BAC Information

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BAC

Clone NameB6Ng01-236I02
Chromosome9 (Build37)
Map Location 78,813,174 - 78,814,344
singlet/doubletsinglet
Overlap genenone
Upstream geneElovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236I02.bB6Ng01-236I02.g
ACCGA047707GA047708
length8731,170
definitionB6Ng01-236I02.b B6Ng01-236I02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacagaggaagaatgaagaaatgttcaatttctttagttatc
agggtaatacaaatcaaaatgactttgagaatccatcttacacccagaat
ggctaagatcaaacactcaagtgacagcacatgctggtgaggatgtgaag
caaggagaacactcctttattgctggtgagagggaaaactcgtacaacca
ccttgaaaatcaattggcagtttctcagaaaattgggaataattctaccc
aagacctagctataccactcatggtcatatactcaaaagatggcccactc
aaccccagggacacttgctcaactatgttcatagaagctttattcataac
agccagaaactgaaaaaaatctaaatgccccttggctgaagagtggataa
agaaattgtggtatatctacacaatgaaatactattcagctattaaaagc
aaaaacatcatgaaaattacaggcaaattgatggaacttgagactatcat
gctgagtgaggaaacccagaccctgaaacataggccttataaatggacat
tagccataaagtacaggataatacatagactcaatgaaattttgtaataa
agagaatcgaagggacgatgcacaaatctcagtcagaaggggaaacctaa
tagccattggcaggtgaagagtggtatgagaataaggatcaagtatgggg
gaggggaacaggagagtgctgggagtgagaatgtaaatcagtggtggcaa
gcatcactggggactagatggagacctagaactggataagcctttggaaa
gtctatgggtttgaccctagctggaaattccctgccagtcattgggggga
tattgattgaaaaaggttatccc
gaattctttctgaggctttgcatggttaataagacatgtggattccagct
gtttctcagacgggaccacagtttgcagttcccagaatgaaggatggctt
tccacctaacgaatctggaagattctcttggcaggttgtcatgatataag
ctagatatttccagttattctttatttttattgttttctaaaaccagctc
catctctcctagaaattcggaaagtgcttctaaaggttgcaataggaaat
gagatttcttgtcattccttcaatgtctttttctcatttactttcataaa
cgtggccttcattactttttggatgaggcctctgtctatgtctcactgcc
acccgctggtggtgactgctgtcggtcatactgcttccaaagcaaaccgt
gcatccacgcaagcgcagaggaggtggaacaatggtcgatgccaagtggg
agcagcaatagcatcttttctgaaagtttttataaacagcaaccatatcg
caaacctcacggatgattgattaaatgaccaaacttcagtacagactcac
ccgctccacttctgtcattcagacactgccaatgctgtacatgacttcca
ctcctccatatctaatgagagattaaggaaattttgttgtttttctacta
aatcatggagcattttctggtgcctgtaggcatatggtatgatttatcca
ttatgtactatcttcaggaccacccacaaaaaaagtattcacataaattt
ctctgatgtgaaaatgtttagtgtgcatggattaaagcattatttattga
gtatgctatccacatagtcttttgtattattttaaaattaatttttaggc
taacatacaaagtaacaggtttcatcatggcagttttttgcacatatata
tcaacatactaagttcctgtgctattctctgccagagctgtcttttgcac
tgccagttctacctagctcattccctccctcctcccaggaaagaccttga
aatgttcatggattatttagtagaattctctgatgccttgtattttattt
tttttcccttaaaaaatcctctggaaaataggagttttcatacattgatt
ctgataatgtttctcttcctctaacttctcgaatctgactcaattcttaa
cccacaccaagttcccacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_78813174_78814344
seq2: B6Ng01-236I02.g_64_1233

seq1  GAATTCTTTCTGAGGCTTTGCATGGTTAATAAGACATGTGGATTCCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGAGGCTTTGCATGGTTAATAAGACATGTGGATTCCAGCT  50

seq1  GTTTCTCAGACGGGACCACAGTTTGCAGTTCCCAGAATGAAGGATGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCAGACGGGACCACAGTTTGCAGTTCCCAGAATGAAGGATGGCTT  100

seq1  TCCACCTAACGAATCTGGAAGATTCTCTTGGCAGGTTGTCATGATATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTAACGAATCTGGAAGATTCTCTTGGCAGGTTGTCATGATATAAG  150

seq1  CTAGATATTTCCAGTTATTCTTTATTTTTATTGTTTTCTAAAACCAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATATTTCCAGTTATTCTTTATTTTTATTGTTTTCTAAAACCAGCTC  200

