BAC Information

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BAC

Clone NameB6Ng01-236A09
Chromosome9 (Build37)
Map Location 94,085,214 - 94,086,345
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674371, LOC384967
Downstream geneEG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236A09.bB6Ng01-236A09.g
ACCGA047348GA047349
length1,2071,126
definitionB6Ng01-236A09.b B6Ng01-236A09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagcccattttttagtgggcgttatttgatt
ttctggagtccatcttcttgagttctttacatatatattggatattagtc
ccctatctgatttaggttaggtaaagatcctttcccaatctgttggtggc
ctttttgtcttattgatgatgtcttttgccttacagaagctttgcaattt
tatgaggtcctatttgttgattctttatcttatagcacaagccattgctg
ttctattcaggaatttttcccatgcaccatatcttctaggctttccccca
ctttctcctctataagcttcactttctctggttttatgtagagttccttg
atccacttagatttgatgttagtacaaggagataggaatggatcaagttg
cattcttctacatgttaaccaccagttgtgccagcaccatttgttgaaaa
tgctgtcttttttccactggatggttttagctcccttgtcaaagatcaag
tgaccataggtgtgtgggttcaattcttggtcttcaattctattccattg
gtctacttgtctgtcactataccagtaccatgcagtttttatcacaattg
ctctatagtacagctttaggtcaggcatggtgattccaccagaggttctt
ttatcattgagaagagtttttgctatccaaggttttttgttattccacat
gaatttgcagattgccctttctaatcagttgaagaattgagttggaattt
tgaaagggattgcattgaatctgtagattgcttttggcaagatagccatt
tttactatattgatcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttcttcagagacttgaagttcctatcat
acagatctttcacttccttagttagagtcacttcaaggtattttatatta
tttttgactattgagatggtgttgtttccctgaatttctttctcagcctg
tttattcctttgggtagaggaaaggcattggacttgtttggagtaatttt
tctatccagcctacttccactgagctgtttatcagttaggagtctctgtg
aatttagtcacttatttacatctatcatccgcaaagataagtgactcttc
cttccaatgatcggatcattgggtcaatgtcttggccggaacttcatata
aagttga

gaattctagtgtcaaaaattagctgaagaatgtttatccattagtagatc
actgttttatttacccaaaatgaaatgtggatataacatatgtcatctcc
caaatctgctgaattaaatatgctcaaaactctacttaagaaatttaaaa
gatgctaagttattttcttatttattagtctcacagtctgacactgcaca
tctccagctggaaggaactgaaaacctgacaccaaggtgccagactgaaa
ggcagatggtgatttctagcaactaatgcccggctgctggtgaatagtga
aaaaatttatctgggaccaccttataccttgatgaataaagcatcccaca
ttagatttctggagctttctataagaaaaaaatcatatttatttacagaa
tagaggaaagggtgaagtgtgtgtgaagtgtgggaccacgtagagactag
agggaattctctaatccatttctttagacgggctggcagccctttcttta
gagaaaaaaaaaactttgcagggtttttaaatatttaatatacatgactg
ctttatagctcaaggaaaacctgtggttctttattgccaaatatttcaga
gcttatctcaacttctatggaattttttttaaatgtgtattatttctaaa
ctataagagtagataaaaaaaatcagtgacttggggcaacaggataattc
ttcgcaaaattaaaaaactaaatattaaaactttagtaccactgattttt
tcagctgaatgaaaatgttttttgttactgagacttactcattatcattt
cattaatatgtactgggtgaccatccaacatgacatttttgaatttaaaa
gtaggggagtcaatagttatgtggcctctgttgtcaacaatgaataattt
agtgtagacagaacaatcagacagatgtgatggcttgtcaggagccgtga
tttctatgagggtggagagagctcattcgaatgtgatgatgcttaaaacg
ttaaagagaagaaaaaactgtgaaaagtctctcatgatgtcagtatacat
tgaccacttatattaatcaacttccatagtcctaacttataattgtatat
tgtctaggcaatgaaagaaaccaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_94085214_94086345
seq2: B6Ng01-236A09.g_69_1194

seq1  GAATTCTAGTGTCAAAAATTAGCTGAAGAATGTTTATCCATTAGTAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTGTCAAAAATTAGCTGAAGAATGTTTATCCATTAGTAGATC  50

seq1  ACTGTTTTATTTACCCAAAATGAAATGTGGATATAACATATGTCATCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTATTTACCCAAAATGAAATGTGGATATAACATATGTCATCTCC  100

seq1  CAAATCTGCTGAATTAAATATGCTCAAAACTCTACTTAAGAAATTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGCTGAATTAAATATGCTCAAAACTCTACTTAAGAAATTTAAAA  150

