BAC Information

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BAC

Clone NameB6Ng01-238L05
Chromosome9 (Build37)
Map Location 27,937,617 - 27,938,760
singlet/doubletsinglet
Overlap geneOpcml
Upstream geneJam3, Igsf9b, Spata19, LOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238L05.bB6Ng01-238L05.g
ACCGA049327GA049328
length1,2361,128
definitionB6Ng01-238L05.b B6Ng01-238L05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ggaattcagttatatcctctaattgataagattttgagagaactggataa
tataaattctaaattaaatacacaaaatcagaaaaagttgaaaggtcgaa
atagaacaaagaaaagggaagaaatggaaaacagtagcagaaacagtcaa
cattaagttggctctgtcaaacatctcctgacacacctatagtccaagta
taccaaccagaacacaggctgccagacagggtagaaaaacaagaactaac
ttatgttgcataaggaaatttactataactataaagactagaaagattgt
aggtggtagataggtagatatgttaaaaataaaatgatagagaaggtata
tgctaatactaataaaaaagagaaagtgtattaatttcaggacaggttaa
attatcaagcataatttaagtgatacagtagcttcagatatagttaggaa
gctttctctcccagaggacctaagttcagtgcctatgttgagtgactttc
aacttcctataactccagatctagaggatctgacttcttgcttcctcagt
agctacatatacccctcaggtacatttatctacacacacacacacacaca
cacacacacacacacacacgaacacatacaattaaataaaataaataaaa
agattaatgcaaaattatgtgtcattaacaactcttgaggtgtgtctaca
tcagagtggcagcatatatgaggcaaaaaaaaaaacaatcatagaactga
aaataaaatcatacaactccattatcacagtagagaatttcaagaccact
ccatcagaatagacagaaacaaaaggcagaaaatcaatacagacatagtt
gaattcaacagatccaaaaattaactgaatgtgttccacatctctagagt
actttattcaaaaaagataattggcacattgttctaaagcttgcatgggg
acaatcactgaggactgaccacacctgggacaagaaaaataccaccctca
gcaaattgagcaaggatggaatttttttcaagttatcatctatttcctca
gaccaccaatgaaataacactattaaacgttggccagaagtggatagaat
aaatgttagaaaattataggacaaacatgatacttctaaataacaatatt
gggttccaaaaaaattcccagggcaaactaactatttgaactagccagaa
ttcaaagaaaaggttacaccatatgaaaaatatggt
gaattcatggccataaacaccatttctcagccttccagggacagtctcac
acttcttccaaagactggcttccttcctctctgataaatggcccctcatc
catctcatctccaacctcagtcccccatggtaagcaagaagatggagcac
agagcccacatacaggctcaatactatatggggtttcctgatgtcacatt
ctctggcaggtactgtgtgctgagtttagtatagaactgagagttgatat
gttttctgcattaaatgagagaatatataaaggcttaatggtcttttatc
aaagagcagatcttagataaagagggatattcgattggagaactaactta
tacctcttccacccatttggagttcaaaagcaagatcccgaagacctatt
atgttctgacatcaaatcagattactggccagaggaggttaatctctctg
tcttcttgtttgtaataatactaaaatgttgctgtttcagtagaatccac
gtccaggctcagtgtaatgcaacagaactcatgttgttaagagttggagc
agagcatcactctacaggaagtcaatcttggcaacacactggtttccttg
cctttcccttgacttcatcagaaagaggaaagtcatattgtacattgtct
ctacttccagtaagcctttggggtcaccacagttacaggaacaagtttgt
gtgctcagccacgtaaataaagagctctttagaatgtcaggcactaattg
attacaagtgtacccacataaacaacaggctgattggccgtgcatgtgca
ttcagggtagtctttgttttatttgcttttgctatggtaggttctcaatt
gtccctcaccctctactctaactctgcccttttcttccattactctatta
tggacttgcataaaggaaagaaatagcatttggattgttcataaatcttt
tccatgacagtggatataagggtacacagttttacatttcagaatgttgc
ttagctctacctcaagcatgagaggcattactggaagagatttgaaatac
tttgattcagaactacattgggacctcttcatttggcaatggtcacacca
cctagcatctcccagagctctggatggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27937617_27938760
seq2: B6Ng01-238L05.g_68_1195

seq1  GAATTCATGGCCATAAACACCATTTCTCAGCCTTCCAGGGACAGTCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCCATAAACACCATTTCTCAGCCTTCCAGGGACAGTCTCAC  50

seq1  ACTTCTTCCAAAGACTGGCTTCCTTCCTCTCTGATAAATGGCCCCTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCCAAAGACTGGCTTCCTTCCTCTCTGATAAATGGCCCCTCATC  100

seq1  CATCTCATCTCCAACCTCAGTCCCCCATGGTAAGCAAGAAGATGGAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATCTCCAACCTCAGTCCCCCATGGTAAGCAAGAAGATGGAGCAC  150

