BAC Information

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BAC

Clone NameB6Ng01-237G18
Chromosome9 (Build37)
Map Location 107,443,815 - 107,500,796
singlet/doubletdoublet
Overlap geneCyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b
Upstream geneIqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115
Downstream geneGnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237G18.bB6Ng01-237G18.g
ACCGA048383GA048384
length1,0831,059
definitionB6Ng01-237G18.b B6Ng01-237G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,443,815 - 107,444,908)(107,499,732 - 107,500,796)
sequence
gaattctacttactggagccaggtctggcaagcacagcaacaaagatggt
aaagcctaacgccacgaggtgggctgcagccccagaggcagtgcgcagag
ctcggtagatatgcgactccgtctccacagaaagggccatggtcagccca
gccgatagctgcacagcctgaaagcatcgtaggcgttggcaagagtgccc
actgtccacgcccctcactggggacagtaactcaggacagaaatggcacc
ttttcccggagaagttatgacaggagcagagtagtgccggcactaacagt
cccaacttagcagtctacctgtcaaacacctgtatttgaagtggtaacga
tcgcaccttccaagtgggaggaggaagactacaaatcccagaatgcagca
cgtcatcgttagccggaacggaaggcgtggagcactacgggaattgtatt
tcccagctgcttccctacctaagcgtgaatttctttgcacactgcctccc
catgtgcacctgacacgctgtacctccaccgtagaattttgccctcctca
cctgcttctcaggttctacgcagtgacttcctccaaaataaactggaccc
tcggccccgccagccgcgccaccgctccgttacggagtagcttcacttcc
gggtgcgatgtctacccacccgagacttcctgggacaagccccctcccat
cccatccagcggcaaccacgccccctgagtcgccctgcgcaggcgctgtt
gagttgacggctcgttgggtttgcgctcacaaacctgtgtgacctacccg
ggcctctttctctttttgacagggtattccaaggcgtagaggcgatcccc
acacgaaaaacagggattacagacttggatccagacagcgccatgggcag
cagctgccgcatcgaatgtatattcttcagcgagttccacccaacgctgg
gacccaaaattacctatcagtgccttccacactccggactagcgagggga
gggatgctctctggagctcagctgcgctggaggggtgtggatcatccacg
cgtgtctcttcatgatgagagggtacacagacc
gaattctctttcttgggcagcaagcagcaagctgtgaacagattagaccg
ttgggtatggggtgaggcaggccaactgtactaaagtaacgcaataaaca
cattatcagctgacattggaatggccccagcagacaacaggtagtcctag
accttgctgggggctcttgggtatcgccctaggggtctcaagacctgcat
tttcctcatccaagaatgctaaagtgaagattaaacgtgttagtagacga
ctacgctggttccagtgagcctctggggtactggcaatacacagtgcatt
agtggcaggaccaagctctctgaagtaaaaccaatactggctgttgtggg
caaggatgtattaattcactgaacgggtggtgtttgagctgaataagaag
gagccaatcaccaatgtctggtgacagaacattccgggatagaagaacca
gggcaacaacgtcgtggagcaggggacagaccctccaagtctgcggaaca
accaggaggctgatatggtgttatggcactatggactcctgatggtttgg
aaggtagatcccaccagccctgcttttcaccgttgagaaacagaacagag
tccacccagactaaggcctgcaagctggaccagcacccttcaagagagcc
acgtgcctctctctccgtggcctgtcaagcccttgtgaagaggagaggga
ggacccaaaacctcttaagtgctttagccatgcttcttcatttttattct
cagtacagttggccaggaacctttgttcctgttttacagatggaaaagtg
gaagccactcctgaagttcttttaacctaaagttatagtttaatactaga
catagcagtttctaatcccagttctgtccactgggccagcatggtgccca
cttgtagggctaccagatccctatggcattcattggctccagttgtgtcc
caccctaccccactatctggtatagatggtcacacagtggttgggtggtt
atctcccgtttgctgagagatggctggtatgtggagtgaagatggcctga
atggactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107443815_107444908
seq2: B6Ng01-237G18.b_48_1130

seq1  GAATTCTACTTACTGGAGCCAGGTCTGGCAAGCACAGCAACAAAGATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTACTGGAGCCAGGTCTGGCAAGCACAGCAACAAAGATGGT  50

seq1  AAAGCCTAACGCCACGAGGTGGGCTGCAGCCCCAGAGGCAGTGCGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTAACGCCACGAGGTGGGCTGCAGCCCCAGAGGCAGTGCGCAGAG  100

seq1  CTCGGTAGATATGCGACTCCGTCTCCACAGAAAGGGCCATGGTCAGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTAGATATGCGACTCCGTCTCCACAGAAAGGGCCATGGTCAGCCCA  150