seq1  GATGCTAAGTTATTTTCTTATTTATTAGTCTCACAGTCTGACACTGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAAGTTATTTTCTTATTTATTAGTCTCACAGTCTGACACTGCACA  200

seq1  TCTCCAGCTGGAAGGAACTGAAAACCTGACACCAAGGTGCCAGACTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCTGGAAGGAACTGAAAACCTGACACCAAGGTGCCAGACTGAAA  250

seq1  GGCAGATGGTGATTTCTAGCAACTAATGCCCGGCTGCTGGTGAATAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGGTGATTTCTAGCAACTAATGCCCGGCTGCTGGTGAATAGTGA  300

seq1  AAAAATTTATCTGGGACCACCTTATACCTTGATGAATAAAGCATCCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTATCTGGGACCACCTTATACCTTGATGAATAAAGCATCCCACA  350

seq1  TTAGATTTCTGGAGCTTTCTATAAGAAAAAAATCATATTTATTTACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTCTGGAGCTTTCTATAAGAAAAAAATCATATTTATTTACAGAA  400

seq1  TAGAGGAAAGGGTGAAGTGTGTGTGAAGTGTGGGACCACGTAGAGACTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAAGGGTGAAGTGTGTGTGAAGTGTGGGACCACGTAGAGACTAG  450

seq1  AGGGAATTCTCTAATCCATTTCTTTAGACGGGCTGGCAGCCCTTTCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTCTCTAATCCATTTCTTTAGACGGGCTGGCAGCCCTTTCTTTA  500

seq1  GAGAAAAAAAAAACTTTGCAGGGTTTTTAAATATTTAATATACATGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAAAAAACTTTGCAGGGTTTTTAAATATTTAATATACATGACTG  550

seq1  CTTTATAGCTCAAGGAAAACCTGTGGTTCTTTATTGCCAAATATTTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAGCTCAAGGAAAACCTGTGGTTCTTTATTGCCAAATATTTCAGA  600

seq1  GCTTATCTCAACTTCTATGGAATTTTTTTTAAATGTGTATTATTTCTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCTCAACTTCTATGGAATTTTTTTTAAATGTGTATTATTTCTAAA  650

seq1  CTATAAGAGTAGATAAAAAAAATCAGTGACTTGGGGCAACAGGATAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGAGTAGATAAAAAAAATCAGTGACTTGGGGCAACAGGATAATTC  700

seq1  TTCGCAAAATTAAAAAACTAAATATTAAAACTTTAGTACCACTGATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCAAAATTAAAAAACTAAATATTAAAACTTTAGTACCACTGATTTTT  750

seq1  TCAGCTGAATGAAAATGTTTTTTGTTACTGAGACTTACTCATTATCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGAATGAAAATGTTTTTTGTTACTGAGACTTACTCATTATCATTT  800

seq1  CATTAATATGTACTGGGTGACCATCCAACATGACATTTTTGAATTTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATATGTACTGGGTGACCATCCAACATGACATTTTTGAATTTAAAA  850

seq1  GTAGGGGAGTCAAATAGTTATGTGGCCTCTGTTGTCAACAATGAATAATT  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGAGTC-AATAGTTATGTGGCCTCTGTTGTCAACAATGAATAATT  899

seq1  TAGTGTAGACAGAACAATCAGACAGATGTGATGGCTTGTCAGGAGCCGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAGTGTAGACAGAACAATCAGACAGATGTGATGGCTTGTCAGGAGCCGT-  948

seq1  GATTTCTATGAGGGTGGAGAGAGCTCATTCGAATGTGATGATGCTAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GATTTCTATGAGGGTGGAGAGAGCTCATTCGAATGTGATGATGCTTAAAA  998

seq1  CGTTAAAGGAGAGAAAAAACTGTGAAAAGTCTCTCATGATGGTCAGGTTA  1050
      ||||||||   ||||||||||||||||||||||||||||| |||||  ||
seq2  CGTTAAAGAGAAGAAAAAACTGTGAAAAGTCTCTCATGAT-GTCAG--TA  1045

seq1  TACATTTGAACCACTTATATT-ATCAACTTCATTAAGTTCTAACTTATAA  1099
      ||||||   |||||||||||| |||||||||  | ||| |||||||||||
seq2  TACATT--GACCACTTATATTAATCAACTTCCAT-AGTCCTAACTTATAA  1092

seq1  -TGTATATTGTCTAGGAAAATGAAAGAAA-CAATT  1132
       |||||||||||||||  ||||||||||| |||||
seq2  TTGTATATTGTCTAGG-CAATGAAAGAAACCAATT  1126


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