BAC Information

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BAC

Clone NameB6Ng01-236K05
Chromosome9 (Build37)
Map Location 101,324,017 - 101,325,092
singlet/doubletsinglet
Overlap genenone
Upstream geneIl20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065
Downstream geneEG382099, Ephb1, 9630041A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236K05.bB6Ng01-236K05.g
ACCGA047808GA047809
length7541,065
definitionB6Ng01-236K05.b B6Ng01-236K05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactaaggaaactcaaatggccgagaagcacctaaagaaatg
ttcaacatccttagtcttcagggaaatgcaaatcaaaacaaccctgagat
tctacttcataccagtcagaatatctaagatcaaaaactcaggaccacag
atgctggtgaggatatggagaaagaggaacactctgctattgttggtagg
atggtaagctggtataaccactctggaaatcagtctggcagttcctgaga
aaaatggacacagtactacctgaggacccagctataccactcctgggcat
atacccaaaagatgctccaacatgtaataaggacacatgatccactatgt
tcacagcagccatatttatatcagccagaagctggaaacaaccatgtccc
tcaacaggggaatggatacagaaaatgtgatacacttatacaatggatta
ttactcaactattaaaacaaaaacttcatgaaattcacaggcaaatggat
ggatctagaaaatatcatattaggtgaggtatctcagtcacaaaagaaca
cacatggtatgtatgttctcactgatacgtggatgttaggcaaaaagcat
gaaatacccaggatacaactcgtggactatatgaagctcaagaggaatga
agaccaaacagtggatgcgtcagtcctacttagaaggagaaacaatacaa
tcaagggaagtagaggctgagagggacttgggaggaaggaggagggagag
gggg

gaattccctaagggatatactcctggaaatgtctgtgaaggtgttcccag
agaggaaactgaggaaagaagacccaccttgagaatgggcagcagcatcc
catggtctggagcaggtggggagctggctaaaagaaaaagaagcgagaag
gtatatggagcaacagcattcatttctctgtgctttgtgacctagatacg
ctctgtcacctggtccctcagtgcctccctcaccttcttcaccacaatgc
tgtcaaactcttcctttggaagttgcccttttcatatagtttggtcacag
gagcagaaaaggtaatgaatacaatgtctaaagaccatagtggatgatgc
acaagatagctgttaccagccttctgtggggttgaggaatatggataagc
gtagaccaggggttcaggctctgcgcctgagctccgtcacagatctggaa
tgctctggatgatgacttccaggcctctctgacatgaggaagggattcga
aacacagccagatacgtgcggttggtttatgacgcctcccaggagactaa
tctgaaggctaagcagaaagccggcatttgtggccatccaggcaagggtt
agtatattaccagcgtctctacacagcacaggagctccagccccggctgg
gatgaggatggaggagcaaaaggtgagtcacatgactctgacggctgaag
tttagttaataaatttttggcttagaaacttgaatgtccacaaatgattt
aatcagccttgggcaccgttgtaggaaaggaggactcctggagagaccca
gtggttatgtgttttcaccttgacacaggctggcctggggcagccatgca
ccttagtagcatcctggacaaaggtcacatctagttttgttctcacttga
aatgatggctcagctaccccttcggattgcgtctctgagatgtgtaactt
aaggttcttgtgtgcacactcttaacatttctatcacatttttcttccag
agttactagctttggctaagagacacagtctatccattgtacttccctcg
ctccgcattctagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_101324017_101325092
seq2: B6Ng01-236K05.g_66_1130

seq1  GAATTCCCTAAGGGATATACTCCTGGAAATGTCTGTGAAGGTGTTCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAAGGGATATACTCCTGGAAATGTCTGTGAAGGTGTTCCCAG  50

seq1  AGAGGAAACTGAGGAAAGAAGACCCACCTTGAGAATGGGCAGCAGCATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAACTGAGGAAAGAAGACCCACCTTGAGAATGGGCAGCAGCATCC  100

seq1  CATGGTCTGGAGCAGGTGGGGAGCTGGCTAAAAGAAAAAGAAGCGAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTGGAGCAGGTGGGGAGCTGGCTAAAAGAAAAAGAAGCGAGAAG  150