seq1  GCCGATAGCTGCACAGCCTGAAAGCATCGTAGGCGTTGGCAAGAGTGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGATAGCTGCACAGCCTGAAAGCATCGTAGGCGTTGGCAAGAGTGCCC  200

seq1  ACTGTCCACGCCCCTCACTGGGGACAGTAACTCAGGACAGAAATGGCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCACGCCCCTCACTGGGGACAGTAACTCAGGACAGAAATGGCACC  250

seq1  TTTTCCCGGAGAAGTTATGACAGGAGCAGAGTAGTGCCGGCACTAACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCGGAGAAGTTATGACAGGAGCAGAGTAGTGCCGGCACTAACAGT  300

seq1  CCCAACTTAGCAGTCTACCTGTCAAACACCTGTATTTGAAGTGGTAACGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTAGCAGTCTACCTGTCAAACACCTGTATTTGAAGTGGTAACGA  350

seq1  TCGCACCTTCCAAGTGGGAGGAGGAAGACTACAAATCCCAGAATGCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCACCTTCCAAGTGGGAGGAGGAAGACTACAAATCCCAGAATGCAGCA  400

seq1  CGTCATCGTTAGCCGGAACGGAAGGCGTGGAGCACTACGGGAATTGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATCGTTAGCCGGAACGGAAGGCGTGGAGCACTACGGGAATTGTATT  450

seq1  TCCCAGCTGCTTCCCTACCTAAGCGTGAATTTCTTTGCACACTGCCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCTGCTTCCCTACCTAAGCGTGAATTTCTTTGCACACTGCCTCCC  500

seq1  CATGTGCACCTGACACGCTGTACCTCCACCGTAGAATTTTGCCCTCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCACCTGACACGCTGTACCTCCACCGTAGAATTTTGCCCTCCTCA  550

seq1  CCTGCTTCTCAGGTTCTACGCAGTGACTTCCTCCAAAATAAACTGGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCTCAGGTTCTACGCAGTGACTTCCTCCAAAATAAACTGGACCC  600

seq1  TCGGCCCCGCCAGCCGCGCCACCGCTCCGTTACGGAGTAGCTTCACTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCCCGCCAGCCGCGCCACCGCTCCGTTACGGAGTAGCTTCACTTCC  650

seq1  GGGTGCGATGTCTACCCACCCGAGACTTCCTGGGACAAGCCCCCTCCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCGATGTCTACCCACCCGAGACTTCCTGGGACAAGCCCCCTCCCAT  700

seq1  CCCATCCAGCGGCAACCACGCCCCCTGAGTCGCCCTGCGCAGGCGCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCAGCGGCAACCACGCCCCCTGAGTCGCCCTGCGCAGGCGCTGTT  750

seq1  GAGTTGACGGCTCGTTGGGTTTGCGCTCACAAACCTGTGTGACCTACCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGACGGCTCGTTGGGTTTGCGCTCACAAACCTGTGTGACCTACCCG  800

seq1  GGCCTCTTTCTCTTTTTGACAGGGTATTCCAAGGCGTAGAGGCGATCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTTTCTCTTTTTGACAGGGTATTCCAAGGCGTAGAGGCGATCCCC  850

seq1  ACACGAAAAACAGGGATTACAGACTTGGATCCAGACAGCGCCATGGGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAAAAACAGGGATTACAGACTTGGATCCAGACAGCGCCATGGGCAG  900

seq1  CAGCTGCCGCATCGAATGTATATTCTTCAGCGAGTTCCACCCAACGCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCGCATCGAATGTATATTCTTCAGCGAGTTCCACCCAACGCTGG  950

seq1  GACCCAAAATTACCTATCAGGTGCCTTCCACACTCCCGGACTAGGCGAGG  1000
      ||||||||||||||||||| |||||||||||||| |||||||| ||||||
seq2  GACCCAAAATTACCTATCA-GTGCCTTCCACACT-CCGGACTA-GCGAGG  997

seq1  GGAGGGATGCTCTCTGGAGCTCAGCTGGCCGCCTGGAGGGGTTGTGGTTC  1050
      |||||||||||||||||||||||||||  || ||||||||| ||||| ||
seq2  GGAGGGATGCTCTCTGGAGCTCAGCTG--CG-CTGGAGGGG-TGTGGATC  1043

seq1  ATCCACGCGTGTCTCTTCCATTGAATGGAGAGGGTACACAGACC  1094
      ||||||||||||||||||   |||   |||||||||||||||||
seq2  ATCCACGCGTGTCTCTTC--ATGA--TGAGAGGGTACACAGACC  1083

seq1: chr9_107499732_107500796
seq2: B6Ng01-237G18.g_64_1122 (reverse)

seq1  ACAGTCCACTCA-GCCATCCCTCACTCCCACATACCAGCCATCTCCTTCC  49
      |||||||| ||| ||||| | ||||| ||||||||||||||||||    |
seq2  ACAGTCCATTCAGGCCAT-CTTCACT-CCACATACCAGCCATCTC---TC  45

