BAC Information

Click to search

BAC

Clone NameB6Ng01-239E07
Chromosome9 (Build37)
Map Location 41,017,857 - 41,018,930
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495
Downstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239E07.bB6Ng01-239E07.g
ACCGA049738GA049739
length1361,075
definitionB6Ng01-239E07.b B6Ng01-239E07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aatactttgatggctgaaccttggtagtcagcctcaagaagcagaagtgg
ccaaacaagggaacagaccttggtagctataggaatgtaatctaatggtg
tttatggaggcagaggggatgggtaaggtggtgggg
gaattctgttctgtaaggacagacagagacatccaaaatgagagtcgcag
tacagagtaacaggtacaccatttccgaagctggcttagaaaagcaccag
catttattttctcatagtatctttctcgaggtggccaggaaggtctattg
gaatccaaaatgatgcttcataggctggacttattaaaggaacagtgtca
ctttgtttgtcttaaacaaccccgtgacatcatacttaatgagcaggaac
cagcagtgatatgaatgttcccattatagtcataaacaaaacaaggatgg
ccactgttaattatgatattattctggcatagaaaatatatgtgacctta
tcttggcacagaaactggaatatttgacaacagcgttctagtgtagttaa
gactgtataagcgttgatacctctcaatgcttgtggttttgatctcctgg
aactttataaatatagatgagcggctggctgtaccccacatgcttcagtt
tgttaacctcgagttcagagtttctagctaatactaattaggatagagaa
aataagaagtagaaatatgcggcaggaagtggtgcctactttctgtagat
aatatggtcaaaagaatcagctgaagatattatagcaaacattacagacc
ttagaaagacacatgagcatatatacacacactagcattcagagaaggta
acttagtagtggggcatttgcctggcatgttgaagatctcagacatgttc
ctctgtattgacaaaataaaaaatatactgaaaaatgatgatagtaaaaa
aaaaaaaaaacaaaacaaaaaaaaacctttaatttaaagcatggcaaaaa
tgttgtacaatctctgcaaaatcgtcaaacaaccctgaagaccattattt
attctccatatccatgagtgagcatgcatataacaaaaatcacatgttgt
atattacaatagtgtttaatagcaaatagtgcaaatagataccggttatg
tgtatgcacatgtgcatatatatttgtaacatggaatggatgtatatata
tatatatgtacatagtactatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_41017857_41018930
seq2: B6Ng01-239E07.g_65_1139 (reverse)

seq1  ATATATA--------TACATATATATATATATACATACATATACATGTAT  42
      |||||||        ||||||||||||||||||||| ||| | ||||| |
seq2  ATATATAGTACTATGTACATATATATATATATACATCCAT-TCCATGT-T  48

seq1  ACAAATATATATGCACATGTGCATACACATAACCGGTATTCTATTTGCAC  92
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACAAATATATATGCACATGTGCATACACATAACCGGTA-TCTATTTGCAC  97

seq1  TATTTTGCTATTAAAACACTATTGTAATATACAACATTGTGATTTTTGTT  142
      || ||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  TA-TTTGCTATT-AAACACTATTGTAATATACAACA-TGTGATTTTTGTT  144

seq1  ATATTGCATGCTCACTCATGGATATGGAGAATAAATAATGGTCTTCAGGG  192
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATA-TGCATGCTCACTCATGGATATGGAGAATAAATAATGGTCTTCAGGG  193

seq1  TTGTTTTGACGATTTTGCAGAGATTGTACAACATTTTTGCCATGCTTTAA  242
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-TTTGACGATTTTGCAGAGATTGTACAACATTTTTGCCATGCTTTAA  242

seq1  ATTAAAGGTTTTTTTTTGTTTTG-TTTTTTTTTTTTTTACTATCATCATT  291
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTAAAGGTTTTTTTTTGTTTTGTTTTTTTTTTTTTTTACTATCATCATT  292

seq1  TTTCAGTATATTTTTTATTTTGTCAATACAGAGGAACATGTCTGAGATCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTATATTTTTTATTTTGTCAATACAGAGGAACATGTCTGAGATCT  342

seq1  TCAACATGCCAGGCAAATGCCCCACTACTAAGTTACCTTCTCTGAATGCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATGCCAGGCAAATGCCCCACTACTAAGTTACCTTCTCTGAATGCT  392

seq1  AGTGTGTGTATATATGCTCATGTGTCTTTCTAAGGTCTGTAATGTTTGCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTATATATGCTCATGTGTCTTTCTAAGGTCTGTAATGTTTGCT  442

seq1  ATAATATCTTCAGCTGATTCTTTTGACCATATTATCTACAGAAAGTAGGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCTTCAGCTGATTCTTTTGACCATATTATCTACAGAAAGTAGGC  492

seq1  ACCACTTCCTGCCGCATATTTCTACTTCTTATTTTCTCTATCCTAATTAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTCCTGCCGCATATTTCTACTTCTTATTTTCTCTATCCTAATTAG  542

seq1  TATTAGCTAGAAACTCTGAACTCGAGGTTAACAAACTGAAGCATGTGGGG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCTAGAAACTCTGAACTCGAGGTTAACAAACTGAAGCATGTGGGG  592

seq1  TACAGCCAGCCGCTCATCTATATTTATAAAGTTCCAGGAGATCAAAACCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCAGCCGCTCATCTATATTTATAAAGTTCCAGGAGATCAAAACCA  642

seq1  CAAGCATTGAGAGGTATCAACGCTTATACAGTCTTAACTACACTAGAACG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTGAGAGGTATCAACGCTTATACAGTCTTAACTACACTAGAACG  692

seq1  CTGTTGTCAAATATTCCAGTTTCTGTGCCAAGATAAGGTCACATATATTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCAAATATTCCAGTTTCTGTGCCAAGATAAGGTCACATATATTT  742

seq1  TCTATGCCAGAATAATATCATAATTAACAGTGGCCATCCTTGTTTTGTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCCAGAATAATATCATAATTAACAGTGGCCATCCTTGTTTTGTTT  792

seq1  ATGACTATAATGGGAACATTCATATCACTGCTGGTTCCTGCTCATTAAGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTATAATGGGAACATTCATATCACTGCTGGTTCCTGCTCATTAAGT  842

seq1  ATGATGTCACGGGGTTGTTTAAGACAAACAAAGTGACACTGTTCCTTTAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCACGGGGTTGTTTAAGACAAACAAAGTGACACTGTTCCTTTAA  892

seq1  TAAGTCCAGCCTATGAAGCATCATTTTGGATTCCAATAGACCTTCCTGGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCAGCCTATGAAGCATCATTTTGGATTCCAATAGACCTTCCTGGC  942

seq1  CACCTCGAGAAAGATACTATGAGAAAATAAATGCTGGTGCTTTTCTAAGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCGAGAAAGATACTATGAGAAAATAAATGCTGGTGCTTTTCTAAGC  992

seq1  CAGCTTCGGAAATGGTGTACCTGTTACTCTGTACTGCGACTCTCATTTTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCGGAAATGGTGTACCTGTTACTCTGTACTGCGACTCTCATTTTG  1042

seq1  GATGTCTCTGTCTGTCCTTACAGAACAGAATTC  1074
      |||||||||||||||||||||||||||||||||
seq2  GATGTCTCTGTCTGTCCTTACAGAACAGAATTC  1075