BAC Information

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BAC

Clone NameB6Ng01-238A03
Chromosome9 (Build37)
Map Location 26,173,806 - 26,261,793
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238A03.bB6Ng01-238A03.g
ACCGA048817GA048818
length1,1271,115
definitionB6Ng01-238A03.b B6Ng01-238A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,173,806 - 26,174,934)(26,260,658 - 26,261,793)
sequence
gaattcacttactcctgtaatttgactgcagcaattcttaacttcatcaa
agcttccaggagtacaccttccctattgcttgggaccatttagtgtttat
tttgttccttgtcttcattaaattcatgatcagtactacaattacttcct
ttcaattaagatctgttttgctcttccattcttagattgttgtaattatc
aggccaacctttgaattctggaagagctgaacatttactgttctcatgac
tgcatgtaacaaacctgtatgttctgccaggagctccaaagagaccaacc
aagataatgatcatgtgttctgaatgactctggaacatgtgagccccact
tttcttgtctctatgcccagacctacatcccctactgtgttaccagcacc
agcgggcgcttctccctatattaattcaacaatttcttctaacttctttg
aaaaatagaattttttgtttcagaattcctttagtatactaaaaagggaa
attttctgctagtgtgggacctccttgggtacatttcactttgcataagt
cacttcctcctcatacttgggaaggggttccacacttgaatatttccgaa
ggagttttgtttcatcttccctgcctgtgccccatccatctcatcttctt
tgttcatttggatgtctggtcttttcttttattttgtcagtgttgttctg
tttgatcttttcttctgatggcgaggaatatctcccttcattatcaactc
atggacatgagttgagtttcagttttcagaccagccacatctcagtcttc
ttatttgactctattctctccatattgagtaacagttcacagacatgctg
gggatgagtcctctccacccagtgtagaacctctagcaattctgtgtcac
actgagcattctttcagtgtataacaatgaagctatacattcttggtctt
tggtcatgttgctgtccctgcgtttctgagttcttgcacattaaggtgca
gttgagctcagtcctgatccaattctgccttaccagagcctttgaaactc
ccacttattggaaatatcccttcaacttctgaagcagatgggaatacccc
aaaagactgatgaaatatcaaactctc

gaattcctttactctgcgctgatacagttctgcgtctctaagtggtgttt
tgaaagggatgggcagagagccaactgccaaggtcaggctgtcaacttta
ttcctacctctgggctgaccagtctctctcagggatggaacactttccct
gggggccggggcagaggggacggacaaatttgtgttccatgggctgggct
cccagaaaccacactactcaccttctggggggggaaagatgttctcttgt
ctaatatcacatgacccaggagctgggcacagacaggctataacaacctc
caaggtggtgctaccagagcaaagccaggacccaaagtttctagcatgtg
ctggataatatggtcatgtacaaatatggggactggtccagagtgtcata
gatcacctggaggctagaagccactgtccctgccttccaccttgtctcct
gttttgctccatgatccctctgtgctctgagtgaccagtatgtcaggcaa
aaggcacaatttccctttccattatggttcttgtccactctcccgaggct
cttttgatctgtgtgtataatccaccatcgtctctctaaacgtttggttg
ttttttgaggaagctggtcagtctcttgctgggcacggggagatgtctat
gactgagatgaagacaggcgagggaggactgaagtcacttgtattcttgg
aactgaataaattatctgggggccgagaggcctcctccaaggtcccactt
gtgagctctctggaaagcacatgttcaaagtcattggaatttcttgtttt
gcaaaaagttttaaaaaaatcataattgtgctggatccagagaagggatg
ccctactcctcgtggtgttccgctctgatgggaaacctttcatagcctgg
tggttgctttgggacaatcactgataagtgtgaccacaaatgtgatgctg
cctttgtagctttgtctcgctgggtttctcccaccccatgcaagaaatca
tggctgtgacttctgtttctgcttcttcatttgctaacatttaagctaat
agtagtttgactggagtttgctgtcttttcactagtaaataggattctca
aaggcagttgcatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_26173806_26174934
seq2: B6Ng01-238A03.b_30_1156

seq1  GAATTCACTTACTCCTGTAATTTGACTGCAGCAATTCTTAACTTCATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTACTCCTGTAATTTGACTGCAGCAATTCTTAACTTCATCAA  50

seq1  AGCTTCCAGGAGTACACCTTCCCTATTGCTTGGGACCATTTAGTGTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCAGGAGTACACCTTCCCTATTGCTTGGGACCATTTAGTGTTTAT  100

seq1  TTTGTTCCTTGTCTTCATTAAATTCATGATCAGTACTACAATTACTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCTTGTCTTCATTAAATTCATGATCAGTACTACAATTACTTCCT  150

seq1  TTCAATTAAGATCTGTTTTGCTCTTCCATTCTTAGATTGTTGTAATTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAAGATCTGTTTTGCTCTTCCATTCTTAGATTGTTGTAATTATC  200

