BAC Information

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BAC

Clone NameB6Ng01-238H11
Chromosome9 (Build37)
Map Location 64,474,887 - 64,580,957
singlet/doubletdoublet
Overlap geneMegf11, Rab11a
Upstream gene2310007F21Rik, Smad3, LOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l
Downstream geneAI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238H11.bB6Ng01-238H11.g
ACCGA049153GA049154
length743289
definitionB6Ng01-238H11.b B6Ng01-238H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,580,216 - 64,580,957)(64,474,887 - 64,475,175)
sequence
gaattctcttttgttagataattccatccatctatctggccattgagcct
aaatagattacttcttgctttggttagaaaaaagaaatggctctccttat
catgtcacatttctttttcttttttaaagatctatttattttatgtacta
atttatataagtacactgtagctttttttcagacacaccagaagagggca
tcagatgacattgcaaatggtcgtgagcctccatgaggttgctgggaatt
gaactcaggacctctggaagagcagtcagtgcttttaactgctgagctat
ctctccagcccctgatcatgtcacagaaactatctttttttccatcctta
caaaactggaatcttaggtcatttaagatatccttttccttagacaagtt
gctagtctttggagatcttgtcagtaactagttggtataactattttata
ctgttagatcatttgtgaattttgaattgtttacaaactattgctttttt
ttttttttttggttttttgagacagggtttctctgtgtagccctggttgt
cctggaactcactctgtagaccaggctgacctccaactcagaaatccacc
tgcctctgcctcccaagtgctgggattaaaggcatgtgccaccgctgctc
ggtgctattttttttaagtaataaattttttaaggtaattttttaaagta
ataaaattaattggttacatgggtatgtgtgtggggggggttc
cttgtccccagaaggggcagtgttctttacccatcctaaccatagaggtc
agctccagatgtgctccccacttcccacttccacatctgtttcccttccc
ctccccctgcttgctggaatcactcttagagcgtttctgaagattctggg
ccatccaaagctgggactgggaactgaggcctattggacaaagcaaacag
caataggcatgatgagttagagccaaccgggagtaggagggttccagact
tcttggaggaggaggaggaggaagaggaggaggagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_64580216_64580957
seq2: B6Ng01-238H11.b_49_791 (reverse)

seq1  GAA-CCCCCCCACACACATACCCATGTAACCAATTAATTTTATTACTTTA  49
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCCCCCACACACATACCCATGTAACCAATTAATTTTATTACTTTA  50

seq1  AAAAATTACCTTAAAAAATTTATTACTTAAAAAAAATAGCACCGAGCAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTACCTTAAAAAATTTATTACTTAAAAAAAATAGCACCGAGCAGC  100

seq1  GGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGAT  150

seq1  TTCTGAGTTGGAGGTCAGCCTGGTCTACAGAGTGAGTTCCAGGACAACCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTGGAGGTCAGCCTGGTCTACAGAGTGAGTTCCAGGACAACCA  200

seq1  GGGCTACACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAAG  250

seq1  CAATAGTTTGTAAACAATTCAAAATTCACAAATGATCTAACAGTATAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTTTGTAAACAATTCAAAATTCACAAATGATCTAACAGTATAAAA  300

seq1  TAGTTATACCAACTAGTTACTGACAAGATCTCCAAAGACTAGCAACTTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATACCAACTAGTTACTGACAAGATCTCCAAAGACTAGCAACTTGT  350

seq1  CTAAGGAAAAGGATATCTTAAATGACCTAAGATTCCAGTTTTGTAAGGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAAAAGGATATCTTAAATGACCTAAGATTCCAGTTTTGTAAGGAT  400

seq1  GGAAAAAAAGATAGTTTCTGTGACATGATCAGGGGCTGGAGAGATAGCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAGATAGTTTCTGTGACATGATCAGGGGCTGGAGAGATAGCTC  450

seq1  AGCAGTTAAAAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTAAAAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCC  500

seq1  AGCAACCTCATGGAGGCTCACGACCATTTGCAATGTCATCTGATGCCCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCTCATGGAGGCTCACGACCATTTGCAATGTCATCTGATGCCCTC  550

seq1  TTCTGGTGTGTCTGAAAAAAAGCTACAGTGTACTTATATAAATTAGTACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTGTGTCTGAAAAAAAGCTACAGTGTACTTATATAAATTAGTACA  600

seq1  TAAAATAAATAGATCTTTAAAAAAGAAAAAGAAATGTGACATGATAAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAATAGATCTTTAAAAAAGAAAAAGAAATGTGACATGATAAGGA  650

seq1  GAGCCATTTCTTTTTTCTAACCAAAGCAAGAAGTAATCTATTTAGGCTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATTTCTTTTTTCTAACCAAAGCAAGAAGTAATCTATTTAGGCTCA  700

seq1  ATGGCCAGATAGATGGATGGAATTATCTAACAAAAGAGAATTC  742
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAGATAGATGGATGGAATTATCTAACAAAAGAGAATTC  743

seq1: chr9_64474887_64475175
seq2: B6Ng01-238H11.g_74_362

seq1  CTTGTCCCCAGAAGGGGCAGTGTTCTTTACCCATCCTAACCATAGAGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCCCAGAAGGGGCAGTGTTCTTTACCCATCCTAACCATAGAGGTC  50

seq1  AGCTCCAGATGTGCTCCCCACTTCCCACTTCCACATCTGTTTCCCTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGATGTGCTCCCCACTTCCCACTTCCACATCTGTTTCCCTTCCC  100

seq1  CTCCCCCTGCTTGCTGGAATCACTCTTAGAGCGTTTCTGAAGATTCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTGCTTGCTGGAATCACTCTTAGAGCGTTTCTGAAGATTCTGGG  150

seq1  CCATCCAAAGCTGGGACTGGGAACTGAGGCCTATTGGACAAAGCAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAAAGCTGGGACTGGGAACTGAGGCCTATTGGACAAAGCAAACAG  200

seq1  CAATAGGCATGATGAGTTAGAGCCAACCGGGAGTAGGAGGGTTCCAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGCATGATGAGTTAGAGCCAACCGGGAGTAGGAGGGTTCCAGACT  250

seq1  TCTTGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGAAGA  289
      |||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGAAGA  289