seq1  CATCTCTCCTAGAAATTCGGAAAGTGCTTCTAAAGGTTGCAATAGGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCTAGAAATTCGGAAAGTGCTTCTAAAGGTTGCAATAGGAAAT  250

seq1  GAGATTTCTTGTCATTCCTTCAATGTCTTTTTCTCATTTACTTTCATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTCTTGTCATTCCTTCAATGTCTTTTTCTCATTTACTTTCATAAA  300

seq1  CGTGGCCTTCATTACTTTTTGGATGAGGCCTCTGTCTATGTCTCACTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCCTTCATTACTTTTTGGATGAGGCCTCTGTCTATGTCTCACTGCC  350

seq1  ACCCGCTGGTGGTGACTGCTGTCGGTCATACTGCTTCCAAAGCAAACCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCTGGTGGTGACTGCTGTCGGTCATACTGCTTCCAAAGCAAACCGT  400

seq1  GCATCCACGCAAGCGCAGAGGAGGTGGAACAATGGTCGATGCCAAGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCACGCAAGCGCAGAGGAGGTGGAACAATGGTCGATGCCAAGTGGG  450

seq1  AGCAGCAATAGCATCTTTTCTGAAAGTTTTTATAAACAGCAACCATATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAATAGCATCTTTTCTGAAAGTTTTTATAAACAGCAACCATATCG  500

seq1  CAAACCTCACGGATGATTGATTAAATGACCAAACTTCAGTACAGACTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTCACGGATGATTGATTAAATGACCAAACTTCAGTACAGACTCAC  550

seq1  CCGCTCCACTTCTGTCATTCAGACACTGCCAATGCTGTACATGACTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCCACTTCTGTCATTCAGACACTGCCAATGCTGTACATGACTTCCA  600

seq1  CTCCTCCATATCTAATGAGAGATTAAGGAAATTTTGTTGTTTTTCTACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCATATCTAATGAGAGATTAAGGAAATTTTGTTGTTTTTCTACTA  650

seq1  AATCATGGAGCATTTTCTGGTGCCTGTAGGCATATGGTATGATTTATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGGAGCATTTTCTGGTGCCTGTAGGCATATGGTATGATTTATCCA  700

seq1  TTATGTACTATCTTCAGGACCACCCACAAAAAAAGTATTCACATAAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACTATCTTCAGGACCACCCACAAAAAAAGTATTCACATAAATTT  750

seq1  CTCTGATGTGAAAATGTTTAGTGTGCATGGATTAAAGCATTATTTATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGTGAAAATGTTTAGTGTGCATGGATTAAAGCATTATTTATTGA  800

seq1  GTATGCTATCCACATAGTCTTTTGTATTATTTTAAAATTAATTTTTAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTATCCACATAGTCTTTTGTATTATTTTAAAATTAATTTTTAGGC  850

seq1  TAACATACAAAGTAACAGGTTTCATCATGGCAGTTTTTTGCACATATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATACAAAGTAACAGGTTTCATCATGGCAGTTTTTTGCACATATATA  900

seq1  TCAACATACTAAGTTCCTGTGCTATTCTCTGCCAGAGCTGTCTTTTGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATACTAAGTTCCTGTGCTATTCTCTGCCAGAGCTGTCTTTTGCAC  950

seq1  TGCCAGTTCTACCTAGCTCATTCCCTCCCTCCTCCCAGGAAAGACCTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTTCTACCTAGCTCATTCCCTCCCTCCTCCCAGGAAAGACCTTGA  1000

seq1  AATGTTCATTGGATTATTTAGTAAGATTCTTCTGATTGCCTTTGTATTTT  1050
      |||||||| ||||||||||||||  |||| ||||| |||| |||||||||
seq2  AATGTTCA-TGGATTATTTAGTAGAATTC-TCTGA-TGCC-TTGTATTTT  1046

seq1  A--TTTTTTCCCTTAAAAAAATCTCT-GAAAATAGAGTTTTTCATACAAT  1097
      |  |||||||||||||||||  |||| ||||||||   ||||||||| ||
seq2  ATTTTTTTTCCCTTAAAAAATCCTCTGGAAAATAGGAGTTTTCATAC-AT  1095

seq1  TGATTCTGATTATTGTTTCTCTTCCTCTAACTTCCTCAGATCTTGCTCAA  1147
      ||||||||| || |||||||||||||||||||| |||  ||||  |||||
seq2  TGATTCTGA-TAATGTTTCTCTTCCTCTAACTT-CTCGAATCTGACTCAA  1143

seq1  TTCCTTACCCAC-CCAAGT--CCACAT  1171
      ||| | |||||| ||||||  ||||||
seq2  TTCTTAACCCACACCAAGTTCCCACAT  1170