seq1  AGGCCAACCTTTGAATTCTGGAAGAGCTGAACATTTACTGTTCTCATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAACCTTTGAATTCTGGAAGAGCTGAACATTTACTGTTCTCATGAC  250

seq1  TGCATGTAACAAACCTGTATGTTCTGCCAGGAGCTCCAAAGAGACCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTAACAAACCTGTATGTTCTGCCAGGAGCTCCAAAGAGACCAACC  300

seq1  AAGATAATGATCATGTGTTCTGAATGACTCTGGAACATGTGAGCCCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATGATCATGTGTTCTGAATGACTCTGGAACATGTGAGCCCCACT  350

seq1  TTTCTTGTCTCTATGCCCAGACCTACATCCCCTACTGTGTTACCAGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTCTCTATGCCCAGACCTACATCCCCTACTGTGTTACCAGCACC  400

seq1  AGCGGGCGCTTCTCCCTATATTAATTCAACAATTTCTTCTAACTTCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGCGCTTCTCCCTATATTAATTCAACAATTTCTTCTAACTTCTTTG  450

seq1  AAAAATAGAATTTTTTGTTTCAGAATTCCTTTAGTATACTAAAAAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGAATTTTTTGTTTCAGAATTCCTTTAGTATACTAAAAAGGGAA  500

seq1  ATTTTCTGCTAGTGTGGGACCTCCTTGGGTACATTTCACTTTGCATAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGCTAGTGTGGGACCTCCTTGGGTACATTTCACTTTGCATAAGT  550

seq1  CACTTCCTCCTCATACTTGGGAAGGGGTTCCACACTTGAATATTTCCGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTCCTCATACTTGGGAAGGGGTTCCACACTTGAATATTTCCGAA  600

seq1  GGAGTTTTGTTTCATCTTCCCTGCCTGTGCCCCATCCATCTCATCTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTTGTTTCATCTTCCCTGCCTGTGCCCCATCCATCTCATCTTCTT  650

seq1  TGTTCATTTGGATGTCTGGTCTTTTCTTTTATTTTGTCAGTGTTGTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTTGGATGTCTGGTCTTTTCTTTTATTTTGTCAGTGTTGTTCTG  700

seq1  TTTGATCTTTTCTTCTGATGGCGAGGAATATCTCCCTTCATTATCAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTTTTCTTCTGATGGCGAGGAATATCTCCCTTCATTATCAACTC  750

seq1  ATGGACATGAGTTGAGTTTCAGTTTTCAGACCAGCCACATCTCAGTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACATGAGTTGAGTTTCAGTTTTCAGACCAGCCACATCTCAGTCTTC  800

seq1  TTATTTGACTCTATTCTCTCCATATTGAGTAACAGTTCACAGACATGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGACTCTATTCTCTCCATATTGAGTAACAGTTCACAGACATGCTG  850

seq1  GGGATGAGTCCTCTCCACCCAGTGTAGAACCTCTAGCAATTCTGTGTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAGTCCTCTCCACCCAGTGTAGAACCTCTAGCAATTCTGTGTCAC  900

seq1  ACTGAGCATTCTTTCAGTGTATAACAATGAAGCTATACATTCTTGGTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCATTCTTTCAGTGTATAACAATGAAGCTATACATTCTTGGTCTT  950

seq1  TGGTCATGTTGCTGTCCCTGCGTTTCTGAGGTTCTTGCACATTAAGGTGC  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGTCATGTTGCTGTCCCTGCGTTTCTGA-GTTCTTGCACATTAAGGTGC  999

seq1  AGTTGAGCCTCAGTCCTGATCCAATTCTGCCTTACCAAGAGCC-TTGAAA  1049
      ||||||| |||||||||||||||||||||||||||| |||||| ||||||
seq2  AGTTGAG-CTCAGTCCTGATCCAATTCTGCCTTACC-AGAGCCTTTGAAA  1047

seq1  CT-CCAC-TATT-GAAATAT-CCTTCAACTTTCTGAAGCAGATGG--ATA  1093
      || |||| |||| ||||||| |||||||| |||||||||||||||  |||
seq2  CTCCCACTTATTGGAAATATCCCTTCAAC-TTCTGAAGCAGATGGGAATA  1096

seq1  CCCCAAAAAGACTGGATGAAATAAACCAAAACTCTC  1129
      |||| |||||||| |||||||||     ||||||||
seq2  CCCC-AAAAGACT-GATGAAATA---TCAAACTCTC  1127


seq1: chr9_26260658_26261793
seq2: B6Ng01-238A03.g_62_1176 (reverse)

seq1  ATATTCAACTGCCCCTAGGAATACTATTTACTAGTGAAAAAGACAGCAAA  50
      |||| ||||||||  |  |||| ||||||||||||| |||||||||||||
seq2  ATATGCAACTGCCTTTGAGAATCCTATTTACTAGTG-AAAAGACAGCAAA  49