seq1  AGAGCCCACATACAGGCTCAATACTATATGGGGTTTCCTGATGTCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCACATACAGGCTCAATACTATATGGGGTTTCCTGATGTCACATT  200

seq1  CTCTGGCAGGTACTGTGTGCTGAGTTTAGTATAGAACTGAGAGTTGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCAGGTACTGTGTGCTGAGTTTAGTATAGAACTGAGAGTTGATAT  250

seq1  GTTTTCTGCATTAAATGAGAGAATATATAAAGGCTTAATGGTCTTTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGCATTAAATGAGAGAATATATAAAGGCTTAATGGTCTTTTATC  300

seq1  AAAGAGCAGATCTTAGATAAAGAGGGATATTCGATTGGAGAACTAACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAGATCTTAGATAAAGAGGGATATTCGATTGGAGAACTAACTTA  350

seq1  TACCTCTTCCACCCATTTGGAGTTCAAAAGCAAGATCCCGAAGACCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTTCCACCCATTTGGAGTTCAAAAGCAAGATCCCGAAGACCTATT  400

seq1  ATGTTCTGACATCAAATCAGATTACTGGCCAGAGGAGGTTAATCTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGACATCAAATCAGATTACTGGCCAGAGGAGGTTAATCTCTCTG  450

seq1  TCTTCTTGTTTGTAATAATACTAAAATGTTGCTGTTTCAGTAGAATCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGTTTGTAATAATACTAAAATGTTGCTGTTTCAGTAGAATCCAC  500

seq1  GTCCAGGCTCAGTGTAATGCAACAGAACTCATGTTGTTAAGAGTTGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGCTCAGTGTAATGCAACAGAACTCATGTTGTTAAGAGTTGGAGC  550

seq1  AGAGCATCACTCTACAGGAAGTCAATCTTGGCAACACACTGGTTTCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCACTCTACAGGAAGTCAATCTTGGCAACACACTGGTTTCCTTG  600

seq1  CCTTTCCCTTGACTTCATCAGAAAGAGGAAAGTCATATTGTACATTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCTTGACTTCATCAGAAAGAGGAAAGTCATATTGTACATTGTCT  650

seq1  CTACTTCCAGTAAGCCTTTGGGGTCACCACAGTTACAGGAACAAGTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCAGTAAGCCTTTGGGGTCACCACAGTTACAGGAACAAGTTTGT  700

seq1  GTGCTCAGCCACGTAAATAAAGAGCTCTTTAGAATGTCAGGCACTAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAGCCACGTAAATAAAGAGCTCTTTAGAATGTCAGGCACTAATTG  750

seq1  ATTACAAGTGTACCCACATAAACAACAGGCTGATTGGCCGTGCATGTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGTGTACCCACATAAACAACAGGCTGATTGGCCGTGCATGTGCA  800

seq1  TTCAGGGTAGTCTTTGTTTTATTTGCTTTTGCTATGGTAGGTTCTCAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTAGTCTTTGTTTTATTTGCTTTTGCTATGGTAGGTTCTCAATT  850

seq1  GTCCCTCACCCTCTACTCTAACTCTGCCCTTTTCTTCCATTACTCTATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCACCCTCTACTCTAACTCTGCCCTTTTCTTCCATTACTCTATTA  900

seq1  TGGACTTTGCATAAAAGGAAAGAAATAGCATTT-GATTGTCCATAAATC-  948
      ||||| |||||| |||||||||||||||||||| |||||| |||||||| 
seq2  TGGAC-TTGCAT-AAAGGAAAGAAATAGCATTTGGATTGTTCATAAATCT  948

seq1  TTTCCATGAACAGT-GATATTAAAGGGTAACACAGTTTTACATTTCAGAA  997
      |||||||| ||||| |||||  |||||| |||||||||||||||||||||
seq2  TTTCCATG-ACAGTGGATAT--AAGGGT-ACACAGTTTTACATTTCAGAA  994

seq1  TTGGTGCTTAGCTCTAACTCAGGCATTGAGAAGCATTTAACTGGAAAGAG  1047
       || |||||||||||| |||| ||| ||||| |||||  ||||| |||||
seq2  -TGTTGCTTAGCTCTACCTCAAGCA-TGAGAGGCATT--ACTGG-AAGAG  1039

seq1  AATTGGAAAATACTTTGTATTCAGGAACTTACATTTGGA-CTCTTCATTT  1096
      | |||  |||||||||| ||||| |||| |||||| ||| ||||||||||
seq2  ATTTG--AAATACTTTG-ATTCA-GAAC-TACATTGGGACCTCTTCATTT  1084

seq1  TGCAAATGTTCACACACACTAGCATCTCCCAAGAGCCTCTGGGATGGT  1144
       || |||| ||||||   |||||||||||| |||| |||| |||||||
seq2  GGC-AATGGTCACACCACCTAGCATCTCCC-AGAG-CTCT-GGATGGT  1128