,025 - 28,810,483)
sequence
gaattctaacttgaaatgcttttggcttatacatggaaactattaaaatc
ttctgaaatgtcaataattaaaagcagaaacaattactataaaggccaga
catgttccatgccaaatcccaattctcccggcacacagcctcacaaggta
ggtaatttctcgtttgtgcagagtagatgactccaggtcgcataggaata
ttgcaaatgggttgaggacccagggtcttccggctatttctgtctcaaga
tattttgatttttccatttgatgctgtcagaaactcaggaactgatcatt
tgtgctggaaatagcacaacttctgccctttgtttcgatcgcttttgcca
tgtgcgattggtgaatttgattgctggccgcagaaaattgcatttgtgtc
aggagcattctgaacagatcaatgtaagaggaaaccaggcaagatcaatt
gtaatactgaaggactagtataaagagccaggcaagccacataccatcca
ctaactcgcactgtctacatatcacacaggcccttcaccataattctgta
gttaagcctcccagtatcccatgaggtcagttaatgtctgctgctagaca
tccagaagagagggaaataacactgtttgctgccagctctctgtgcacag
ggcattaaataatacaaatcattacagttgctctgtatattttcctgggt
gctgtctatggccccaacatgcatttctaaactcccaaagaagctcacta
gctacatctcctttaccgttcccattacatgactaaggaatcaaacctag
aaagttcaagctgtctgtgaccatcccatgaattgttccaaaacaatggc
tttagactgtcctctcactgctttggagtgctttgttttaaacggcttct
tccatttgttgcctttgtattcaaacctcaagctgcttgctgaaacacct

attcttctggttcatttctatgtcagagtgtcccagccaacctttgctta
gcgtaccatgggaaaatggtgttccctttgtgaactgcagattacttttg
ttccagtatcaagaggaggtacaggactttggacaccatcctcactgtca
tggtgacattctgtcattgtgtctagctagcccagaagtgtgaaccttgt
caggacctctgaagtcaatggtagccataagctctaaactttgagtgaaa
tcttaggtatcaggataagaaacaagctgagtacagttacacatgccttt
gatctcagcactcaggaggcagagacaggacaatctctgtgagtttgagg
ccagtctgttctacatagtgatttccaggacagccagaaaaaaataagaa
tagagatggatagagggaaaaagggagagggagagagaggggaagagatg
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28957576_28958523
seq2: B6Ng01-234L09.b_43_992 (reverse)

seq1  AGGTGTGTCAGCAAGCAGCTTGGAGGTTTGAAATACAAAGGCAACAAATG  50
      |||||| |||||||||||||| |||||||| |||||||||||||||||||
seq2  AGGTGTTTCAGCAAGCAGCTT-GAGGTTTG-AATACAAAGGCAACAAATG  48

seq1  GAAGAAGCCGTTAAAAACAAAGCACTCCAAAGCAGTGAGAGGAACAGTCT  100
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  GAAGAAGCCGTTTAAAACAAAGCACTCCAAAGCAGTGAGAGG-ACAGTCT  97

seq1  AAAGCCATT-TTTTGGAAC-ACTCAT-GGATGGTCACAGACAGCTTGAAC  147
      ||||||||| ||||||||| | |||| |||||||||||||||||||||||
seq2  AAAGCCATTGTTTTGGAACAATTCATGGGATGGTCACAGACAGCTTGAAC  147

seq1  TTTCTAGGTTTGATTCCTTAGTCATGTAATGGGAACGGT-AAGGAGATGT  196
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTCTAGGTTTGATTCCTTAGTCATGTAATGGGAACGGTAAAGGAGATGT  197

seq1  AGCTAGTGAGCTTCTTTTGGAGTTTAGAAATGCATGTTGGGGCCATAGAC  246
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCTAGTGAGCTTCTTTGGGAGTTTAGAAATGCATGTTGGGGCCATAGAC  247

seq1  AGCA-CCAGGAAAATATACAGAGCAACTGTAATGATTTGTATTATTTAAT  295
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAGGAAAATATACAGAGCAACTGTAATGATTTGTATTATTTAAT  297

seq1  GCCCTGTGCACAGAGAGCTGGCAGCAAACAGTGTTATTTCCCTCTCTTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTGCACAGAGAGCTGGCAGCAAACAGTGTTATTTCCCTCTCTTCT  347

seq1  GGATGTCTAGCAGCAGACATTAACTGACCTCATGGGATACTGGGAGGCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCTAGCAGCAGACATTAACTGACCTCATGGGATACTGGGAGGCTT  397

seq1  AACTACAGAATTATGGTGAAGGGCCTGTGTGATATGTAGACAGTGCGAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAGAATTATGGTGAAGGGCCTGTGTGATATGTAGACAGTGCGAGT  447

