BAC Information

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BAC

Clone NameB6Ng01-236C09
Chromosome8 (Build37)9 (Build37)
Map Location 25,124,461 - 25,124,859103,813,476 - 103,813,717
singlet/doubletsingletsinglet
Overlap geneZmat4
Upstream geneAnk1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1, LOC100040931
Downstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236C09.bB6Ng01-236C09.g
ACCGA047438GA047439
length3931,179
definitionB6Ng01-236C09.b B6Ng01-236C09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,124,461 - 25,124,859)(103,813,476 - 103,813,717)
sequence
taaaatagaaaagtaatgctttgcttttaaggtgttgaacaaaatcttga
gtatttatgagcattgatttaaccaaaggtaaattggtattgttgggcag
cattatctagatcacattaaacctctggtacatggaggtccacagtagtc
cacatttctcctgctgctgtatccccaagagaggatgcagggaggaaagt
aaaggtaatactgaatcctataagccaggagcccacactactcagtttga
gacccctgtaaagacaggggagtctatgctaacttgtatggtctctgtga
agtagcttgtcattcgccattgtttccacagcttccacactgcattctca
gccttgaaggggtcagggagaacatagtgggggggagggggga
gaattccagtgaaatgtgaccaggaagcagccaggcgtcactgtcctaat
catttgacaaactagacttcaaaataatactagtcagaaaagataaagag
ggacacttaattctaattaagggaacaggtaaccaagaagacatttctta
tcctaaacatgtttactgaaatctggggcattgcatttcataaaacaaaa
gaaaacaaaagaaaacaaaacactaccattggaattaaagactcagataa
acgtctacccattaatagtatgtggtttcaataccccactttccccaata
aacaggtcatctgaacaaaaattaaacatcaggattgaaggactaacatc
aggattgaaggacttgacagttatctaccgaatattccacacaaatacca
gagaatacatattctagccaggatggcatagaagcctttctgaagtagat
aatatcctgtaacagaaagtaaatgcttccaaatttgaagagactgaaat
cactccttgtgtactacctcaaaagaatgaaataaaacctaaagttgaca
gcacacatatctctggtagagacacaaactctcgccaagatgaaacaact
cattagtaatgataagtgcgtcaaagaggaaaccaagaaagaaatgtaga
actttttgcaattaaatgaaaatgaagacacaaaaccaaagaccccctgg
aacatactgaaagctgtcctgtgaggtaatttatagctctaagtgcataa
atggctcagtggttaagagtactgagttctcttccagaggtcctgagttc
aaatcccagcaaccacacggtgactcacaaccatctgtaatgggttccaa
tgtcctcttctggtaggtctgaagagagtgacagtgtgctcatatacatt
aattaagtaaataaaacttaaaaaaaaatttttccctttgccaggcaatg
gtagcgcacgcctttattccagcacttgtgagcagatttctgaggccagc
ctgtcgacagattgagcttctagacagtcaggcacacagagagactctgt
cttgatcatacagtttcaaatgttagaaaacatgacaaacccaattcagg
ctagctaactccagaataattaaaagtccgagccgaattaaggatggaac
agaaagtaattttttcaaaaattgaacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_25124461_25124859
seq2: B6Ng01-236C09.b_42_440 (reverse)

seq1  TCCCCCCTCCCCCCCACTATGTTCTCCCTGACCCCTTCAAGGCTGAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTCCCCCCCACTATGTTCTCCCTGACCCCTTCAAGGCTGAGAAT  50

seq1  GCAGTGTGGAAGCTGTGGAAACAATGGCGAATGACAAGCTACTTCACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGGAAGCTGTGGAAACAATGGCGAATGACAAGCTACTTCACAGA  100

seq1  GACCATACAAGTTAGCATAGACTCCCCTGTCTTTACAGGGGTCTCAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATACAAGTTAGCATAGACTCCCCTGTCTTTACAGGGGTCTCAAACT  150

seq1  GAGTAGTGTGGGCTCCTGGCTTATAGGATTCAGTATTACCTTTACTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTGTGGGCTCCTGGCTTATAGGATTCAGTATTACCTTTACTTTCC  200

seq1  TCCCTGCATCCTCTCTTGGGGATACAGCAGCAGGAGAAATGTGGACTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCATCCTCTCTTGGGGATACAGCAGCAGGAGAAATGTGGACTACT  250

seq1  GTGGACCTCCATGTACCAGAGGTTTAATGTGATCTAGATAATGCTGCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACCTCCATGTACCAGAGGTTTAATGTGATCTAGATAATGCTGCCCA  300

seq1  ACAATACCAATTTACCTTTGGTTAAATCAATGCTCATAAATACTCAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACCAATTTACCTTTGGTTAAATCAATGCTCATAAATACTCAAGAT  350

seq1  TTTGTTCAACACCTTAAAAGCAAAGCATTACTTTTCTATTTTAGAATTC  399
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAACACCTTAAAAGCAAAGCATTACTTTTCTATTTTAGAATTC  399

seq1: chr9_103813476_103813717
seq2: B6Ng01-236C09.g_816_1244 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  ACGTTCAATTTTTGAAAAAATTACTTTCTGTTCCATCCTTAATTCGGCTC  50

seq1  --------------------------------------------------  0
                                                        
seq2  GGACTTTTAATTATTCTGGAGTTAGCTAGCCTGAATTGGGTTTGTCATGT  100

seq1  ------ACGTT--CAATTTT----TGAAGTCA-----TCTCTATTTGTCT  33
            || ||   || | |    | ||| ||     ||||| | || ||
seq2  TTTCTAACATTTGAAACTGTATGATCAAGACAGAGTCTCTCTGTGTGCCT  150

seq1  GTCTGTCCA--------------TGACA-------TTTATAACTCTTCT-  61
      | ||||| |               ||||        | | || ||| || 
seq2  GACTGTCTAGAAGCTCAATCTGTCGACAGGCTGGCCTCAGAAATCTGCTC  200

seq1  ---AGTG--------------------ACCTT--------AAAAAAAAAA  80
         ||||                    ||| |        |||   ||||
seq2  ACAAGTGCTGGAATAAAGGCGTGCGCTACCATTGCCTGGCAAAGGGAAAA  250

seq1  A---------AAGATCTAT--------TTTATGTATGTGAGTACACTGTC  113
      |         ||| | |||        || |||||| |||| ||||||||
seq2  ATTTTTTTTTAAGTTTTATTTACTTAATTAATGTATATGAGCACACTGTC  300

seq1  AATCTCTTCAGACACACCAGAAGAGGGCA-TCAATCCCATTACAAATGGT  162
      | |||||||||||  ||||||||||| || |  | ||||||||| |||||
seq2  ACTCTCTTCAGACCTACCAGAAGAGGACATTGGAACCCATTACAGATGGT  350

seq1  TGATCCCATACCATGTGGTTGCTGGAAATTGAACTCAGGACCTCTGGAAG  212
      || |     ||| |||||||||||| | ||||||||||||||||||||||
seq2  TG-TGAGTCACCGTGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAG  399

seq1  AGCAGTCAGTGCTCTTAACCGCTGAGCCAT  242
      || | ||||| ||||||||| |||||||||
seq2  AGAACTCAGTACTCTTAACCACTGAGCCAT  429