seq1  AACTCAGTCAAAACTACTTAATTTAGCCTTAAAATGTTAAGCAAAATGAA  100
        | ||||| ||||||||    |||||  | ||||||| ||| ||||| |
seq2  CTC-CAGTC-AAACTACT---ATTAGC--TTAAATGTT-AGC-AAATG-A  89

seq1  AGAAGCAGAAACAGAAGTTCACAGCCCATGATTTCCTTTGCATTGGGGGT  150
      ||||||||||||||||| |||||| ||||||||||  ||||||   ||| 
seq2  AGAAGCAGAAACAGAAG-TCACAG-CCATGATTTC--TTGCAT---GGGG  132

seq1  TGGGAGAAACCCAGCGGAGACAAAGCTACAAAGGCCAGCATCACATTTGT  200
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  TGGGAGAAACCCAGC-GAGACAAAGCTACAAAGG-CAGCATCACATTTGT  180

seq1  GGTCACACTTATCAGTGATTGTTCCAAAGCAACCACCCAGGCTATGAAAG  250
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  GGTCACACTTATCAGTGATTGTCCCAAAGCAACCA-CCAGGCTATGAAAG  229

seq1  GTTTCCCATCAGAGCGGAACACCACGAGGAGTAGGGCATCCCTTCTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCATCAGAGCGGAACACCACGAGGAGTAGGGCATCCCTTCTCTGG  279

seq1  ATCCAGCACAATTATGATTTTTTTAAAACTTTTTGCAAAACAAGAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCACAATTATGATTTTTTTAAAACTTTTTGCAAAACAAGAAATTC  329

seq1  CAATGACTTTGAACATGTGCTTTCCAGAGAGCTCACAAGTGGGACCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTTTGAACATGTGCTTTCCAGAGAGCTCACAAGTGGGACCTTGG  379

seq1  AGGAGGCCTCTCGGCCCCCAGATAATTTATTCAGTTCCAAGAATACAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCCTCTCGGCCCCCAGATAATTTATTCAGTTCCAAGAATACAAGT  429

seq1  GACTTCAGTCCTCCCTCGCCTGTCTTCATCTCAGTCATAGACATCTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGTCCTCCCTCGCCTGTCTTCATCTCAGTCATAGACATCTCCCC  479

seq1  GTGCCCAGCAAGAGACTGACCAGCTTCCTCAAAAAACAACCAAACGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCAGCAAGAGACTGACCAGCTTCCTCAAAAAACAACCAAACGTTTA  529

seq1  GAGAGACGATGGTGGATTATACACACAGATCAAAAGAGCCTCGGGAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACGATGGTGGATTATACACACAGATCAAAAGAGCCTCGGGAGAGT  579

seq1  GGACAAGAACCATAATGGAAAGGGAAATTGTGCCTTTTGCCTGACATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGAACCATAATGGAAAGGGAAATTGTGCCTTTTGCCTGACATACT  629

seq1  GGTCACTCAGAGCACAGAGGGATCATGGAGCAAAACAGGAGACAAGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTCAGAGCACAGAGGGATCATGGAGCAAAACAGGAGACAAGGTGG  679

seq1  AAGGCAGGGACAGTGGCTTCTAGCCTCCAGGTGATCTATGACACTCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGGACAGTGGCTTCTAGCCTCCAGGTGATCTATGACACTCTGGA  729

seq1  CCAGTCCCCATATTTGTACATGACCATATTATCCAGCACATGCTAGAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCCCATATTTGTACATGACCATATTATCCAGCACATGCTAGAAAC  779

seq1  TTTGGGTCCTGGCTTTGCTCTGGTAGCACCACCTTGGAGGTTGTTATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCCTGGCTTTGCTCTGGTAGCACCACCTTGGAGGTTGTTATAGC  829

seq1  CTGTCTGTGCCCAGCTCCTGGGTCATGTGATATTAGACAAGAGAACATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTGCCCAGCTCCTGGGTCATGTGATATTAGACAAGAGAACATCT  879

seq1  TTCCCCCCCCAGAAGGTGAGTAGTGTGGTTTCTGGGAGCCCAGCCCATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCCCAGAAGGTGAGTAGTGTGGTTTCTGGGAGCCCAGCCCATGG  929

seq1  AACACAAATTTGTCCGTCCCCTCTGCCCCGGCCCCCAGGGAAAGTGTTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAATTTGTCCGTCCCCTCTGCCCCGGCCCCCAGGGAAAGTGTTCC  979

seq1  ATCCCTGAGAGAGACTGGTCAGCCCAGAGGTAGGAATAAAGTTGACAGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGAGAGAGACTGGTCAGCCCAGAGGTAGGAATAAAGTTGACAGCC  1029

seq1  TGACCTTGGCAGTTGGCTCTCTGCCCATCCCTTTCAAAACACCACTTAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGGCAGTTGGCTCTCTGCCCATCCCTTTCAAAACACCACTTAGA  1079

seq1  GACGCAGAACTGTATCAGCGCAGAGTAAAGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  GACGCAGAACTGTATCAGCGCAGAGTAAAGGAATTC  1115


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