seq1  GTATATGGAGCAACAGCATTCATTTCTCTGTGCTTTGTGACCTAGATACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGGAGCAACAGCATTCATTTCTCTGTGCTTTGTGACCTAGATACG  200

seq1  CTCTGTCACCTGGTCCCTCAGTGCCTCCCTCACCTTCTTCACCACAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCACCTGGTCCCTCAGTGCCTCCCTCACCTTCTTCACCACAATGC  250

seq1  TGTCAAACTCTTCCTTTGGAAGTTGCCCTTTTCATATAGTTTGGTCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAACTCTTCCTTTGGAAGTTGCCCTTTTCATATAGTTTGGTCACAG  300

seq1  GAGCAGAAAAGGTAATGAATACAATGTCTAAAGACCATAGTGGATGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAAAGGTAATGAATACAATGTCTAAAGACCATAGTGGATGATGC  350

seq1  ACAAGATAGCTGTTACCAGCCTTCTGTGGGGTTGAGGAATATGGATAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATAGCTGTTACCAGCCTTCTGTGGGGTTGAGGAATATGGATAAGC  400

seq1  GTAGACCAGGGGTTCAGGCTCTGCGCCTGAGCTCCGTCACAGATCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGGGTTCAGGCTCTGCGCCTGAGCTCCGTCACAGATCTGGAA  450

seq1  TGCTCTGGATGATGACTTCCAGGCCTCTCTGACATGAGGAAGGGATTCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGATGATGACTTCCAGGCCTCTCTGACATGAGGAAGGGATTCGA  500

seq1  AACACAGCCAGATACGTGCGGTTGGTTTATGACGCCTCCCAGGAGACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCCAGATACGTGCGGTTGGTTTATGACGCCTCCCAGGAGACTAA  550

seq1  TCTGAAGGCTAAGCAGAAAGCCGGCATTTGTGGCCATCCAGGCAAGGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGCTAAGCAGAAAGCCGGCATTTGTGGCCATCCAGGCAAGGGTT  600

seq1  AGTATATTACCAGCGTCTCTACACAGCACAGGAGCTCCAGCCCCGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTACCAGCGTCTCTACACAGCACAGGAGCTCCAGCCCCGGCTGG  650

seq1  GATGAGGATGGAGGAGCAAAAGGTGAGTCACATGACTCTGACGGCTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGATGGAGGAGCAAAAGGTGAGTCACATGACTCTGACGGCTGAAG  700

seq1  TTTAGTTAATAAATTTTTGGCTTAGAAACTTGAATGTCCACAAATGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTAATAAATTTTTGGCTTAGAAACTTGAATGTCCACAAATGATTT  750

seq1  AATCAGCCTTGGGCACCGTTGTAGGAAAGGAGGACTCCTGGAGAGACCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCCTTGGGCACCGTTGTAGGAAAGGAGGACTCCTGGAGAGACCCA  800

seq1  GTGGTTATGTGTTTTCACCTTGACACAGGCTGGCCTGGGGCAGCCATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTATGTGTTTTCACCTTGACACAGGCTGGCCTGGGGCAGCCATGCA  850

seq1  CCTTAGGTAGCATCCTGGACAAAGGTCACATCTAGTTTTGTTCTCACTTG  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTA-GTAGCATCCTGGACAAAGGTCACATCTAGTTTTGTTCTCACTTG  899

seq1  AAATGATGGCTCAGCTACCCCTTCGGATTGCGTCTCTGAGATGTGTAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGGCTCAGCTACCCCTTCGGATTGCGTCTCTGAGATGTGTAACT  949

seq1  TTAGGTTTCTTGTGTGCACACTCTTAACATTTCTATCACA-TTTTCTTCC  999
      | ||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  TAAGG-TTCTTGTGTGCACACTCTTAACATTTCTATCACATTTTTCTTCC  998

seq1  AGAGTTACTAGCTTTGGGCTAAGAAGACACAGTCTATCAATTGTACCCCC  1049
      ||||||||||||||| ||||||| |||||||||||||| |||||||  ||
seq2  AGAGTTACTAGCTTT-GGCTAAG-AGACACAGTCTATCCATTGTACTTCC  1046

seq1  CCCCCCCGCCTCCCCGCCATTCTAGCC  1076
      | |      ||||    ||||||||||
seq2  CTC-----GCTCC---GCATTCTAGCC  1065


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