seq1  AGCAAACGGGAGATAACCACCC-ACCACTGTGTGACCATCTAATACCAGA  98
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  AGCAAACGGGAGATAACCACCCAACCACTGTGTGACCATCT-ATACCAGA  94

seq1  TAGTGGGGGTAGGGTGGGACACAACTGGAGCCCAATGAATGCCATAGGGA  148
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAGT-GGGGTAGGGTGGGACACAACTGGAG-CCAATGAATGCCATAGGGA  142

seq1  TCTGGTAGCCCTACAAGTGGGCACCCATGCTGG-CCAGTGGACAGAACTG  197
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  TCTGGTAGCCCTACAAGTGGGCA-CCATGCTGGCCCAGTGGACAGAACTG  191

seq1  GGATTAGAAACTGCTATGTCTAGTATTAAACTATAACCTTAGGTTAAAAG  247
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGATTAGAAACTGCTATGTCTAGTATTAAACTATAACTTTAGGTTAAAAG  241

seq1  AACTTCAGGAGTGGCTTCCACTTTTCCATCTGTAAAACAGGAACAAAGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGGAGTGGCTTCCACTTTTCCATCTGTAAAACAGGAACAAAGGT  291

seq1  TCCTGGCCAACTGTACTGAGAATAAAAATGAAGAAGCATGGCTAAAGCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCCAACTGTACTGAGAATAAAAATGAAGAAGCATGGCTAAAGCAC  341

seq1  TTAAGAGGTTTTGGGTCCTCCCTCTCCTCTTCACAAGGGCTTGACAGGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGGTTTTGGGTCCTCCCTCTCCTCTTCACAAGGGCTTGACAGGCC  391

seq1  ACGGAGAGAGAGGCACGTGGCTCTCTTGAAGGGTGCTGGTCCAGCTTGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGAGAGAGGCACGTGGCTCTCTTGAAGGGTGCTGGTCCAGCTTGCA  441

seq1  GGCCTTAGTCTGGGTGGACTCTGTTCTGTTTCTCAACGGTGAAAAGCAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAGTCTGGGTGGACTCTGTTCTGTTTCTCAACGGTGAAAAGCAGG  491

seq1  GCTGGTGGGATCTACCTTCCAAACCATCAGGAGTCCATAGTGCCATAACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGGATCTACCTTCCAAACCATCAGGAGTCCATAGTGCCATAACA  541

seq1  CCATATCAGCCTCCTGGTTGTTCCGCAGACTTGGAGGGTCTGTCCCCTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCAGCCTCCTGGTTGTTCCGCAGACTTGGAGGGTCTGTCCCCTGC  591

seq1  TCCACGACGTTGTTGCCCTGGTTCTTCTATCCCGGAATGTTCTGTCACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGACGTTGTTGCCCTGGTTCTTCTATCCCGGAATGTTCTGTCACCA  641

seq1  GACATTGGTGATTGGCTCCTTCTTATTCAGCTCAAACACCACCCGTTCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGGTGATTGGCTCCTTCTTATTCAGCTCAAACACCACCCGTTCAG  691

seq1  TGAATTAATACATCCTTGCCCACAACAGCCAGTATTGGTTTTACTTCAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAATACATCCTTGCCCACAACAGCCAGTATTGGTTTTACTTCAGA  741

seq1  GAGCTTGGTCCTGCCACTAATGCACTGTGTATTGCCAGTACCCCAGAGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGGTCCTGCCACTAATGCACTGTGTATTGCCAGTACCCCAGAGGC  791

seq1  TCACTGGAACCAGCGTAGTCGTCTACTAACACGTTTAATCTTCACTTTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGAACCAGCGTAGTCGTCTACTAACACGTTTAATCTTCACTTTAG  841

seq1  CATTCTTGGATGAGGAAAATGCAGGTCTTGAGACCCCTAGGGCGATACCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGGATGAGGAAAATGCAGGTCTTGAGACCCCTAGGGCGATACCC  891

seq1  AAGAGCCCCCAGCAAGGTCTAGGACTACCTGTTGTCTGCTGGGGCCATTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCCCCAGCAAGGTCTAGGACTACCTGTTGTCTGCTGGGGCCATTC  941

seq1  CAATGTCAGCTGATAATGTGTTTATTGCGTTACTTTAGTACAGTTGGCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCAGCTGATAATGTGTTTATTGCGTTACTTTAGTACAGTTGGCCT  991

seq1  GCCTCACCCCATACCCAACGGTCTAATCTGTTCACAGCTTGCTGCTTGCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACCCCATACCCAACGGTCTAATCTGTTCACAGCTTGCTGCTTGCT  1041

seq1  GCCCAAGAAAGAGAATTC  1065
      ||||||||||||||||||
seq2  GCCCAAGAAAGAGAATTC  1059