seq1  TAGTGGATGGTATGTGGCTTGCCTGGCTCTTTATACTAGTCCTTCAGTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGATGGTATGTGGCTTGCCTGGCTCTTTATACTAGTCCTTCAGTAT  497

seq1  TACAATTGATCTTGCCTGGTTTCCTCTTACATTGATCTGTTCAGAATGCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTGATCTTGCCTGGTTTCCTCTTACATTGATCTGTTCAGAATGCT  547

seq1  CCTGACACAAATGCAATTTTCTGCGGCCAGCAATCAAATTCACCAATCGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACAAATGCAATTTTCTGCGGCCAGCAATCAAATTCACCAATCGC  597

seq1  ACATGGCAAAAGCGATCGAAACAAAGGGCAGAAGTTGTGCTATTTCCAGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCAAAAGCGATCGAAACAAAGGGCAGAAGTTGTGCTATTTCCAGC  647

seq1  ACAAATGATCAGTTCCTGAGTTTCTGACAGCATCAAATGGAAAAATCAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGATCAGTTCCTGAGTTTCTGACAGCATCAAATGGAAAAATCAAA  697

seq1  ATATCTTGAGACAGAAATAGCCGGAAGACCCTGGGTCCTCAACCCATTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGAGACAGAAATAGCCGGAAGACCCTGGGTCCTCAACCCATTTG  747

seq1  CAATATTCCTATGCGACCTGGAGTCATCTACTCTGCACAAACGAGAAATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTCCTATGCGACCTGGAGTCATCTACTCTGCACAAACGAGAAATT  797

seq1  ACCTACCTTGTGAGGCTGTGTGCCGGGAGAATTGGGATTTGGCATGGAAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCTTGTGAGGCTGTGTGCCGGGAGAATTGGGATTTGGCATGGAAC  847

seq1  ATGTCTGGCCTTTATAGTAATTGTTTCTGCTTTTAATTATTGACATTTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGCCTTTATAGTAATTGTTTCTGCTTTTAATTATTGACATTTCA  897

seq1  GAAGATTTTAATAGTCTCCATGTATAAGCCAAAAGCATTTCAAGTTAGAA  945
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAGATTTTAATAGTTTCCATGTATAAGCCAAAAGCATTTCAAGTTAGAA  947

seq1  TTC  948
      |||
seq2  TTC  950

seq1: chr9_28810025_28810483
seq2: B6Ng01-234L09.g_73_531

seq1  GAATTCATTCTTCTGGTTCTTTTCTATGTCAGAGTGTCCCAGCCAACCTT  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTCTGGTTCATTTCTATGTCAGAGTGTCCCAGCCAACCTT  50

seq1  TGCTTAGCGTACCATGGGAAAATGGTGTTCCCTTTGTGAACTGCAGATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGCGTACCATGGGAAAATGGTGTTCCCTTTGTGAACTGCAGATTA  100

seq1  CTTTTGTTCCAGTATCAAGAGGAGGTACAGGACTTTGGACACCATCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTCCAGTATCAAGAGGAGGTACAGGACTTTGGACACCATCCTCA  150

seq1  CTGTCATGGTGACATTCTGTCATTGTGTCTAGCTAGCCCAGAAGTGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGGTGACATTCTGTCATTGTGTCTAGCTAGCCCAGAAGTGTGAA  200

seq1  CCTTGTCAGGACCTCTGAAGTCAATGGTAGCCATAAGCTCTAAACTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCAGGACCTCTGAAGTCAATGGTAGCCATAAGCTCTAAACTTTGA  250

seq1  GTGAAATCTTAGGTATCAGGATAAGAAACAAGCTGAGTACAGTTACACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCTTAGGTATCAGGATAAGAAACAAGCTGAGTACAGTTACACAT  300

seq1  GCCTTTGATCTCAGCACTCAGGAGGCAGAGACAGGACAATCTCTGTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGATCTCAGCACTCAGGAGGCAGAGACAGGACAATCTCTGTGAGT  350

seq1  TTGAGGCCAGTCTGTTCTACATAGTGATTTCCAGGACAGCCAGAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAGTCTGTTCTACATAGTGATTTCCAGGACAGCCAGAAAAAAA  400

seq1  TAAGAAGAGAGATGGAGAGAGGGAAAAAGGGAGAGGGAGAGAGAGGGGAA  450
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAGAATAGAGATGGATAGAGGGAAAAAGGGAGAGGGAGAGAGAGGGGAA  450

seq1  GAGATGGGG  459
      |||||||||
seq2  GAGATGGGG  459